Coregonus clupeaformis (lake whitefish): 121569716
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Entry
121569716 CDS
T08357
Name
(RefSeq) nuclear factor NF-kappa-B p100 subunit-like isoform X1
KO
K04469
nuclear factor of kappa light polypeptide gene enhancer in B-cells 2
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04010
MAPK signaling pathway
cclu04625
C-type lectin receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cclu03000
]
121569716
Transcription factors [BR:
cclu03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
RHR (Rel homology region) Rel/Ankyrin
121569716
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RHD_DNA_bind
RHD_dimer
Ank
Ank_2
Ank_3
Ank_4
Ank_5
Death
Fimbrial_CS1
Motif
Other DBs
NCBI-GeneID:
121569716
NCBI-ProteinID:
XP_041736798
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All DBs
Position
1:49150804..49164564
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AA seq
907 aa
AA seq
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MSGALRMDEAQYSMKMIENELMMNLSYDFMPPVDVKIEPYIPETAHGPYIQIIEEPKQRG
FRFRYECEGPSHGGLPGASSERNRRTYPTVKVSNYVGIARVEVQLVTHSDPPQVHAHSLV
GRQCCTESGTCSMDVGPNDLTAQFSNLGILHVTKRGVGEVLCKRLRDEKRRQRGQHYHFT
DAEEQSIVKEAKELGKIMDLNIVRLKFTAYLQDSNGGFSRALKPVVSNPIYDSKSPNASN
LKISRMDKTSGSVLGGDEIFLLCDKVQKDDIEIRFYEEDDGSWEAFGDFSPTDVHKQYAI
VFKTPPYHSTEIERQVTVFLQLKRKKGGDCSDPKQFTYVPRVQDKEEVQRKKQKPFSYND
QWRGSLGGAGGAGRGAGGGGGGGFQFNQQMNGSGWMGGGFTGFGGGGAQMSGTTVQAEGT
QQQQAGGMAGQTPGQTASPLQQQLFQIAATLQSRATQMTKQTAGALLQYCTTGDVRVLLA
MQRHLCGVQDENGDTPLHLSIIHQQSAVTQQLVHTLFTIQQHKVLNKLNHLGQTPLHLAV
ITRQVKVVDVLLRAGADPTLLDRDGRTALHLAALAGDDVTLRVLLGHLGERYVHLVNMAD
YHGLHPLHLAVRKGGERCLRLLVEGGAKINAPEQKSGCSALHLAVRENLFKVACTLITEL
KADVNMGTFGGNTPLHLAASQGSPPLCSMLIAAGANKNLENDEPLFFSSSSSDEEQEDGP
IRDFRAIQQLPNTPPPSEIEQVNPRKRSATGHTPFDLAKCHKVRNLLDSRQSPKPSQHSS
KKPKPSSTEAESGQLDSETLSKLCELLSLNDVPWRQLAEKLNMLSLAHLYQESPLPCHNL
LENYQLGGGPVEVLVEALQSLGLTEGVRLLRQAELREDKQNTDQTVDSGFASQPMEEEIE
EPALANQ
NT seq
2724 nt
NT seq
+upstream
nt +downstream
nt
atgtctggagcactgagaatggatgaagctcagtacagcatgaaaatgattgaaaatgag
ctgatgatgaatttatcgtatgatttcatgccccctgtggatgtcaagattgagccctac
atacctgagaccgctcatggaccctacattcagatcattgaggagcccaaacagagaggc
ttcagattccgctatgagtgtgagggtccgtcccacggtgggctcccaggggcctcaagc
gagaggaacaggaggacctaccccactgtcaaggtgtctaactatgtggggattgccagg
gtagaggtgcagctggtgacccactcagacccccctcaggtccacgctcacagtctggtg
gggaggcagtgctgcacagagagcggcacatgcagtatggatgtgggcccaaacgacctc
acagcacagttcagtaacctgggcatccttcatgtcactaagagaggggtgggggaagta
ttgtgcaagagactgagagatgagaagaggaggcaaagggggcagcactaccattttact
gatgcagaggaacaatccatagtgaaagaagccaaggagcttgggaagatcatggacctg
aacatagtgaggttaaagttcacggcctacctccaggacagtaacggagggttctctagg
gccctgaagccggtggtctctaaccccatctatgacagcaagtcacccaatgcctccaac
ctgaagatctcccgaatggataagaccagtgggtcagtgctgggaggagatgagatattc
ctactgtgtgacaaagtacagaaagatgatattgagatccgcttttatgaagaggatgat
ggaagctgggaggcctttggtgatttctctccaactgatgtccacaagcagtacgccatc
gtgtttaagacgccgccgtaccacagcacagagatcgagcgtcaagtcactgtattcctc
cagttgaaaaggaagaaaggtggagactgcagcgaccccaagcagtttacctatgttcct
cgagttcaagataaagaggaggtgcagcgtaagaagcagaagcccttctcctataatgac
caatggagagggtctctgggaggggctgggggtgcagggagaggggccggaggaggagga
ggtggtggcttccagtttaaccagcagatgaatggatcggggtggatggggggtggattc
actggttttgggggaggtggagcgcagatgtcaggcaccactgtccaggctgaggggacc
cagcagcagcaggcaggagggatggccggacagacgccaggacagacagcctcaccacta
caacagcagctcttccagattgctgccactctccagagcagggccactcagatgaccaag
cagacagctggggctctactacagtactgcaccactggggacgtccgggtccttctggca
atgcagagacacctatgtggcgtccaggatgaaaacggagacactcctttgcacctgtcc
atcattcaccagcagtcagctgtgacccagcagctggttcatacactcttcaccatccag
caacacaaagtcctcaacaagctcaaccaccttggccagactcctctccatctggcggtg
atcaccaggcaggttaaggtggtggatgttctcctcagggccggagcagaccccaccctg
ctggaccgggacggccggaccgccctgcacctggcagcactggccggggacgacgtcaca
ctccgggtcctgctggggcacctaggagaacgctatgtccacctggtcaacatggctgac
tatcatggtctccatcctctccacctggctgttcgtaagggaggagagcgctgtctgcgt
ctgctggtggagggcggggctaagatcaacgccccagagcagaagagtggatgctctgcc
ctccacctggctgttagagagaacctcttcaaagtggcctgcactctcatcacagagctg
aaagcagatgtaaacatgggtacttttggagggaacactcctctccatctggctgccagt
cagggctccccccctctctgctctatgctcattgctgcaggagccaataagaatctggag
aacgacgagccgctcttcttcagctcatcttcgtcagatgaggagcaggaggatggacca
ataagagatttcagagcgatccaacagctaccaaacacaccaccaccttcagagatagaa
caagtcaaccctcgtaagagatcagcaacaggacatacaccctttgacctggctaaatgt
cataaggtgagaaaccttctagactccagacagagtcccaagcccagccaacactcaagt
aaaaagcctaaaccgagcagcacggaagcagaaagtgggcagctagacagcgagacgcta
agtaagctgtgtgagctcctcagtctgaacgatgtgccatggagacagctggcagagaaa
ctcaacatgctctcactggcacacctgtaccaggagagtcccttgccctgtcacaacctg
ctggagaattaccagttgggtggcggtccagtggaagtgctggtggaagctctacagtct
ctgggtctgactgaaggagtgagactactgagacaggctgagctgagagaggacaaacag
aacacagatcagacagtggacagcggctttgcgagtcagccaatggaggaggagatagag
gagccagccttggccaaccagtga
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