Coregonus clupeaformis (lake whitefish): 121569719
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Entry
121569719 CDS
T08357
Name
(RefSeq) integrin alpha-IIb-like isoform X1
KO
K06476
integrin alpha 2B
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04510
Focal adhesion
cclu04512
ECM-receptor interaction
cclu04810
Regulation of actin cytoskeleton
cclu04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
121569719
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
121569719
09142 Cell motility
04820 Cytoskeleton in muscle cells
121569719
04810 Regulation of actin cytoskeleton
121569719
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
cclu01009
]
121569719
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
cclu04147
]
121569719
04515 Cell adhesion molecules [BR:
cclu04515
]
121569719
04090 CD molecules [BR:
cclu04090
]
121569719
Protein phosphatases and associated proteins [BR:
cclu01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
121569719
Exosome [BR:
cclu04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
121569719
Cell adhesion molecules [BR:
cclu04515
]
Integrins
Integrin alpha subunits
121569719
CD molecules [BR:
cclu04090
]
Proteins
121569719
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Integrin_A_Ig_3
Integrin_A_Ig_2
Integrin_A_Ig_1
FG-GAP
FG-GAP_3
Integrin_alpha
PH1_SSRP1-like
TM_ErbB1
Motif
Other DBs
NCBI-GeneID:
121569719
NCBI-ProteinID:
XP_041736802
LinkDB
All DBs
Position
7:30881678..30900931
Genome browser
AA seq
1056 aa
AA seq
DB search
MEEHRIHMIIQMMGLLLFALPHYSDTLNLNLVNFTEFSGPEGSFFGFSADFYQFSNNTIS
VVVGAPRANTSQPGVTEAGAVYLCPWAQTGGACTTMTFDTKGDEVYPHQNLGIRSSKSHQ
WFGATVRSSGNYIVACAPLFHWNVIDVGERDEAQNTPVGNCLVLNTLTGKTVDFSPCKEV
MTEKVYKALKYNNDRRYCEVGFSSDITKEGRLLIGAPGGYYFQGQIISAGLLDIVNSAKR
QNAKPYVAGQTHSPETGGYDHYHGYSVTTGEFTGDSIPDYVVGVPNDRNTAGTVKIYNGN
AINFLGVKHTFLGSQVASYFGHSVAVTDINNDGRDDILIGAPLFMERVSGQQLQEVGQVS
VYLQRERSTFHSKPDQKLTGSHVYGRFGSTIAPLGDLDKDGFNDVAVGAPSSGVEGRVFI
YMGTSNGLSPQYTQVIESPFQSLGSPAQFGFTLRGAVDIDSNGYPDLIVGAWGVNKIAVY
RAQAVVMAKTQLSLYPDFLNPDVKECERPTTNEPVACFTVMMCISVSGHSIPQEIVLDAE
LQLDKMKQPMARRTQLLQTNLPQEYFQLTIQRDVGVVCRNQTAYLRHESEFKDKLSPIFI
SLNYSLSNSNSQEAMLHGQRAVVTQTRIILDCGEDNICVPDLRLTAEAGTDRLLIGDDHP
ALLVITAENRGEGAYETELEIIPPTNTHYQSMVTDREGFSRLICAQKKENQTVVVVCELG
NPMKQGQKLQAGLFFSVGNLEEVESQVSFTLQIKSKNSQNPDSNVAHLRIDVSAVAALEM
RGGSSPPECVLPIAKWEEKEQPADLEEVGPLVEHVYELRNLGPSTVNARVEVEFPTRHHG
DFLLYVFANASEDFLTCHTDSPDIDPYQLVKTGNATVGTVYKVKQNEVARPETQRKETVH
VNCTSGDTCLRFVCEATGLERGWSAVVKVMSRLWVQTFLERPYENYVLHSTARYEVIDMP
SKIQPKELPSGQAEIQTSVVWRAPDGEKEVPVWWIIVAVVSGLFLLALLALIFWKVGFFN
RNRPPCDDDDDDAEQLAGAGQSEYAEMSPNTEDKQA
NT seq
3171 nt
NT seq
+upstream
nt +downstream
nt
atggaggaacaccggattcatatgataatacaaatgatgggtctcctgctatttgctctc
ccacattactctgacaccttaaatctaaacctggttaacttcactgaattctctggccct
gagggaagcttctttggcttctctgcagatttctatcagtttagcaacaacaccatcagt
gttgtggttggggcccccagagccaacacaagtcagccaggagtcactgaggcgggggct
gtgtatctctgtccctgggcacagacaggaggcgcctgtactaccatgacctttgacaca
aaaggtgatgaggtttatcctcaccagaatttagggataaggtcttcaaagtcccaccag
tggtttggagctactgtgcgatcctctggaaactacattgtggcctgtgcccccctgttc
cactggaacgtgatagacgtgggtgaacgtgacgaggcccagaacactccagtggggaac
tgcctagtgttgaacacactgacggggaaaacggttgacttctccccctgcaaagaagtc
atgacggagaaggtttacaaagccctgaagtacaataacgacagacgatactgtgaagtg
ggatttagctccgacataacaaaggagggaagactccttattggtgcccctggaggctac
tactttcaaggtcagatcatcagtgcaggactgcttgacattgtcaacagtgccaagaga
cagaatgccaaaccttatgtggcaggacaaacccattcccctgagactggtggatacgat
cattaccatgggtattctgtgaccactggcgagttcactggagactcaataccagattat
gtggttggggtgcctaatgaccgcaacacagcaggaacagtcaaaatctataatggaaat
gcaattaactttttgggagtgaaacacacattcttaggctctcaggtggcctcttacttt
ggccacagcgttgcagtgactgatattaacaatgatggacgagatgacatcctaatcggg
gcgccgctcttcatggagcgtgtgtcgggccagcagttacaggaggtgggccaggtgagt
gtgtacctgcagagagagcgctccaccttccactccaagccagaccagaagctgacaggt
tcccacgtgtacggacgctttggcagcaccatcgcccccctcggtgacctggacaaggac
ggttttaacgatgttgctgtgggagccccatcctcaggcgttgaagggagggttttcatc
tacatgggaactagcaatggactgtctccccagtatacccaggtcattgagagtcccttc
cagtccctaggctctccagcacagtttggcttcaccctgagaggggccgttgacattgat
tcaaatggctacccagatctaattgttggtgcatggggagtcaataagattgctgtgtac
agggctcaagccgtggtgatggccaaaacccaactctccctctaccctgacttcttgaac
ccagatgtgaaggagtgtgagcgccccaccaccaacgagcctgtggcctgcttcacagtc
atgatgtgcattagtgtgtctggccacagcattccacaggagatagttctagatgcagag
cttcaactggacaagatgaaacagccaatggccaggaggacccagttgctgcagaccaat
ctgccccaagagtatttccagctaaccattcagagagatgtgggagtggtctgcaggaac
caaactgcttacctaaggcatgagtcagagttcaaggacaagctgagccccatcttcatc
tccctgaactacagcctgtccaactccaactcccaggaggccatgctgcatggccagaga
gctgtggtcacacagaccaggatcattctggactgcggagaggacaacatctgtgtccct
gacctgaggctgactgctgaagcaggtaccgaccgtcttctgataggggatgaccaccct
gccctgttggtcatcacagcggagaacagaggagagggggcctacgagaccgagctggag
ataatcccaccaaccaacacacactaccagagtatggtgactgatagagagggcttcagc
aggttgatctgtgctcagaagaaggagaaccagacagtggtggtggtctgtgaactgggg
aaccctatgaagcagggccagaagctccaggccggtctgttcttcagcgtggggaacctg
gaggaggtggagagccaagtgtcattcacattacagatcaaaagcaagaacagccagaac
cctgacagtaacgtagcccatctgaggattgatgtcagcgctgtggcagctctggagatg
cgggggggctcctctccacctgagtgtgtcctgcccattgccaagtgggaagagaaggag
cagcctgctgacctggaggaggttggcccactagtggaacatgtctatgagttgaggaac
ctgggtccgagcacggtcaacgccagggtggaggtagagttccccacccgtcaccatgga
gacttcctgctctatgtgttcgccaacgcctctgaggatttcctcacctgccacactgac
tcccctgacatcgacccataccagttggtgaagactgggaatgctactgttggtacagtg
tacaaggtcaaacagaatgaggtggcacggccggagacacagcgcaaagagaccgttcac
gtgaactgcaccagtggagatacctgtctgaggtttgtgtgtgaggccacaggtctggag
agaggctggagcgctgtggtgaaggtgatgtcccgactctgggtacagactttcctggag
aggccctatgagaattatgttctccactctacagcacgctatgaggttattgatatgccc
tctaagatccagcctaaagagctgccaagtggacaggctgagatccagaccagtgtggtg
tggagagctcctgatggagaaaaggaggtgccggtgtggtggatcattgtggccgtggtc
tctggcctcttcctcctcgctctgctagctctgatcttctggaaggtggggttctttaat
cgcaaccgtcccccatgtgatgatgatgatgacgatgcagaacagctagctggtgctgga
cagtctgaatacgctgagatgtccccaaacacagaggacaagcaagcataa
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