Coregonus clupeaformis (lake whitefish): 121569745
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Entry
121569745 CDS
T08357
Name
(RefSeq) E3 SUMO-protein ligase ZBED1-like
KO
K24637
zinc finger BED domain-containing protein 1 (E3 SUMO-protein ligase ZBED1) [EC:2.3.2.-]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cclu03000
]
121569745
04121 Ubiquitin system [BR:
cclu04121
]
121569745
Transcription factors [BR:
cclu03000
]
Eukaryotic type
Zinc finger
Cys2His2 BED
121569745
Ubiquitin system [BR:
cclu04121
]
Ubiquitin ligases (E3)
UBL E3 ligases
121569745
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Ortholog
Paralog
GFIT
Motif
Pfam:
ZBED1_RNase-like_helical
Dimer_Tnp_hAT
ZBED1_RNase-like
FAM200-GTF2IRD2-like
TEX13
Motif
Other DBs
NCBI-GeneID:
121569745
NCBI-ProteinID:
XP_041736841
LinkDB
All DBs
Position
30:complement(28902057..28903638)
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AA seq
455 aa
AA seq
DB search
MIPKLYDTERALWQERVTKAPSVCLTTDCWTSRTTCSFMSVTCHFIEDYKMTSCLLDCFE
FTDRHTAENLAVELLRVAKEWQVEDKVVCCVSDNAANITKAIKVLKWTHHPCLAHTLNLV
VRDALKVIKTTVDKVKAVVEFFHKSTVAAQKLKSTQRQMGIPELRPKQECATRWNSTFDM
LKRMLEIKDAIISTLALINASIEPLSQEEWELVKEVCAVLQPFQEVTVEISADSYVTASK
MLLLCKGLQLVTAENQWTVTVQKVKELVAALCSAMDRKFLRMEYNTVLSETTLLDPRFKN
LPSVIVELLMKLFRGLVQQQQQNAPPSSQPAPPLQGQVEEEQQTSAVWRLFDDRATGDAS
RRNPTADAIMEVRSYLEEPLIQRAEDPLSWWQAKASVFPLLVKVMEGRLCIVATSVPSER
IFSKTGQILTERRNRIRPISPSKLRHLIFLNANLP
NT seq
1368 nt
NT seq
+upstream
nt +downstream
nt
atgatcccaaaactatatgacacagaacgtgcattatggcaagaaagggtgacaaaagct
ccatcagtttgcctgacaactgactgctggacctccagaacaacctgctctttcatgtct
gtcacttgccactttattgaagattacaagatgacatcttgccttctggactgcttcgag
ttcaccgacagacacactgcagaaaacttggcagtggagctactaagagtggcaaaagag
tggcaagtagaggacaaagtggtgtgctgtgtgagtgataatgctgcaaacatcaccaaa
gccataaaagttttgaagtggacccatcacccatgtctggcgcatacactaaacctggtg
gttagagatgctctgaaggtgatcaaaacaaccgtggataaggtgaaggctgttgtggag
tttttccacaaaagcacagtagcagcacagaagctaaagtccacacagcgccaaatgggg
attcctgaactgaggcccaaacaagagtgtgccaccaggtggaactcaacatttgatatg
ttgaaacgaatgcttgaaataaaagatgccatcatctccaccctggccctcatcaacgca
tctattgagccattaagccaagaggaatgggagctggtgaaagaggtctgcgccgtcctg
caaccattccaggaggtgactgtggagataagtgcagacagctatgtcacagcctcgaaa
atgctcctgctttgcaaaggtctgcagctggtgacagccgagaaccaatggacagtaact
gtgcagaaagtgaaggaattagttgcagctctttgttcagccatggaccgcaaatttctg
cggatggagtacaacactgtcctttcagaaactaccttattggatccaaggtttaaaaac
ttgccttcagtgatcgtagagctgttgatgaagctcttcagaggattagtgcagcagcag
cagcaaaatgcaccccccagcagccagccagctccaccattacagggccaagtggaggag
gagcagcaaacctctgctgtttggaggctttttgatgacagagctacaggagatgcttca
aggagaaatccgacagctgatgctataatggaggtgaggagctaccttgaggagcccctc
atccagagagcagaagacccactgagctggtggcaggccaaggcctcagtctttccactc
ctggtgaaggtgatggaggggagactatgtattgttgccacatcagttccttctgagaga
atcttctccaaaacagggcagatactcacggagaggcgaaatcgtatcaggcctatcagc
ccatccaagctgaggcatctgatcttcctgaatgccaacctgccctga
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