Coregonus clupeaformis (lake whitefish): 121569756 Help Entry 121569756         CDS       T08357                                  Name (RefSeq) pre-mRNA-splicing factor SYF1   KO K12867   pre-mRNA-splicing factor SYF1 Organism cclu  Coregonus clupeaformis (lake whitefish) Pathway cclu03040   Spliceosome Brite KEGG Orthology (KO) [BR:cclu00001]  09120 Genetic Information Processing   09121 Transcription    03040 Spliceosome     121569756  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:cclu03019]     121569756    03041 Spliceosome [BR:cclu03041]     121569756 Messenger RNA biogenesis [BR:cclu03019]  Eukaryotic type   mRNA surveillance and transport factors    Transport factors     Other transport factors      121569756 Spliceosome [BR:cclu03041]  Complex B   Other components    Prp19-related factors     121569756  Complex C     121569756 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  HAT_Syf1_CNRKL1_C HAT_Syf1_M HAT_Syf1_CNRKL1_N HAT_PRP39_C HAT_PRP39_N TPR_14 TPR_2 Suf TPR_8 TPR_12 TPR_15 TPR_16 ARM_TT21_C ARM_TT21 NRDE-2 SNAP TPR_1 LTN1_E3_ligase_6th Motif Other DBs NCBI-GeneID:  121569756 NCBI-ProteinID:  XP_041736864 LinkDB All DBs Position 7:32239295..32258904 Genome browser AA seq 850 aa AA seqDB search MPSLNGKPDVLFEEDDLPYEEEIIRNPYSVKCWMRYIEFKQNGAKSILNMIYERALKELP GSYKLWYNYLRERRKQVKGKCITEPAYEEINNCHERALVFMHKMPRIWLDYCQFLVSQCK ITRSRRTFDRALRALPVTQHPRIWPLYLRFARNLPLPETAIRVYRRYLKLSPENAEEYID YLRSCGKLDEAAVRLAAVVNDESFVSKEGKSNYQLWHELCDLISQNPDKVNSLNVGAIIR GGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAILTVVTVRDFTQVFDSYAQFEES MIAAKMETTSELGKDEEEDIDLELRLARFEQLIARRPLLLNSVLLRQNPHNVHEWHKRVK LYEGKPRQIINTYTEAVQTVDPMKATGKPSSLWVSFAKFYEENEQLDDARTIFEKATKVN YKQVDDLAGVWCEYGEMELRHENYEQALRILRKATAIPSKKAEYFDVSEPVQNRVYKSLK VWSMLADLEESMGTFQSTKAVYDRIIDLRIATPQIIINYAMFLEEHNYFEESFKAYERGI ALFRWPNVYDIWNTYLTKFIDRYGGTKLERARDLFEQALDGCPAKFAKTIYLLYAKLEEE FGLARHAMAVYERATQAVDKTERHHMFNIYIKRAAEIYGVTYTRAIYQKAIEVLPDEHSR DMCLRFADMESKLGEIDRARAIYSYCSQICDPRMTATFWQTWKEFEIRHGNEDTIREMLR IKRSVQATYNTQVNFMSSQMMKATTNATGTISDLAPGQMGLDDMKLLEQQAQQLAAEAEQ DKPKLKEKILFVRSDTSRSELAELAKQANPDEIDIDDEDGDDEDQGPEEVQLEQKSVPTA VFGGLKEGED NT seq 2553 nt NT seq  +upstreamnt  +downstreamnt atgccgtctctaaatgggaaaccggacgttctgtttgaggaagatgacctgccttatgag gaggagatcatcaggaatccgtactcggtcaagtgctggatgcgctacattgaattcaaa cagaacggcgccaagtccatcctcaacatgatctatgaacgagctctgaaagagctacct ggcagttacaagttatggtacaactatctgagagagagacggaaacaggtaaaagggaag tgcatcacggagccagcctacgaggagatcaacaactgccatgaaagagcactggttttc atgcacaagatgccgaggatatggctggactactgccagttccttgtgtctcagtgtaag atcaccaggagcagacgcacgtttgaccgagcactccgagccctgcccgtcactcagcac cctcgcatctggcccctgtacctccgctttgcccggaacctgcccctgcctgagaccgcc atccgtgtctatcgcaggtacctcaagctgtccccagagaatgcagaggagtacatagat tacctgcgttcctgcggcaagctggatgaagctgcagtgcgtctggcagccgttgtcaac gatgagagttttgtgtccaaggagggcaagtctaactaccagctatggcacgagctgtgt gacctgatctctcagaacccagacaaggtgaactctctgaatgttggggccatcatccgt ggaggcctcactcgcttcacagaccagctgggcaaactctggtgctccctggctgactac tacatccgcagtggacattttgaaaaggctcgtgatgtgtatgaggaggccatcttgacg gtggtgacggtgagagatttcacccaggtgttcgacagctacgcccagtttgaggagagc atgatcgctgccaagatggagactacctccgagctggggaaagatgaagaagaggacata gacctggagctgcgtctggcccgctttgagcagctgatcgcccgcaggcccctcctgctg aacagtgtgctgctgagacagaacccccacaacgtccacgagtggcataagagggtcaaa ctgtacgaggggaaaccacgacagatcatcaacacctacacagaggcagttcagactgtg gaccctatgaaggctacagggaaacccagctctctctgggtctccttcgccaagttctac gaggagaacgagcagctagacgacgcgcggaccatctttgagaaggccaccaaggtgaac tacaagcaggttgacgacctggctggcgtgtggtgtgaatacggagagatggagctacgc catgagaactacgaacaggcgctacgtatactgaggaaagcaactgccatcccgtccaaa aaggcagagtactttgacgtgtcagagccagtgcagaacagagtgtacaagtctctgaag gtctggtccatgctggctgacctggaggagagtatgggaaccttccagtccaccaaggcg gtgtacgaccgcatcattgacctgcgcattgccacgccccagataatcatcaactacgcc atgttcctggaggagcacaactactttgaggagagcttcaaggcgtacgagcgtggcatc gccctcttcaggtggcccaacgtctatgacatctggaacacgtaccttaccaagttcatc gaccgctacgggggcacgaagctggagagggcccgggacctgtttgagcaggcgctggac ggctgtccagccaagttcgccaagaccatctacctgctgtatgccaaactggaggaggag tttgggttggcgcgtcacgcaatggcggtgtacgagagagccacgcaggcagtggacaaa acggagaggcatcacatgttcaacatctacatcaagagggctgcagagatctacggcgtc acctacaccagagctatctaccagaaagccatcgaggtgcttccagacgaacactccagg gacatgtgcctgcgcttcgctgacatggagagcaaactgggcgagatcgaccgggccaga gccatctactcctactgctcccagatctgtgaccccaggatgacggccacgttctggcag acatggaaggagtttgagatccgccacgggaacgaagacactatccgtgagatgctgagg atcaagcgcagcgtccaggccacgtacaacacacaggtcaacttcatgtcctcgcagatg atgaaggccactaccaacgccaccggcaccatctcagaccttgccccgggccagatgggg ctggatgatatgaagctgttggagcagcaggcccaacagctggccgccgaggctgaacag gacaaacccaaactcaaagagaagatcctattcgtcaggagtgacacgtctcgcagcgag ctggctgaactggccaaacaagccaaccctgatgagattgatattgatgatgaggatggt gatgatgaagaccaaggcccagaggaggtgcagctggaacagaagagcgtccccaccgct gtctttggagggctgaaagaaggggaagattga

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