Coregonus clupeaformis (lake whitefish): 121569861
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Entry
121569861 CDS
T08357
Symbol
nphp3
Name
(RefSeq) nephrocystin-3
KO
K19360
nephrocystin-3
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
cclu03037
]
121569861 (nphp3)
Cilium and associated proteins [BR:
cclu03037
]
Primary cilia and associated proteins
Nephronophthisis-related proteins
121569861 (nphp3)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_NPHP3
TPR_12
NPHP3_hel
NPHP3
TPR_10
TPR_1
TPR_7
TPR_8
TPR_2
TPR_MalT
TPR_16
NPHP3_N
TPR_19
TPR_11
AAA_16
TPR_6
NACHT
ATPase_2
KAP_NTPase
14-3-3
AAA_22
DUF2225
TPR_9
IFP_35_N
AAA_19
AAA_14
XRCC4_CC
Motif
Other DBs
NCBI-GeneID:
121569861
NCBI-ProteinID:
XP_041737052
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Position
7:complement(19181980..19212507)
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AA seq
1301 aa
AA seq
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MGTASSLVSPGEVIEDAYGGEGGEACEIPVEVKPKARLLRSSFRRGPRVIGASFKSTGSV
DLEYTAEYERLRKEYEIFRVSKNNEITSMQKKEAKLDEENKRLRAELQALQKTYQKILRE
KESALEAKYQAMERAATFEHDRDKVKRQFKIFRETKEKEIQDLLRAKRDLEAKLLQLQAQ
GIMVYDPDDSDDDDNHTTVTAAGTPCDYWGGGVLGSEPSMGSMMQLQQTFRGPEFAHSLC
DVEGPFANVSRDDWDAAVASLLQVSPHVSQALWSNTVRCYLISTQETQAELDIFTQRYSP
RLQSLCEGLGHFYLNICFPEESAASYALERRQEMERSSVCVLLLKSSITSCVLEDAEEAF
VKNPDGRPLVLYLRTVEAHPLSGPTRQLLERVNAADKAAKVKVVDHGGSPEEGASMIYTQ
LEKVIKQELLGLEGSDVDSKDSGIDEGREEDLGDVLWDLHDEQEQIEAYQQACSAAAQLG
FQKYIDRLNDMVAAPPPTPPLLVSGGPGSGKSLLLSKWIELQQKHSPNTLFLYHFVGRPL
STSSEPVLIIKRLTVKLLQHFWSISGLSMDPSKILEEFPRWLERLSARHQGNIIIIIDSI
DQIQHAERHMKWLIDPLPVNVRVVVSVNVETCPQAWRLWPTLHLDPLNPREVKSVVNTEC
LAADVKLTKDQDKKLERHCRSASTCNALYVTLIAKMITNCRSAWSLERTLEQCLLCQDTM
SLYSLGLKVALDTLSTDRERHVMREMLCLVCASHNGVSESEVLAVFPDLGLPVLSSLLYT
LQRLCIVGLGCGLIRFQHLQAGEAVRLEFMDGGTCSPAYRENLIHYFSQQLSQDRVTWRV
ADELPWLLQQQEDRAKLQLSLLNLFVSQNLYKRGHFSELLAYWQYVGKDKSSMATEYFDS
LKHYEKSCESEDSMIRLANLYETLGRFLKDLGLLSQAVAPLQRSLEIRETALDPDHPSVA
LSLHQLAGVYVQWRKYGNAEQFYKQALEISENAFGSDHACVARELDSLAMLYQKQNKYEQ
AEKLRKRSVRIRQKTARQKGHMYGFTLLRRRAIQLEELTLGKDTADCAKTFNELGVLYYL
QNNLEAAKVFLTRSLEMRQRVLGPDHPDCAQSLNNLAALHTERREYETAEDMYERALDIR
KRALSPDHPSLAYTLKHLAMLYKRRGKLEKAVPLYELALDIREKSFGPKHPSVATALVNL
AVLYCHLKKHSEALPLYEQALRVYEDSLGRSHPRVGETLKNLAVLSYEEGDFEKAAELYK
RAMEIKEAEPSLVCGKAPSRHSSSGDTFSLRGPAPLQHAPR
NT seq
3906 nt
NT seq
+upstream
nt +downstream
nt
atgggtacagcctcctccctggtgagccctggggaggtgatagaggatgcgtacgggggt
gagggtggggaggcatgtgagataccggtggaggtcaaacctaaagcccgcctcctgcgg
agctcctttcgccgagggcccagggtgattggagccagcttcaaatccacgggctctgtg
gacctggagtacaccgccgaatacgagcggctccgcaaggagtatgagatcttccgggtc
agcaagaacaacgagatcacctccatgcagaagaaggaggccaagctggacgaggagaac
aagaggctgagagctgagctgcaggctctgcagaagacctaccagaagatcctgagagag
aaggagagtgccctggaggctaagtaccaagccatggagagagccgccacctttgagcac
gacagggacaaagtcaaacggcagtttaagatcttccgggagaccaaagagaaggagatc
caggatctgctgcgagccaagagggacttggaggccaagctactgcagttgcaggctcag
ggcatcatggtgtacgacccagatgactcggatgacgatgacaaccacaccaccgtcaca
gctgcagggactccctgtgattactggggtggtggagtgctgggcagtgagccctctatg
ggcagcatgatgcaactgcagcagaccttcagaggaccagagtttgcccacagcttgtgc
gatgtggagggcccgtttgccaatgtcagcagagatgactgggacgctgctgtggccagt
ctgctgcaggtgtctcctcacgtgtcccaggcgttatggagcaacacggtgcgctgctac
ctgatctctacccaggagacacaggctgagctggacatcttcacccagaggtactctcct
aggctgcagagtctgtgtgaggggctgggccatttctacctgaacatctgtttccctgag
gagagtgcagcctcctatgcactggaacgcagacaggagatggagaggagctctgtgtgt
gtgctcctccttaaatcctccatcactagttgtgtgttggaggatgcggaggaggccttt
gtgaagaacccagacggccgtccactggtactctacctcaggactgtggaggcccaccct
ctcagcggccccaccagacaactgctggagagggtcaacgctgcagacaaggcagccaaa
gtcaaggtagtggaccatggtggctccccagaggaaggagcgtctatgatctacactcaa
ctggagaaagtcatcaaacaggaactgctgggtttggagggcagcgacgtggacagtaag
gattcggggatagacgaggggcgcgaggaggatttgggggacgtgctgtgggacctgcat
gatgagcaggagcagatcgaggcctatcagcaagcctgcagcgccgcagctcaactgggc
ttccagaagtacatagatcgtctgaatgacatggtggcagcccctcctcccacccctcca
ctgctggtatcagggggacccggctccgggaagtctctcctgctgtccaaatggattgag
ctgcagcagaagcactcccccaacacgttgttcctgtaccattttgtggggcggcctctt
tctaccagctctgagcctgtactcattattaaacgcctcactgtcaagctgctgcagcat
ttctggtccatctctgggttatccatggatccctccaagatcctagaggagttccctcgc
tggctagagagactgtctgccaggcaccaaggcaacatcatcatcatcatcgactccatt
gaccagatacagcacgcagagaggcacatgaagtggctgatcgaccccctgccggtcaac
gtcagagtggtggtgtctgtcaacgtggagacctgtccccaggcctggagactgtggccc
accctccacctggacccgctgaatcccagagaggtgaagagtgtcgtcaacacagagtgc
ctggcagccgatgttaaactcactaaagaccaggataagaaactggagagacactgtcgc
tctgcatccacatgtaacgccctgtatgtcaccctgatagccaagatgatcaccaactgt
aggtctgcctggtcgttggagaggactctagagcagtgtctgctgtgtcaggacaccatg
tctctgtacagcttgggcctcaaggtggcgttagacactctcagcacagacagggagaga
cacgtcatgagagagatgttgtgtctggtgtgtgccagtcataatggtgtgagtgagtca
gaggtgctggcggtgtttccagacctgggcctgcctgtcctctcctccctcctctacacc
ctacagagactctgtattgtaggcctgggatgtggactcatcaggttccaacacctacag
gctggggaggctgtccggctggagtttatggatggagggacctgctctcctgcctacaga
gagaatctcatccactacttcagccagcaactcagtcaggacagggtgacgtggcgggtg
gcagacgagctgccctggctactccagcagcaggaggacagggccaagctgcagctcagc
ctccttaacctctttgtctcccagaacctctacaagaggggccatttctccgagctgctg
gcctactggcagtatgtgggcaaagacaagagctccatggccactgagtactttgactct
ctgaagcactatgagaagagctgtgagagtgaggatagcatgatcaggctggccaacctg
tatgagacactgggccgcttcctcaaagacttaggcctgctcagtcaggcggtagccccc
ttacagaggtctctggagatccgggagacggccctggacccggaccaccccagtgtggcc
ctgtccctacaccagctggccggggtttatgtccaatggaggaagtatggtaacgcagag
cagttctacaagcaggccctagagatcagtgagaacgccttcggatcggaccacgcctgt
gtcgcacgcgaactggactccctggccatgctctaccagaaacagaacaagtatgagcaa
gccgaaaaactaaggaagaggtctgtgaggattcgccaaaagactgcccgccagaaaggc
catatgtatggcttcactctgctacgtcggcgggccatccagttagaggagctgactctg
ggtaaagacacagcagattgtgccaagaccttcaacgagctgggagtcctctactacctc
cagaacaacttggaggcagccaaagtgtttctgacccgttctctggagatgcgtcagcgt
gtgttggggccggaccaccctgactgtgcccagtccctcaacaacttggcggccctacac
actgagaggagagagtatgagaccgcagaggacatgtacgagagagccctggacatccgg
aagagagccctgtcccctgaccacccctccctggcctacaccctgaaacacctggccatg
ctctacaaacgcagggggaagctggagaaggctgttcctctgtatgagctggctctggac
atcagggagaagagttttggacctaaacaccccagtgtggccacagcattggtcaacctg
gctgtactctactgccacctgaagaagcacagtgaagcgctgcccctgtatgaacaggct
ctcagagtgtatgaggacagtctgggacgctcacacccacgtgtcggagagacgctgaag
aacctagctgtactcagctatgaggagggggactttgagaaagcagcagagctctacaag
cgagccatggagatcaaggaggcggagccgtctctggtgtgtgggaaggccccgtctcgg
cactcgtccagtggggacacgtttagcctacgagggccagcccctctccaacatgccccc
aggtga
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