Coregonus clupeaformis (lake whitefish): 121569915
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Entry
121569915 CDS
T08357
Name
(RefSeq) LOW QUALITY PROTEIN: protein scribble homolog
KO
K16175
protein scribble
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
121569915
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
PDZ
LRR_8
LRR_14
PDZ_6
LRR_4
PDZ_2
LRR_1
LRR_13
LRR_9
LRR_LRWD1
Motif
Other DBs
NCBI-GeneID:
121569915
NCBI-ProteinID:
XP_045077114
LinkDB
All DBs
Position
7:complement(15685039..15805209)
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AA seq
1925 aa
AA seq
DB search
MLKCIPLWRCNRHVESVDKRHCNLQNVPEEIFRYSRSLEELLLDANQLRDLPKPFFRLLN
LRKLGLSDNEIQRLPPEVANFMQLVELDISRNDIPEIPESIKFCKALEIADFSGNPLSRL
PDGFTQLRGLAHLALNDVSLQTLPNDIGNLANLVTLELRENLLKSLPTSLSFLVKLEQLD
LGSNELEVLPDTLGALPNLRELWLDRNQLSSLPPELGNLRRLVCLDVSENRLEELPSELS
GLLALTDLLLTQNLLEMVPDSIGSLKQLSILKVDQNRLTHLSDSIGECENLTELVLTENL
LQTLPRSLGKLKKLTNLNVDRNRLGGVPDEMGCCASLNVLSLRDNRVAKLPAQLADATEL
HVLDVAGNRLQNLPFALANLNLKAMWLAENQSQPMLKFQTEDDESTGEKVLTCYLLPQQP
SSSLENLLQNSVDDSWTDSNLNRVSVIQFQEETTKQEAEDDEATAERRGLQRRATPHHSE
LKVMKKVIEERRNEVYTARHDGERQSPGAEKKRLSNLSSQSHDSAASNSTASANSHEERQ
GLMTTDLVGGRGHQEEEELDEMEVEYVEPTVHFAEEPIYRGGDENGDDEEGEDGVPHSDE
EEQQRPQFPTEKQRLIRKDTPHYKKNFKITKLPKPEAVAALLQGFSPDAHGPNPALHQTA
PKEEDDDEEEEEEEEEECMVTPQRHNRIEEPELEDRSLLHVNSSLQPVKGVSFDQVNNLL
IEPARIEEEEHNLTILRQTGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAGVKV
GDKLLEVNGVALQGAEHHTAVEALRSSGTAVSMSVIREHMVEPENAITTTPLRPEDDYFP
RERRASGLPFCMEASSPAGPRHRLSTCLVRNDKGLGFSIAGGKGSTAYRTGDLGIYISRI
ADGGAAHRDSTLRVGDRVITINGVDMTEARHDQAVALLTGTSPTIALLVERDQAEPGTAG
GSPGLSRARAHSPPPPEPSDSPDQEEGNDDSRLSPHGNHLSRPLQDEYPIEEVTLVKAGG
PLGLSIVGGSDHASHPFGISEPGVFISKVIPNGLACQSGLRVGDRILEVNTIDLRHATHQ
EAVRALLSNKQEIRMLVRRDPSPPGMQEIVIQKQPGEKLGISIRGGAKGHAGNPFDATDE
GIFISKVSSSGAAARDGRLLVGMRILEVSNHSLLGMTHTEAVRVLRAVGDTLVMLVCDGF
DPGNAAAIEASPGIIANPFAVGIVRKNSMESISSIDRDLSPEEMDILQKEVEMVREASQW
EREEMEKVNLGTGPLNLDYRTLAALPTTALQKVNRAPSTEPPRTDSPIRDAPYSPSTQPP
SAHSSTSSLCAGRETRFASIHFPPTALPAKNNSPLSPYETRPGSIQPLSRGGGRPNTSPA
TPDGHSRDGHSSPNPFQHGPSPINSQTSLQPRAPSPDTIDEFSLNPKQAYKAFAAVPHSL
AMLEPPLQDLYGQRNNIHSNLPSPSPEPELNNEVFEDEVEGDGGVGGGLAAPVSPRPSLS
SDRRDYRSLAAVPRLSRASMDMVVKTPSPGGRDSPEQRSFRDRQKYFEIDVKQQTPDSKP
KGRVSLVGADDLKKMREEEERRFEQRAREYLMDDDDDEEDDLVKQMGVLKATGKVLLDGV
EYKVEPVATPPRHYNTPPSYCGSSGPSSVDGKGDSQRNSLEESFRLEQQRPNSMTGLIPV
YPGESGAPIRTAKAERRQKERLRMQSPELAPAGDKDLSPAEKRALEAEKRAMWRAARPYG
LEEDVRQYEQDLAKRLYQSRVRASQGTVPPPQPPNAASSSAASQLRMKSLEQDALKAQMV
IAKSRDGKKRGTLDQLAESPSPAPTPSPTPLEDFSPRGVTSPGRLSLSEKKFDYRQFAAI
PSSKPVYDIQSPDTVDDIQFVDDGSSNPVPAEVPTATSALEEMALYSNKRKLRQGRRSLE
TAVPT
NT seq
5778 nt
NT seq
+upstream
nt +downstream
nt
atgctgaagtgtatccctttgtggcgctgtaaccgccacgtcgagtccgtggacaagcga
cattgcaatttgcaaaatgtccccgaagagatattccgctacagccgcagtctggaggag
cttctcctcgacgccaaccaactccgagatctacccaagcctttcttcagacttctgaac
ctgcggaagctgggcctgagtgacaatgagatccagaggctccctcctgaggtggccaac
ttcatgcagctggtggagctcgacatttccagaaacgacattcctgagatccccgagagc
attaagttctgcaaggcgttggagattgcagacttcagtggaaaccccctctccaggttg
cctgatggtttcactcagctgcgagggctcgcccacctggcccttaacgacgtgtcactg
cagacgctgcccaacgacataggaaacctggccaacctggtgacgctggagctcagggag
aacctgctcaagtccctgcccacgtcgctctctttcctggtgaaactggaacagcttgac
ctgggcagcaatgaactggaagtgttgccagacactcttggtgctctgcctaacctacgg
gagctgtggttggaccgcaaccagctctcctcattgccaccagagctggggaacctgcgg
aggctggtgtgtctggacgtgtcagagaaccgcctggaggaattgccctcggagctcagc
ggcctgctggccctcactgacctgctgctcacacaaaacctcctagagatggtccccgac
agcataggctctctgaagcagctgtccatcctgaaagtggaccagaaccgactgacccac
ctgagcgactccataggagagtgtgagaacctgacggaactcgtgctgaccgagaacctc
ttacagactctgcctcgctcgctgggcaagctgaagaagctgaccaacctgaatgtggac
cgcaaccggctgggcggcgtgcccgatgagatgggctgctgtgccagcctcaacgtgctc
tccctcagggacaaccgtgtggccaagctgcctgcccagctggccgacgccaccgagctc
catgtgctagacgtggcagggaacaggttacagaacctgccatttgccctggccaacctc
aacctgaaggccatgtggctggcagagaaccagtcccagcccatgctcaagttccagacg
gaggatgacgagagcaccggggagaaggtgctcacctgctacctgctgccccagcagccc
tcctctagcctggagaacctgctccagaatagtgtggacgacagctggacagacagcaat
ctgaaccgtgtgtcagtcatccagttccaggaggagaccaccaagcaggaggcggaggac
gacgaggcgaccgcagagcgcaggggtctccagcggcgggcgacaccgcaccacagtgag
ctgaaggtgatgaagaaggtgattgaggagaggaggaacgaggtctacacagccagacat
gatggagagagacagtctcctggtgctgagaagaagcgactgagcaatctgtccagtcag
agccacgactctgcggcatccaacagcacggcctcagccaattcccacgaggagaggcag
ggcctgatgaccacagacctggtgggtgggcgtggccaccaggaggaggaggagctagat
gagatggaggtggagtacgtagagcccacggtgcactttgcggaggagcccatctaccgg
ggtggggacgagaatggtgatgatgaggagggtgaggacggggtcccacacagcgacgaa
gaggaacaacagaggccccagttccccacggagaagcagcgtctgatcaggaaggacaca
ccgcactacaagaagaacttcaagatcaccaagctgcccaaacccgaggcggtggccgcg
ttactgcagggcttcagccccgacgctcacggcccaaatcccgccttgcaccaaactgcc
cccaaggaggaggatgatgatgaagaggaggaggaggaggaggaggaggagtgtatggta
actccgcagcgccacaacaggatagaagagccagagctggaggataggagtctgcttcat
gtcaactcctccctgcagccggtcaagggggtgtcatttgatcaagtcaataatctgctg
attgagcctgctcgaattgaggaggaagagcacaacctgaccattctacggcaaactggg
ggtctgggcatcagcatagccggaggaaagggatccacaccctacaagggggacgatgag
ggaatcttcatctccagggtgtctgaggagggacctgcagcccgggctggggtcaaagtg
ggagacaaactcctagaggtgaacggcgtggccctccagggggcggagcaccacacggcg
gtggaagccctgcgcagttcgggcaccgccgtctccatgagcgtcatccgggagcacatg
gtggagccggagaatgccatcaccacaacaccactgaggcccgaggacgactacttcccc
cgggagagacgggccagcgggctgccgttctgcatggaggccagctcccccgcaggaccc
cgacacaggctgtctacctgcctggtccgcaacgacaagggcctgggcttcagcatcgcc
gggggcaagggctccacagcctaccgcacaggggacttggggatctacatctcaagaatc
gcagatggaggggcggcccaccgagacagcacgctccgcgtaggggacagggtcatcacc
atcaatggtgtagacatgacagaggccaggcatgaccaggcagtagcactgcttaccggc
acctcccccaccatcgccctcctggtggagcgcgaccaggccgagccaggcaccgcaggg
ggctccccaggcctgtcccgtgcccgcgcccactcccccccgccaccagagccctccgac
tcgcccgaccaggaggagggcaacgacgactcgcgcctctcgccccacgggaaccacctg
agccggccgctgcaggacgagtaccccatcgaggaagtgacgttggtgaaggcgggcggc
cctctgggactgagcatcgtgggaggcagcgaccatgctagtcatccgttcggcatcagc
gagcctggtgtcttcatctcaaaggtgatccccaatggcttggcgtgtcagagtggcttg
cgggtcggggacaggatactggaggtgaacactatcgacctacgccacgccacccaccag
gaggctgttagagccctgctctccaacaaacaggagatccgcatgctggtgcgcagggac
ccctcaccgccggggatgcaggagatagtgatccagaagcagcctggagagaagctgggc
atcagcatccgtggtggtgccaagggccacgctggcaaccccttcgacgccaccgatgag
ggcatcttcatatccaaggtgagctccagcggtgcagcggccagagacggccgtctgctg
gtgggcatgcggatcctggaggtgagcaaccacagcctgctgggcatgacccacacggag
gctgtacgggtgctccgcgccgtgggagacaccctggtcatgctggtgtgtgacggcttc
gaccccggcaacgctgccgccatagaggcgtcgccgggcatcattgccaacccttttgcg
gtgggcatcgtgcgtaagaacagcatggagagcatctcctctatagaccgagacctgagt
cctgaggagatggacatcctacagaaggaggtggagatggtgcgagaggcatcacagtgg
gagagagaagagatggagaaagtgaacctgggcactgggcctctgaatctggactaccgg
acgctggccgcactgcccaccaccgctctgcagaaggtcaacagggcaccctccactgag
ccccccaggacagacagtcccattagagatgccccctactcacctagcacacaaccgccc
agtgctcattcctccaccagctccctgtgtgcaggcagggagacccgcttcgcaagcatt
catttcccccccactgcactgcctgccaagaataactcaccattgagtccctatgagacg
aggccgggttccatccagcccctctcccgtggtggcgggcggccaaacacctcgccagcc
actccggacggtcacagcagagacgggcacagcagtcccaaccccttccagcatggcccc
tcccccatcaactcccagacctctctgcagcctcgtgccccctcccccgacacgatcgat
gagttctccctgaatcccaagcaggcatacaaggcgtttgccgccgtgcctcactcgctg
gccatgctggagccgccgctgcaggatctgtatggccagaggaacaacatccactccaac
ctgccttctccttctccagagcctgagctgaacaacgaggtgtttgaggatgaggtagag
ggggacggaggagtgggtggaggtctggcagcccccgtctctccccgaccctccctctcc
tctgaccgtcgggactataggagtctggcagcagtgccacgcctctccagagcctcaatg
gacatggtcgtaaagactccatcccctgggggcagagacagcccagagcagcgctccttc
agggacagacagaagtactttgagatcgacgtgaagcagcagacgcccgacagcaagccc
aaaggccgtgtgtccctggtgggagcagatgacctgaagaagatgagggaggaggaagag
aggagattcgagcagcgggcgcgggagtacctgatggatgacgatgatgatgaggaggac
gacctggtgaagcagatgggagtgttaaaggccacgggcaaggtgctgctggacggggtg
gagtacaaagtggagcctgtggccacgccccccaggcactataacacgccccctagctac
tgtggcagctcagggccctcgtcagtggatggtaaaggagactcccagaggaattcccta
gaggagagcttcaggttggagcagcagaggcccaactccatgactggtctgatcccagtg
taccctggagagtcgggggctcccatccggacggccaaggcagagcggaggcaaaaggag
cggcttaggatgcagagtccagagctggccccggccggagacaaggacctttccccagcc
gagaaacgggctctggaggccgagaagagagccatgtggagggcagcaaggccctatggc
ctagaggaggatgttaggcagtatgagcaggacctggctaagaggctctaccagtcgcga
gtgagggcgtctcagggcaccgtgccgccccctcagcccccaaacgctgcctcctcctcc
gctgcctcccagctcaggatgaagtctctggagcaggatgctctgaaggctcagatggtc
attgctaagtctcgggatggaaagaagcgtgggacactggaccagctggccgagtcaccc
tcgcccgcccccacgccatcccccacccctctggaagatttcagtcccagaggagtgacg
tcaccaggcagactgtccctgtcggaaaagaagtttgactaccgacagtttgctgccatt
ccttcttccaaacccgtatacgacatccagtcccctgacacggtcgacgacattcagttc
gttgacgatggctccagtaacccagtgcccgctgaggtgcccactgccacctcggcgctg
gaggagatggccctctacagcaacaagcgcaagctgaggcagggccgccgcagcctggag
accgccgtgcccacataa
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