Coregonus clupeaformis (lake whitefish): 121569947
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Entry
121569947 CDS
T08357
Name
(RefSeq) polypyrimidine tract-binding protein 2
KO
K14948
polypyrimidine tract-binding protein 2
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cclu03041
]
121569947
Spliceosome [BR:
cclu03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
121569947
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Gene cluster
GFIT
Motif
Pfam:
RRM_5
RRM_1
RRM_8
RRM_occluded
RRM_PARP14_3
GlcNAc-1_reg
K_channel_TID
Motif
Other DBs
NCBI-GeneID:
121569947
NCBI-ProteinID:
XP_041737236
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All DBs
Position
7:complement(49980169..49996440)
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AA seq
521 aa
AA seq
DB search
MDGIGDVAVGVKRGSDELISSSVYNSGSDSITDGTANGNDSKANGSDSKKLRVEDRMEAP
PSRVLHIRKLPNETSESEVIALGLPFGKVTNILTLKGKNQAFLELGTEEAAITMVNYYST
VTPHVRNVPVFIQYSNHKELKTDSGNQRAQAVLQAVSAVQGGGTPTSDLTEASSPVLRII
IDNMFYPVTLDVLQQIFSKFGTVMKIITFTKNNQFQALLQFNDPPTAQQAKVALDGQNIY
NSCCTLRIDYSKLVNLNVKYNNDKSRDYTRPELPAGDGQPAIDPNMAAAFQGKDSNSLLG
ALSPLNAAAAAAAAAGRVALSGHSGSGGVLLVSNLNEEMVTPQSLFTLFGVYGDAQRVKI
LYNKKDSALIQMADANQAQLAMSHLNGQKMYGKVIRVALSKHTSVQLPRDGLDDQGLTKD
FTNSPLHRFKKPGSKNFQNIFPPTTTLHLSNIPTDVTEEDLRLLFSNAGGTVNAFKFFQD
HKMALLQMSTVEEAIQGLIDLHNYNMGDNHHLRVSFSKSTI
NT seq
1566 nt
NT seq
+upstream
nt +downstream
nt
atggacggtattggagatgttgcagttggtgtaaagagaggatcagatgaactgatatca
agcagtgtctacaacagtggttctgacagtatcactgatgggacagccaatgggaacgac
agtaaagccaatgggagcgacagtaaaaagctgagagtggaagaccggatggaagcacct
ccctctcgtgtgctgcacatcagaaaactgcccaatgaaacttcagaatcggaggtcatt
gccctggggttacctttcgggaaggtcaccaatatcctgacgcttaaggggaaaaaccag
gctttcttggagctggggacagaggaagcagcaataaccatggtcaactactactccact
gtgacacctcatgttcgtaacgtccccgtattcatccagtactccaaccacaaagaactc
aaaacagatagtggaaaccagcgggcccaggcggtcctgcaggcggtgtcggcggtccag
gggggaggtacccctacatcagatctaacggaggcgtccagccctgtgctcagaataatc
attgacaacatgttctacccagtcactttggatgtgctgcaacagatcttctcaaagttt
ggcactgtcatgaagataatcacattcaccaagaacaatcagttccaggccctgctgcag
ttcaacgacccaccgactgcccagcaagccaaagtagccctggatggacagaacatctac
aactcgtgctgtacgctccgcatcgactactccaagctggtcaacctgaacgtcaagtac
aacaacgacaagagccgtgactacacccggccagagctccctgccggggatggacagcct
gccatagaccccaacatggctgctgccttccaaggcaaggactccaactctctgctcggt
gccctgagcccgctgaatgctgcggctgcggctgctgctgctgcggggagggtggctctg
tctggtcactctggttccggcggcgtgctcctggtctccaacctcaacgaagagatggtt
acgccccaaagtctgtttaccctcttcggggtgtatggtgatgcccagagggtgaagatc
ctctacaataagaaagacagtgctctgatacagatggctgatgccaaccaagcccagcta
gctatgagtcacctgaacgggcagaagatgtatgggaaggtgatcagggtggctctgtcc
aagcacacctcagtgcagctgcccagggatggactggatgaccagggcctcaccaaggac
ttcaccaactctcccctgcaccgcttcaagaaacccggctccaagaactttcagaacatc
ttccctcccaccaccaccctccacctctccaacatcccaacggacgtaaccgaagaagac
ctccgactgctgttctccaacgccgggggaactgtgaacgcattcaagttcttccaggat
cacaaaatggcgctgctccagatgtcgacggtggaagaggccatccagggtctgatcgac
ctccacaactacaacatgggagacaaccatcacctgagagtctccttctccaaatccacc
atctaa
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