Coregonus clupeaformis (lake whitefish): 121569954
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Entry
121569954 CDS
T08357
Symbol
ptchd1
Name
(RefSeq) patched domain-containing protein 1
KO
K24682
patched domain-containing protein
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
cclu04990
]
121569954 (ptchd1)
Domain-containing proteins not elsewhere classified [BR:
cclu04990
]
Other domain-containing proteins
Patched domain-containing proteins
121569954 (ptchd1)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Patched
Sterol-sensing
Motif
Other DBs
NCBI-GeneID:
121569954
NCBI-ProteinID:
XP_045077371
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All DBs
Position
7:53948416..54040836
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AA seq
942 aa
AA seq
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MVGVPAVSTCWWERLKTLCPERARRMLRQVLQAGLRSSFQALGRFIASHPVFFASAPVLV
SVLLGASFSRYRVEGNVEALLVPKHSLAKIEGNLVDSLFPVNRSKHTLYSDLQTPGRYGR
VIVTSRRGNILDPSHTDLVLKLHRAVVQLQVPVLGFNYSFSHLCLLDDKNTCIIDDIIRA
LEDSQSARFANRSALPLRYPITRLADGRMAYIGHQLGGVQAWGAGPAVQGPGGVSGRGQG
VRSARALQLTYYLQARGALTDRVASQWEQAFCGELGLFGAGHPELSLYPFTSSSLRTDFQ
ESSVLARRPLLASVCVCLVLAVGCCSMRDCVRAKPWLGLLALLSIALSGLTAAGILNLTG
TTYNSTYLGVPFILLGHGLFGTFEMLSSWRRTREDQHVKERVASVFSDVMLRYSGATLLH
QVSLGLAASPLTNLEAVRLFCRCAALGVTVGYLYTLSFYATCLVATGYLETGYRHGCFCR
RVPKKGALDTKPRWYRCLMYTRYQDETHSQTHTHTPNSTHTHTPMRPQDSHLLLGCVQRC
YGDWITNTYVKPFMVLLYLVYISFGLMGFLQVSQGSEPSSLVAMDTGTLLYARAQQRYFS
SYSPVIGFYVYESAPYWNTSVQRDLLEYAKGFQRISWLESYLDFLTERNLSTTSQSRDSF
TRMLRLSFLRQPQFAHFADDIIFAERNEGEEPEMAASRVFLVAKTTENKREEMSVLLDTL
RRLSLTSRVRFLIFNPSFVYLDRYAAAVSSPLRHSLMAVLFLLGLSSLAVVEPLVAVWLS
LTLLSVQFGVLGFMTLWGVELDCVSVLCLISALGHSADCCGPLLATFSSGRGDSRTVWVR
LALERHGVPSLQTLICYTAALLPLAAVRSNLTRSLFRCLVLTAFCSALHALAFLPTLLTF
LPPAKKTGSRQGDRGEGEGLREEVECVEMVDSTRVVDQITTV
NT seq
2829 nt
NT seq
+upstream
nt +downstream
nt
atggtcggcgtgcccgctgtttccacttgctggtgggagaggctcaagacgttgtgtcca
gagcgcgctaggaggatgctgcgccaggtgttgcaggcaggcctgaggagctctttccag
gctctgggtcggttcatagcgagccacccagtcttcttcgcctctgcccccgtacttgtg
tctgtcctgctgggggccagcttcagtcggtacagagtggaaggtaacgtggaggccctg
ctggttcctaaacacagtctggcgaagatagaaggaaacctggtggactcactgtttcct
gtcaacagatctaaacacaccctgtactctgacctgcagactccaggtcgttatggccgt
gttatagtgacatctaggagaggcaacatcctggacccttcacacacagacctagtactc
aagctccaccgtgctgtcgttcagctccaggttccagtgttggggttcaactactctttc
tcccacctctgtcttctcgacgacaagaatacctgcatcatcgatgacatcatccgagcc
ctggaggacagccaatcagcgcgcttcgctaaccgttctgcccttcctctgcgctaccca
atcacacgtctggctgatgggcggatggcctacattggtcaccagttaggaggggtgcag
gcgtggggggcggggcctgcagtacagggtccagggggtgtgtctggtcgaggccaggga
gtccggagcgcaagagctctgcagctgacctactacctgcaggctcgcggcgccctgacg
gacagggtggctagccaatgggagcaggcattctgtggcgagctgggcctgtttggggcg
ggacatcctgaactgagcttataccccttcacttcatcctctctaaggacagacttccag
gagtcgtcagtgctggctcggcgccccctgctggccagtgtatgtgtgtgtttggtgtta
gccgtgggctgttgttctatgagggactgtgtgagagctaaaccctggctagggctgttg
gctctgctctctatcgccctctctggtctcactgctgctggcatccttaacctgactgga
accacttacaactctacctacctgggggtcccattcatactgttgggtcacggactattt
ggcacatttgagatgctgtcgtcatggagaaggacacgtgaggaccaacacgttaaggag
cgtgtagctagcgtattctctgatgtcatgctgcgttactcaggcgctacactgctacat
caggtgtctctgggtctggctgcgtctcctctcaccaacctggaggctgtccggctgttc
tgtcgctgtgctgcattgggcgtaaccgttggctacctttacaccttgtccttctacgcc
acctgtctggttgccacaggttacctggagacaggttacagacacgggtgtttctgtcgc
cgtgtccccaagaagggagcgctggacaccaagcctcgctggtaccgctgtctcatgtac
acacggtaccaggacgagacacactcacaaactcacacacacacacccaactctacacac
acacacacacctatgcgaccccaggactcacacttgttgctaggctgcgtgcagcgttgc
tatggagactggatcaccaacacctatgtgaagcccttcatggttctgctctacctcgta
tacatctcctttggcctgatgggctttctacaggtgagccagggctcggagcccagttct
ctggttgctatggatacagggacgttgttgtacgctcgcgcccagcagcgctacttctcc
tcctactctcctgtgattggcttctatgtctatgagagcgccccctattggaacacctcg
gtacagcgagacctgctggagtatgctaaagggttccagcgaatcagctggctggagagc
tacctggatttcctgacagaacggaacctctccactaccagccaatcacgtgatagcttt
acgcggatgctccgcctctccttccttcgccagccgcaattcgctcatttcgccgatgac
atcatcttcgctgagcgcaatgaaggggaggagccagagatggccgcatcacgtgtcttc
ctggttgccaagacaacggagaacaagagggaggagatgtccgtcctgttagacacgctg
aggcgtctgtctctgacatcacgggtccgatttctcatcttcaacccctccttcgtctac
ctggacaggtatgctgcagcggtgagctctcctctgcgccactccctcatggcggtgttg
ttcctgctgggtctgtcctctctagcagtggtggagcccctagtggccgtgtggctcagt
ctcaccctcctctctgttcagtttggtgttctgggcttcatgactctttggggcgtggag
ctggactgtgtgtctgtgttatgtctgatctcagcgctgggtcactctgcagactgctgt
ggtcctctactggccacattctcctctggccggggggacagccggaccgtgtgggtcaga
ctggcgttggagagacatggcgtcccctctctacagacgttgatctgctacaccgcagcg
ctgctccctctggccgccgtccgctccaacctgacccgctcgctgttccgttgcctagtg
ctgacggcattctgttcagcgctccatgccttggccttccttcccacactgctcaccttc
ctgccgcccgccaagaagacaggaagtagacagggagacagaggggaaggggaggggctt
agagaggaagtggagtgtgtggagatggttgacagcaccagggtggtggaccagatcacc
accgtctga
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