KEGG   Coregonus clupeaformis (lake whitefish): 121569984
Entry
121569984         CDS       T08357                                 
Name
(RefSeq) actin-related protein 2/3 complex subunit 1A-A-like
  KO
K05757  actin related protein 2/3 complex, subunit 1A/1B
Organism
cclu  Coregonus clupeaformis (lake whitefish)
Pathway
cclu04144  Endocytosis
cclu04517  IgSF CAM signaling
cclu04530  Tight junction
cclu04810  Regulation of actin cytoskeleton
cclu05100  Bacterial invasion of epithelial cells
cclu05132  Salmonella infection
Brite
KEGG Orthology (KO) [BR:cclu00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04517 IgSF CAM signaling
    121569984
 09140 Cellular Processes
  09141 Transport and catabolism
   04144 Endocytosis
    121569984
  09144 Cellular community - eukaryotes
   04530 Tight junction
    121569984
  09142 Cell motility
   04810 Regulation of actin cytoskeleton
    121569984
 09160 Human Diseases
  09171 Infectious disease: bacterial
   05132 Salmonella infection
    121569984
   05100 Bacterial invasion of epithelial cells
    121569984
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:cclu04131]
    121569984
  09183 Protein families: signaling and cellular processes
   04812 Cytoskeleton proteins [BR:cclu04812]
    121569984
Membrane trafficking [BR:cclu04131]
 Others
  Actin-binding proteins
   Arp2/3 complex
    121569984
Cytoskeleton proteins [BR:cclu04812]
 Eukaryotic cytoskeleton proteins
  Actin filaments / Microfilaments
   Actin-binding proteins
    Arp2/3 complex
     121569984
SSDB
Motif
Pfam: Beta-prop_EML_2 Beta-prop_THOC3 WD40 WD40_Prp19 WD40_CDC20-Fz Beta-prop_WDR3_1st Beta-prop_WDR5 ANAPC4_WD40 WD40_WDHD1_1st Beta-prop_RIG_2nd Beta-prop_WDR19_1st Beta-prop_CAF1B_HIR1 Beta-prop_Aladin Beta-prop_WDR75_1st Beta-prop_IFT140_1st WD40_Gbeta Beta-prop_WDR35_TULP_N WDR55 Beta-prop_HPS5 Beta-prop_EML Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR3_2nd EIF3I Beta-prop_TEP1_2nd Rax2 Beta-prop_IFT122_1st WDR90_beta-prop_4th WD40_MABP1-WDR62_2nd PEP5_VPS11_N SH3_3 Beta-prop_EIPR1
Other DBs
NCBI-GeneID: 121569984
NCBI-ProteinID: XP_041737321
LinkDB
Position
7:complement(65494867..65505874)
AA seq 356 aa
MSLYSFGLEPLSCHAWNKDRTQIAVSPNNSVVIIYEKKGNEWAKIHELTEHSGRITGIDW
APESNRIVTCASDRNAYVWTLKDKVWKPTLVLVRINRAATCVKWSPLENKFALGSGARLI
SVCYFEKENDWWLSKHIKKSIRSTVMCLDWHPNNILLAAGSSDFHCRIFSAYIKEIEDKP
GPTAWGAKMPFGEMLLETRDCGGWVHSVSFSPSGDHLAWVAHNSSISVADATQGKEVTQL
TMDRLPLVSVLYVSPTEMVAAGHDCCPFQFSYKGPGSLKFVKKLDIPKQTSRGSMSAMQH
FRNLDKKATDDESNELGCLHQNSITQLCIVSGKKTHVDKYSSVGLDGAMVLWDFKH
NT seq 1071 nt   +upstreamnt  +downstreamnt
atgtctctgtacagctttgggctggagcctctctcctgccatgcctggaataaggacagg
acgcagattgctgtcagccccaacaacagtgtggtgatcatctatgagaagaaggggaac
gagtgggccaagatccacgagctgactgagcacagtggacggatcacaggcatcgactgg
gctccggagtcgaaccgcatcgtgacgtgtgcatcggaccgtaatgcgtacgtgtggacc
ctgaaggacaaggtgtggaagcctactctggtgttggtgaggatcaaccgggctgctacc
tgtgtcaagtggtcccccctggagaataagtttgccctgggcagcggagctcgcctcatc
tctgtctgctacttcgagaaggagaacgactggtggctcagtaagcacataaagaagagc
atccggtccacggtgatgtgtctggactggcaccccaacaacatactgctggctgcaggg
tcctctgacttccactgcaggatcttctctgcctacatcaaggaaatcgaggacaagcca
ggcccgacagcgtggggggcgaagatgccgtttggggagatgctgctggagaccagggac
tgtggaggttgggtgcacagtgtctccttctcccccagcggagaccacctggcctgggtc
gctcacaacagcagcatcagcgtggccgacgccacccaggggaaagaggtgactcagctg
acaatggaccgcctacctctagtgagcgtgctctatgtgagccccacagagatggttgct
gcgggccatgactgctgtccgtttcagttctcctataagggcccaggcagtctgaagttt
gttaagaagctggacatccccaagcagacgtctaggggcagcatgtccgccatgcaacac
ttccgcaatctggataagaaggctactgacgatgagagcaatgaactgggctgcttgcac
cagaacagtatcactcagctgtgcattgtgtcaggaaagaagacccacgtggacaagtac
agcagcgtgggtctggacggagccatggtcctctgggacttcaagcactga

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