Coregonus clupeaformis (lake whitefish): 121570195
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Entry
121570195 CDS
T08357
Symbol
ptchd3a
Name
(RefSeq) patched domain-containing protein 3
KO
K24682
patched domain-containing protein
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
cclu04990
]
121570195 (ptchd3a)
Domain-containing proteins not elsewhere classified [BR:
cclu04990
]
Other domain-containing proteins
Patched domain-containing proteins
121570195 (ptchd3a)
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GFIT
Motif
Pfam:
Patched
Sterol-sensing
MMPL
Motif
Other DBs
NCBI-GeneID:
121570195
NCBI-ProteinID:
XP_041737621
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All DBs
Position
7:11163812..11170582
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AA seq
987 aa
AA seq
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MPVFNMAGCRTDCVEKPFSIGFQKFGRFVGRHPWWFFIGPLVISTALGTGFYFLEDMEAN
NIEDQFTPVNGPAKLERKFVEENFPLNNSVYSNQRLYTMGEFASFIAVSRAPNIFTDGAI
KEILSLDKKVREIKLSRGHEQLTYEGLCARKANKCIPNKILDIMNHYGSNIDQTELTFPF
FRFGFTTNFLGYSVGGVNVNSTVIKSAKAIRLFYFLKEGNRSTTDLWLNEFLKVFPSNQS
LNFITVTHSTSLSRQVEFEANTRDVIPLFSITYVIAIVFSIVSCLRFDCVRNKVWVATFG
VLSAGLAVLSAFGMMLHIGVPFVMTVANSPFLILGIGVDDMFILISCWQQTNVHARVEDR
LADTYKEAAISITITTLTDVLAFYIGLMTPFRSVQSFCLYTSTAILFCFLYSITFFGAFL
VLNGRRENSNKHWLTCKEVPEDCPVGRSKWYNLCCVGGAYDRHTGAEEVQPMNHFFKKHY
GPFLVKPWTKVCVILLYSVYLTISIYGCFQIQEGIDLRNLAADDSYVNRYYDDEKAYFYE
YGPNIMVIIRGEFAYWEEKNMLDLESCVEDFKNLAFVEKDIFTSWLKSYKYYGYHTNLNL
SVENVFKTNLGSFLRFYSDFKQDVNFTNNSIRASRFFIQTVNITTAIDEMNMLNNLRDTA
RRCSVPLLVYHPAFIYHDQYAVIVSNTVQNISVTTAVMLLISLLLIPNPLCCLWVTFSIA
SVIVGVTGFMALWDVNLDTISMIILVVCIGFSVDFSAHISYAFVSNKKPTANEKAVEALF
HLGYPILQGALSTILGVIVLSASKNYIFRTFFKIMFLVIFFGLFHGITFIPVFLTFFDFC
SGNSGNVSTQEKKALENQAMTNCQPKNIQEKAIDHDKQIYDNHTFLPDNQQLFQTQPCPS
VWTLTVNTHHTQSGQMCMASTVPMFRVDSQTYEVQMYTASNDTVTVNCNQNLGSGEHHSV
IGNNQPPVLQECNAPVINCSDSADPVP
NT seq
2964 nt
NT seq
+upstream
nt +downstream
nt
atgccggtatttaatatggctgggtgtcgcacagactgcgttgagaagccattctccatt
ggatttcagaagttcggtcgtttcgtgggaaggcatccttggtggttctttatcggcccc
ctggtcatctctacggcgctcgggactgggttttatttccttgaggacatggaggccaac
aacattgaggaccaatttacaccagtgaatggacccgcaaaacttgagaggaaatttgta
gaagagaactttccgctgaataactcggtgtattcaaaccagagactgtacaccatgggg
gaatttgcatccttcatagcggtctcaagagcccccaacatcttcaccgatggagccatc
aaagaaatattaagtttagacaagaaggtccgggaaataaaactttcgagaggtcatgaa
cagcttacatatgaaggactttgcgccagaaaagccaataaatgtattcccaataaaata
ttagatattatgaatcattatggtagcaacattgaccagactgaactcacctttccattt
ttccgttttggattcacaacaaattttctaggatattctgttggtggagttaatgtaaac
tcaacagtcataaagagtgctaaagcaatacgacttttttattttctgaaagaaggtaac
cgctctacaacagatctgtggctaaacgaattcctcaaggttttcccctccaaccagtca
ctgaatttcatcacggttacacattctacatcactgtctaggcaggtggaattcgaggcc
aacaccagggatgttatccccttgttttccattacatatgttatcgccatagtcttttct
attgtgtcttgcttaaggtttgattgtgtgaggaacaaggtatgggtggccacctttgga
gtattatctgcagggcttgctgtgctgtctgccttcgggatgatgctgcatattggagtg
ccttttgtaatgactgtggctaactcacccttcttgatattgggtattggtgttgatgac
atgttcatcctcatatcctgctggcagcagaccaacgttcacgctcgggtggaagaccgc
ttagcagacacgtacaaggaggcggccatttccatcaccatcaccaccctgacggatgtg
ttagcgttctacatcggactcatgactccattccgctctgtgcagtccttctgcctgtac
accagcacggccatcctgttttgcttcctttacagcatcaccttctttggggcgttcctc
gtactgaatgggaggcgtgagaacagcaacaagcactggctgacgtgcaaggaggtccct
gaggattgccccgtgggtcgctccaaatggtacaacctgtgctgtgtgggaggagcttat
gaccgccatactggagcagaggaagtacagcccatgaatcacttttttaagaagcactac
ggcccttttctggtaaagccctggaccaaggtgtgcgtaatcctgctctattcagtttat
ttgaccatcagcatttatggatgcttccagatacaggagggaattgaccttcgcaattta
gctgctgatgattcatatgtgaataggtattatgatgacgaaaaagcctacttttatgag
tatgggccaaatatcatggtaatcataaggggtgaatttgcatactgggaggaaaagaat
atgttggatctcgaatcttgtgtagaggacttcaaaaacctggcctttgttgagaaagat
atctttacatcctggctgaaatcatataaatactacgggtaccatacaaatctgaatttg
agtgttgaaaatgttttcaagactaacctaggttcgtttctgagattctactctgacttc
aagcaagatgtaaatttcactaataattccatccgtgcctcacgcttcttcatccagact
gtcaatatcactactgccattgatgaaatgaatatgttaaacaatctgcgagatactgct
aggagatgctctgtccctctactagtatatcaccctgcctttatataccatgatcagtac
gctgtcatagtgagtaacactgttcagaatatctcagtcaccacagcagtcatgttattg
atctccctcctactgattccaaaccctctctgttgtctgtgggtgacattctctattgct
tctgtcattgtgggcgtcactggtttcatggcattgtgggatgttaatttagacaccata
tcaatgatcattcttgttgtctgcattggattctccgtggacttctctgcacatatttcc
tatgcctttgtttccaataagaagccaactgcaaacgagaaggcagtggaagcgctgttc
catttgggctatcccatacttcagggtgctttgtctaccatactgggagtgatagtgctg
tctgcttccaagaactacatcttcagaaccttcttcaagatcatgttccttgtcatcttt
ttcgggctgttccatggcatcacttttatccctgtctttttgacattctttgacttttgc
agtggcaactcaggcaatgtcagtactcaggagaaaaaggcgctggaaaatcaagccatg
accaactgccagcccaaaaacatccaagagaaagccattgaccacgacaagcaaatctat
gacaatcacacattcctgccagacaatcaacaattattccaaacacagccctgtccctca
gtctggacactgactgtcaacacccatcacacccaaagtggtcagatgtgcatggcaagc
acagttcccatgttcagagttgatagtcaaacatatgaagttcagatgtacacagctagt
aatgacactgtcacggtcaactgtaaccaaaatctggggtctggtgaacatcattctgtg
attggaaataaccaaccaccagttttacaggagtgtaatgccccggttatcaattgctct
gattctgcagatcctgttccttga
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