Coregonus clupeaformis (lake whitefish): 121570264
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Entry
121570264 CDS
T08357
Name
(RefSeq) LOW QUALITY PROTEIN: ribonuclease 3-like
KO
K03685
ribonuclease III [EC:
3.1.26.3
]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
121570264
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cclu03019
]
121570264
03009 Ribosome biogenesis [BR:
cclu03009
]
121570264
03036 Chromosome and associated proteins [BR:
cclu03036
]
121570264
Enzymes [BR:
cclu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.3 ribonuclease III
121570264
Messenger RNA biogenesis [BR:
cclu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
121570264
Ribosome biogenesis [BR:
cclu03009
]
Eukaryotic type
90S particles
RNase
121570264
Prokaryotic type
rRNA processing factors
121570264
Chromosome and associated proteins [BR:
cclu03036
]
Eukaryotic type
Gene silencing
microRNA pathway
Microprocessor complex
121570264
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Helical_CED_Drosha
dsrm
Ribonucleas_3_3
Ribonuclease_3
RVT_1
DSRM_MRPL44
VESA1_N
Motif
Other DBs
NCBI-GeneID:
121570264
NCBI-ProteinID:
XP_045077492
LinkDB
All DBs
Position
7:60399673..60697033
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AA seq
1228 aa
AA seq
DB search
MARELAKTKEQLSTLYQEEQKKIQHKSKLQGLEEEEKCTRFFFCRARQKPILSLYNNQRD
SVTNSDDILRVAREFYGRLYAIKPTDEALMATFLDGLSESPRVEERQPNLCAEELNRALH
YLNTKHNDRTGSEKSSIRPSGITLRTTWRWSSEQFGIGQGCPLAPLPYVIYLELFLQKIR
STPEIPVYQMPGAQGERLKVVAYMDDITIVGINSHSIATATKVVDDYRATTGALVNRGRG
IGDSRRSHSPDRHRKRPRSCSESRERKRGRWEEESDRRSDGSGMSREGERSYTSIRSQDT
ETEASMDRDRDRDQERDREREREKGEGDEKEEDELLKPAWIHRIHAENYYSSDPMDQVGD
STVVGTSKLRDLYERFEEELVKRQECAQSAQPKWDPPKTKLDEEPEECHSHSSSESDCES
DGGGSTCSSSYDSDLFDVIAEIKRKKAHPDRLHDALWYNNPGQMNDGPLCKCSAKSRRTG
ICHSIYPGEESVKECRPMNNNSGKLYHYRITESPPTNFLTDRPTVIEHDDHEYLFEGFSL
FSHMHLTIVNSLCRVICFNIDYTIHFIEEMTPENFCVRGLELFSSYLFQDILELYDWNLK
GTRSERDGKVFSVSFFFPHGGPEWDNQSPGCQKFHFMPRFVCFLPVIVLLFQKPSSVRID
QLDREQFNPEVIFFPIIVHFGIRPTQLSYAGDPQYQKLWKSYVKLCHLLANSPKVKQIDK
QKLTQREVGTQKIRQKNTMRREVTVELSSQSFWKTGIRSDVCQHAMMLPVLTHHIRYHQC
LKHLDKLIGYVFKECCLLQLAMTHPSYHLNFGMNXDHARNSLSNCGICQPKYGDRKVHHM
YMRKKGINTLINIMSRLEQDDPSPSRLFHNERLEFLCDAVVEFLTRWKLELDRFMLYAHG
PDLCRESDLRHAMGNCFEALIATGPSLRRYRCVILALSFKVIPVVWSPQYGTQRDYDLRE
VWLNYPPHPLQVQEPQTDRQLIETSPVLQKLTDFEDAISVMFTHCRLLARAFTLRTVGFN
HLTLGHNQRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTVRRNPLMKCYRAFIAALYIDK
DLEYIHTFMNVCFFPRLKEFILNQDWNDPKSHLQQCCLTLHTEGKEPDIPLYKTLQTVGP
SHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEKIPLPAPDNFPQMAHQKXFIEW
KYRQELKEMKRERERQENEGDEPEDSRK
NT seq
3687 nt
NT seq
+upstream
nt +downstream
nt
atggcccgagagctggccaaaaccaaagaacaactttccaccctctatcaggaagaacag
aagaagatccagcacaagtcaaaactccagggtctggaggaggaggagaaatgcacccgc
ttcttcttttgcagggcacggcaaaaacccatcctgtccctgtacaacaaccaaagggac
tctgtgaccaacagtgatgacatcctgcgggtggccagagagttctacggtaggctgtat
gccatcaagcctaccgacgaggctctcatggccacctttctagatggtctttcagagtca
ccgagggtggaagagcgacaacccaacttatgtgctgaggagctcaaccgggccctgcac
tacctgaacacaaagcacaatgaccggacgggatccgagaagagttctatcagaccttct
gggatcaccttaaggacgacatggcgatggtcttcagagcaattcggcataggccaaggt
tgccccttagcccctctgccgtacgtcatatacctagaacttttcctccagaagatcagg
tcaacaccagaaatccctgtctaccagatgccaggggcccagggagagaggctcaaagtg
gtggcgtacatggacgacatcaccatcgtcggcataaatagtcactccatcgccacagca
acaaaggtggtggacgactatcgtgcaaccactggcgccctcgtcaacagggggagaggc
atcggagacagtcggaggtctcactcacctgacagacacaggaagagacctagaagttgt
tcagaaagcagagaaaggaagcgtggtcgctgggaggaggagagtgaccggaggtctgac
gggtcggggatgagcagagagggagagcgcagctacacctccatccggagccaagacaca
gagacagaggcctccatggaccgagacagggacagagaccaggagagggacagggagaga
gagagggagaaaggggaaggtgatgagaaagaggaggatgagttgctgaagcctgcgtgg
atccaccgtatccatgctgagaactactactccagcgatcccatggaccaagtgggtgac
tcaacggtggtggggaccagtaagctaagggacctgtacgaacgctttgaggaagagctg
gtcaagagacaggagtgcgctcagtcagcccagcccaaatgggaccctcccaagaccaag
ctagatgaggagcccgaggagtgtcacagccacagcagcagtgagtcagactgtgagtct
gacgggggaggcagtacctgctccagtagctatgactctgacttgtttgacgtgattgct
gagatcaagaggaagaaggcccatccagaccgtctgcatgacgcgctgtggtacaacaac
ccaggacagatgaacgatgggccattgtgtaagtgcagtgctaagtccagacgcacaggg
atatgccacagcatctaccctggagaggagtctgtgaaggaatgtcgcccgatgaacaac
aactctggaaagctctaccactacagaatcactgagtctccgcctactaacttcctgacg
gacaggcctacagtgattgagcacgatgaccatgagtacctgtttgaaggtttctctctc
ttctcccacatgcatctcactattgtaaattcattgtgcagagtgatttgtttcaacata
gattacaccattcactttattgaagagatgacaccagagaacttctgtgtgagaggactg
gagctgttctcctcctatctattccaggatatactggagctctatgactggaacctcaaa
ggcactagatctgagagggatgggaaggtgttttcagtgtctttcttctttccccatgga
ggtccagagtgggacaatcaatctcctggatgtcagaagttccacttcatgcctcgcttt
gtctgcttcttacctgtcattgtgttgttgtttcagaagcccagctcggtgcgtattgac
cagctggacagagagcagttcaacccggaggtcatcttcttccccatcatcgtccacttt
gggatccggccaacccagctcagctacgccggggatccccagtaccagaagctgtggaaa
agctatgtgaaactatgccacctgctggcgaacagccccaaggtcaagcagatagacaaa
cagaagctaacacagagggaggtgggtacccagaagattcgacagaagaacaccatgcgc
cgggaggtgaccgttgagctcagcagccagagcttctggaagactggcatccgctctgac
gtctgtcagcatgccatgatgttgccagtgttgacccaccacattcgctaccaccagtgt
ctgaagcacctggacaagctgattggctatgtcttcaaggagtgctgcctactacagctg
gccatgactcaccccagctaccacctgaacttcggcatgaacngagaccacgcccgaaac
tccctgtccaactgcggcatctgccagcccaagtatggagacaggaaggtccaccacatg
tacatgaggaagaagggaatcaacaccttgatcaacatcatgtctcgtcttgaacaagac
gacccctccccctccaggctctttcacaacgagcggctggagtttctctgcgatgcagtt
gtggagtttctcaccagatggaaactggagctggatcgcttcatgttgtatgcccacgga
ccagacctctgcagggagtcagacctgagacacgccatgggcaactgctttgaagcactc
atagcaaccgggccgtctctgcggcgttaccgctgcgttatcctggcgttatccttcaaa
gttattcctgtcgtgtggagcccacagtatggcacacagcgcgactatgacctacgggag
gtttggctcaactatccgccccaccctctgcaggtgcaggagccgcagacggacaggcag
ctgatcgagacgtctccggtgcttcagaagctgacggactttgaggacgccatcagtgtt
atgttcacacactgtcgcctgctggccagagctttcacactgaggaccgtgggcttcaac
cacctcacactgggtcacaaccagagaatggagttcctgggagactccatcatgcagctg
gtggctacagagtacctcttcatccatttccctgaccaccacgaaggacacttaacagta
aggagaaaccctctaatgaagtgttacagagctttcatcgcagcgctctacatcgataag
gacctggagtacattcacaccttcatgaacgtctgcttcttccctcgactgaaggagttc
atcctgaaccaggactggaacgatcctaaatcccatctccagcagtgctgcctgaccctg
cacacagagggcaaggagcccgacatccccctctacaagaccttgcagacagtggggcca
tctcatgcgcggacctacactgtggctgtgtacttcaaaggagagaggataggctgtggc
aagggcccaagtatccaacaggcagagatgggggctgctatggacgcgctcgaaaaaatt
cctctccctgctccagataacttccctcagatggctcatcagaagtgattcattgagtgg
aagtacagacaggagctgaaagagatgaaacgagagagggagcgccaggagaacgaggga
gacgaaccagaggacagcaggaagtaa
DBGET
integrated database retrieval system
