Coregonus clupeaformis (lake whitefish): 121570512
Help
Entry
121570512 CDS
T08357
Name
(RefSeq) intraflagellar transport protein 56 isoform X1
KO
K19685
intraflagellar transport protein 56
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
cclu03037
]
121570512
Cilium and associated proteins [BR:
cclu03037
]
Primary cilia and associated proteins
Other primary cilia associated proteins
121570512
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_19
ANAPC3
TPR_16
TPR_14
TPR_2
TPR_6
DUF5575
Motif
Other DBs
NCBI-GeneID:
121570512
NCBI-ProteinID:
XP_041737909
LinkDB
All DBs
Position
7:25011280..25026711
Genome browser
AA seq
580 aa
AA seq
DB search
MILSRVKPAAVGREIPVNKKIKEKKSPLVEDFLIQRDYLGAITLLEFQRNVGERGEDADL
WLAYCAFHLGDYKRAMEEYKALTEKPDCRPDVWVYLACALFFLGLYKEAEEASLKAPKCQ
LQNRLLFHLAHKFNDEKQLMGFHQELEDVTEDQLSLASIHYMRSHYQEAIDIYKRILLQN
REKMTETGEEDSDCLCRDFLALNVYVALCYYKLDYYDVSQEVLAVYLQSVPDSTIALNLK
ACNHFRLYNGKAAETELKNLIDISSSSFEFAKELIRHNLVVFRGGEGALQVLPALIDVIT
EARLNLVIYYLRQDDVQESYQLIKDLEPTTPQGSVRLNVHQRTEYILKGVVNAALGQEMG
SRDHLKIAQQFFQLVGGSASECDTIPGRQCMASCFFLLRQFEDVLIYLNSVKSYFYNDDA
FNFNYAQAKAAVGNYREAEEIFLLIQNDKNKSDYVYLSWLARCYIMNQKARLAWDLYMKM
ETSAESFSLLQLIANDCYKMGQFYYSAKAFDVLERLDPNPEYWEGKRGACVGLFQLILAS
REPRKALREVLPLLRNNGNPQVEYIIRILKKWAKDNRVSL
NT seq
1743 nt
NT seq
+upstream
nt +downstream
nt
atgattctgtccagagtaaagccagcagctgttggtagggagatcccagtaaataagaag
atcaaagaaaaaaagtcaccccttgtggaggacttcctaatccaaagagactatctgggg
gccattacattgctggagtttcagcgcaatgttggtgagcgaggggaggatgcagacctg
tggttggcctactgtgctttccaccttggtgactacaagagagccatggaggaatacaag
gccctgacagagaaaccagactgccgcccagatgtgtgggtctacctggcctgtgctctc
ttcttcctggggctttacaaggaagcagaggaggcttcactcaaggcccctaaatgccag
ctgcagaatcgactactgttccacttggctcacaagttcaatgatgagaagcagctgatg
ggtttccaccaggagttggaggatgtgacagaggaccagctcagcctggcctccatccac
tacatgcgctctcactaccaggaggccatcgacatctacaaacgcatcctgctgcagaac
agagagaagatgacagagactggagaggaggatagtgactgcttatgcagagacttcctg
gccctgaatgtgtatgtggctctgtgctactacaagctggactactacgatgtgtcccag
gaggtgctggctgtttacctgcagagcgtcccagactccaccatcgctctcaacctcaag
gcctgcaaccacttcaggctctacaacggaaaagcagcagagactgagctgaagaacctg
atagatatctcctccagctcctttgagtttgccaaggagttaatccgacacaacctggtg
gtgtttcgtggcggggagggagccttgcaagtgctgcctgcactgattgatgtcattact
gaggctcgtctcaatctggtcatctactacctcagacaggatgatgtccaggagtcctac
cagctcatcaaagacttagaacccaccacaccacagggcagtgttagacttaatgtacat
cagcgtacagagtacatcttgaagggggttgtgaatgctgcactgggacaggagatgggg
tcgagagatcatctgaagattgctcagcagtttttccagctggttggtggctcagctagc
gaatgtgacaccatccctggcagacagtgcatggcctcttgtttctttctgctcaggcag
tttgaggatgtgctcatctacctcaactctgtcaagagttacttctacaacgatgatgcc
ttcaacttcaactatgcacaggccaaagctgctgttggcaactacagggaggcagaggag
atcttcctgttgattcagaatgacaagaacaagagtgactatgtgtacctgagctggctg
gcacgctgctacatcatgaaccagaaggcccgcctggcctgggacctctacatgaagatg
gagacctcagcagagtccttcagcctcctgcagctcattgccaatgactgctacaagatg
ggccagttctactactcagcaaaggcatttgatgtcttggagagattggaccccaaccct
gagtactgggagggcaaaaggggagcttgtgtgggactctttcagctaattttggccagc
agagaacccaggaaggctttgagggaagtgctgcccttgctgagaaacaatgggaaccct
caggtggaatacatcatcaggattctgaagaaatgggccaaggacaacagagtttctctg
tga
DBGET
integrated database retrieval system
