Coregonus clupeaformis (lake whitefish): 121570543
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Entry
121570543 CDS
T08357
Name
(RefSeq) elongation factor 1-alpha, somatic form-like
KO
K03231
elongation factor 1-alpha
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
121570543
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cclu03019
]
121570543
03016 Transfer RNA biogenesis [BR:
cclu03016
]
121570543
03012 Translation factors [BR:
cclu03012
]
121570543
04131 Membrane trafficking [BR:
cclu04131
]
121570543
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
cclu04147
]
121570543
Messenger RNA biogenesis [BR:
cclu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Trans-acting binding proteins
121570543
Transfer RNA biogenesis [BR:
cclu03016
]
Eukaryotic type
tRNA transport factors
tRNA export factors
121570543
Translation factors [BR:
cclu03012
]
Eukaryotic type
Elongation factors
121570543
Membrane trafficking [BR:
cclu04131
]
Autophagy
Chaperone mediated autophagy (CMA)
Other CMA associated proteins
121570543
Exosome [BR:
cclu04147
]
Exosomal proteins
Proteins found in most exosomes
121570543
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
GTP_EFTU_D2
MMR_HSR1
GTP_EFTU_D4
Gtr1_RagA
Motif
Other DBs
NCBI-GeneID:
121570543
NCBI-ProteinID:
XP_041737951
LinkDB
All DBs
Position
1:complement(52324324..52329306)
Genome browser
AA seq
462 aa
AA seq
DB search
MGKEKLHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVL
DKLKAERERGITIDISLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGV
GEFEAGISKNGQTREHALLAYTLGVKQLIVGINKMDSTEPNYSQKRYEEIVKEVSTYIKK
IGYSPDTVAFVPISGWNGDNMLEASPNMTWFKGWKVTRKDGSSSGTTLLEALDAIQPPSR
PTDKPLRLPLQDVYKIGGIGTVPVGRVETGMIKPGMVVTFAPVNVTTEVKSVEMHHEALT
EAMPGDNVGFNVKNVSVKDIRRGNVAGDSKNDPPMEAAVFTAQVIILNHPGQISAGYAPV
LDCHTAHIACKFAELKEKIDRRSGKKLEDNPKALKSGDAAIVDMVPGKPMCVESFSEYPP
LGRFAVRDMRQTVAVGVIKGVEKKAPSTGKVTKSAQKAQKTK
NT seq
1389 nt
NT seq
+upstream
nt +downstream
nt
atgggcaaggagaagcttcacatcaatattgtggtgatcggccacgtggactctggcaag
tccaccaccactggccacctgatctacaagtgtggtggcattgacaagaggaccatcgag
aagtttgagaaggaggctgctgagatggggaagggctcctttaagtatgcctgggtgctc
gacaagctgaaggcagagagggagcgtggcatcaccattgacatctcactgtggaagttt
gagaccagcaagtactacgtcaccattatcgatgctcccggacacagggacttcatcaag
aatatgatcactggaacctcccaggcggactgtgccgtgctgatcgtggcggccggtgtg
ggtgaattcgaggcgggcatctcaaagaacgggcagacccgcgagcacgccctcctggct
tacaccctgggggtcaagcagctgatcgtgggcatcaacaagatggactccactgagccc
aactacagccagaagcgctatgaggagattgtgaaggaagtcagcacctacatcaagaag
attggctacagcccggatacggtagcctttgttcctatctctggctggaatggagacaac
atgctagaggccagtcctaacatgacctggtttaagggatggaaggtcaccaggaaggat
ggcagttcgtccgggaccaccttgctcgaagctctggatgccatccagcccccgtcccgc
cccaccgacaagcccctccgcctgcccctgcaggacgtctacaagattggaggtattggc
acagtgcccgtggggcgtgtggagacgggcatgatcaagccaggcatggtggtgaccttt
gcccctgttaatgtgacaaccgaggtgaagtctgtggagatgcaccacgaggccctgacc
gaagcaatgcccggagacaacgtgggcttcaacgtcaagaacgtgtccgtcaaagacatt
cgccgtggcaacgtggctggagacagcaagaacgaccctccaatggaggcagccgtcttc
actgctcaggtgatcatcctgaaccacccaggtcagatcagtgctggctatgccccggtg
ctggactgccacaccgcccacatcgcctgcaagtttgctgagctcaaggagaagattgac
cgtcgctcaggcaagaagctggaggacaaccccaaggccctgaagtctggggacgccgcc
atcgtggatatggtcccggggaagcccatgtgtgtggagagcttctcagagtacccgcca
ctgggtcgttttgcagtgcgtgacatgcgccagactgtggcagtcggggtgatcaagggt
gtggagaagaaagctccctccactggcaaggtcaccaagtccgcccagaaggcccagaag
accaaatga
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