Coregonus clupeaformis (lake whitefish): 121570564
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Entry
121570564 CDS
T08357
Name
(RefSeq) interferon a3-like
KO
K05414
interferon alpha
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04060
Cytokine-cytokine receptor interaction
cclu04217
Necroptosis
cclu04620
Toll-like receptor signaling pathway
cclu04621
NOD-like receptor signaling pathway
cclu04622
RIG-I-like receptor signaling pathway
cclu04623
Cytosolic DNA-sensing pathway
cclu05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04060 Cytokine-cytokine receptor interaction
121570564
09140 Cellular Processes
09143 Cell growth and death
04217 Necroptosis
121570564
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
121570564
04621 NOD-like receptor signaling pathway
121570564
04622 RIG-I-like receptor signaling pathway
121570564
04623 Cytosolic DNA-sensing pathway
121570564
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
121570564
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04052 Cytokines and neuropeptides [BR:
cclu04052
]
121570564
Cytokines and neuropeptides [BR:
cclu04052
]
Cytokines
Interferons
121570564
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Interferon
Nsp1_C
Helicase_IV_N
DUF2205
Motif
Other DBs
NCBI-GeneID:
121570564
NCBI-ProteinID:
XP_041737972
LinkDB
All DBs
Position
Unknown
AA seq
186 aa
AA seq
DB search
MGSISLWMCLVLTICTWHKTIGCTWMRTLPRSPSMFQVFSNNTITMLQKMGHEVSRETQI
TFPDKQYRQVDNFKADEQLVFISQTLNAIKKLYSSGKYESTAWDQKGVDRFMNDLHRQTS
ELDQCLKAMKTRLSKSVKRVNKKMSLHFKFLNNYLKREKHSASGWEDIRTVVLAHLRRLD
TTLSSQ
NT seq
561 nt
NT seq
+upstream
nt +downstream
nt
atgggttcaatcagcctttggatgtgcttggtcctgacgatttgcacctggcataaaacc
atcggatgcacttggatgaggacactgcctcggtctccgagcatgttccaagtgttcagc
aacaacaccataacgatgcttcagaaaatgggtcatgaagtctctcgagaaactcagatc
actttccctgacaagcaatacagacaagtcgataattttaaggctgacgaacagcttgtc
ttcatttcgcaaactctgaacgctataaagaaattgtacagcagtggtaaatatgagtcc
accgcctgggaccagaaaggagttgacaggtttatgaatgacctgcatcgccagacgtcg
gagctggaccaatgcctaaaggctatgaaaactagactatcaaaatctgtcaaaagagtg
aacaaaaagatgagccttcacttcaagttccttaacaattacttgaaacgcgagaaacac
agcgcaagcggctgggaagacataaggacagttgtgctggcacacctacgaagactagac
acaacattaagtagccaatga
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