Coregonus clupeaformis (lake whitefish): 121570754
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Entry
121570754 CDS
T08357
Name
(RefSeq) voltage-dependent T-type calcium channel subunit alpha-1I-like
KO
K04856
voltage-dependent calcium channel T type alpha-1I
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04010
MAPK signaling pathway
cclu04020
Calcium signaling pathway
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
121570754
04020 Calcium signaling pathway
121570754
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
cclu04040
]
121570754
Ion channels [BR:
cclu04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
121570754
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
PKD_channel
ETRAMP
Motif
Other DBs
NCBI-GeneID:
121570754
NCBI-ProteinID:
XP_045069451
LinkDB
All DBs
Position
Unknown
AA seq
2252 aa
AA seq
DB search
FAVHTWFERISIMVILLNCVTLGMYQPCENIDCTSDRCQILQAFDAFIYIFFALEMVVKM
VALGIFGRRCYLGDTWNRLDFFIVMSGMVEYSLDLQNINLSAIRTVRVLRPLKAINRVPS
MRILVNLLLDTLPMLGNVLLLCFFVFFIFGIIGVQLWAGLLRNRCYLEENFTLSSGLTLP
APYYQPEEDDERPFICSLAQDNGIMSCGDVPARREGGRTCCLDREDAYHRQSLGLSPEPL
ANGSASAVGLCINWNQYYTRCHTGHSNPHKGAINFDNIVYAWIVIFQVITLEGWVEIMYY
VMDAHSFYNFIYFIFLIIIGSFFMINLCLVVIATQFSETKQREHQLMQEQRAQCLSSSTL
ASLHEPGDCYEELFQLVCHMLRKARRRSVALYNQLRGRPLPPPPTRGRGRGRGGGEGGGN
ANGGDRHHPRQPRQSHCPHQSKLDPIHSSQPLGNSIALAVPQNTEDCPQCAAALSLREGA
GAVGDSANGEEEEGAVEETDREENHLEEKAEEGEGVKKKRKRRSCFGHCKDMWDEMRKKL
WGIVESKYFNRGIMIAILINTISMGIEHHNQPEELTNVLEISNIVFTSMFTLEMILKLTA
FGFFAYLRNPYNIFDGIIVIISVCEIIGQSDGGLSVLRTFRLLRVIKLVRFMPALRRQLV
VLMKTMDNVATFCMLLMLFIFIFSILGMHIFGCKFSLKTETGDTVPDRKNFDSLLWAIVT
VFQILTQEDWNMVLYNGMASTSPCAALYFVALMTFGNYVLFNLLVAILVEGFQAEGDANR
SYSEDDRSSCNFDGNSDKLKDSLHLSDPKICTLTPNGHLDLSPAPTGLYTADRLTFALGS
RKNSVISLGRANLEGRALCPGRSSLYHNWGRPAFQTQAMWGRRSSWNSLGRPSRALGLGL
GVGGGGSLRSCSPHAANPAEQESLLSPPHPPPHLAHPPPLLARHFVPQRDRRALSLELPE
LLQVPGTPLAQLLPYPRKKSFSGGLVGGGAGGEHQDCNGKAPSAQLQLQLQLQLPQHPHP
HPQLLTEVFPQVNTRKDREDLDDDIDYSLCFRIQKMMEVYRPEWCETREDWSVFLFSPQN
RFRRVCQSIIAYKMFDYVVLAFIFSNCITVALERPKIMQGSLERVFLTISNYVFTAIFVA
EMTLKVVSMGLYIGEQAYLKSSWNVLDGFLVFVSLIDIVVSMAGGAKILGVLRVLRLLRT
LRPLRVISRAPGLKLVVETLITSLKPIGNIVLICCAFFIIFGILGVQLFKGKFFYCFGLD
VKNITNKSDCLQANYKWAHHKYNFDNLGQALMSLFVLASKDGWVNIMYHGLDAVGVDQQP
VINNSPWMLLYFISFLLIVSFFVLNMFVGVVVENFHKCRQNQEVEEAKRREDKRRRRMEK
KRRDAQKIPYYASYSSLRLWIHTLCTTYYLDLFITFIICINVITMSLEHYSQPRSLDLVL
KYCNYFFTSTFVLETLLKLTAFGFRRFFKDRWNQLDLAIVLLSVMGITLEEIDYSASLPI
NPTIIRIMRVLRIARVLKLLKMAKGMRALLDTVVQALPQVGNLGLLFMLLFFIYAALGVE
LFGELVCNEDYPCEGMSRHATFENFGMAFLTLFQVSTGDNWNGIMKDTLRECPMDYGPDY
SCNPSLQFISPMYFVSFVLTAQFVLINVVVAVLMKHLDDSNKEAKEEAEMDAEIELELAT
GALCCMGPEGVCAGGKKGGGAGGGGGGGVGVGGGVERGMEVPSSSSVGNTHHHVATTHPG
PPHDPNNRDLYSPAQESQWLDSVSLLIKDSFEGEMMMIDNLSGSVFHHYSSSSLPVWKDC
KSHPQLEQIRLAEIEQASLRSDQMSDKSSSPALPDDLSLDDQSVHQLLVREGKDEKGSDS
QGLEEAGGGGGSLTQAQTGGSRHCRAQSSVAKEGTPLLVEVGVHQRHEIPSQHSPGGASC
RSTKAGEGSDEGGRGGGGEGGGEGGGGGGGGGGREGAASASGSPALIRLPAEFFHPVAAA
ALPVPLRARVGRTSQGLRLTSPASWASLRSPGAHSRVLCTQYQSHSDSSLATGSSDGSLQ
TTLEEGLSFSVSPPQDLKPPLPLLCPLPHPLPEDPTSCPPGQTLRPRPSSSSGPALTLQA
TRGHQRSQSSGRGSISPGYTREDSMDPDLCDLEDLGIGISSSIGGCSSSQAGNSEHLSET
LSSLSLTSLLSPASLAPPGVKKCNSTGSLDQGARRGEGRQILGLELDSQGFLANPWGESG
GGRGEEGQLGEATGLKGNSSSQTTVGSCSKNR
NT seq
6759 nt
NT seq
+upstream
nt +downstream
nt
tttgctgtccatacgtggttcgagaggatcagtatcatggtgattctgctcaactgtgtc
accctggggatgtaccagccctgtgagaacatcgactgcacttcagaccgctgccagata
ctacaggctttcgatgcgttcatctacatattctttgcgttggagatggtggtgaagatg
gtggcactgggaatcttcgggagacgctgttaccttggcgacacctggaacagactagac
ttcttcatcgtcatgtctgggatggtggagtactcgttggacctgcagaacatcaacctc
tcagccatcaggacagtcagggtcctcagacccctcaaagccatcaacagagtacccagt
atgcgtatcctggtgaatctcctcctggacactctgcccatgttgggaaacgtcctcctg
ctttgtttcttcgtcttcttcatcttcggcatcatcggagtgcagctgtgggcgggacta
ctgaggaaccgttgctacctcgaggaaaacttcaccctttcgtcaggtctgaccctgccc
gccccgtactaccagccggaggaggatgacgagcgccctttcatctgctctctggcccag
gataacgggatcatgtcatgtggtgacgtcccggcccggagggaggggggaaggacctgc
tgtctggacagggaggatgcctaccaccgccagtccctggggctcagccctgaaccacta
gccaacggttcagccagtgcagtgggtctctgtatcaactggaaccagtactatactaga
tgccacactggacatagtaatccacacaagggggcaatcaacttcgataacattgtatac
gcctggattgttatcttccaggtgatcactctggagggctgggtagagatcatgtactat
gtaatggatgctcactccttctacaacttcatctacttcatcttcctcatcattattggc
tcgttcttcatgatcaacttatgtctggtggtcatcgccacccagttcagtgagaccaag
cagcgggagcaccagctgatgcaggagcagcgggcccagtgcctgtcctcctctaccctg
gccagcctgcatgaaccgggggactgctacgaagagctcttccagctggtctgccacatg
ctgcgcaaggcccgcaggagatctgtagccctgtataaccaactgagaggaaggcctctg
ccaccaccacccactagagggagaggaagaggaagaggaggaggggaaggaggagggaat
gcgaacggaggggacaggcatcacccgaggcagccgcgacaatctcactgtcctcaccaa
agcaagctggacccaatccacagctcccaaccactgggcaactccattgccctggccgtc
cctcaaaacacagaggactgccctcagtgtgctgcggcactgtcactcagggagggggcg
ggagctgtgggcgactcagccaatggggaggaggaggagggggccgtggaggagacggac
agggaggagaaccacttggaggagaaagcagaagagggggagggagtgaagaagaagagg
aagaggaggtcgtgttttgggcactgtaaggacatgtgggatgagatgaggaagaaactt
tggggcatcgtggagagcaaatacttcaatagaggaatcatgatcgctattctcatcaat
actatcagcatggggatagaacatcacaaccagccggaggagctgactaacgtgttggag
atcagtaacattgtgttcaccagtatgttcaccctggaaatgatcctcaagctgaccgcc
tttggcttcttcgcctacctgaggaacccctacaacatcttcgacggcatcatcgtcatc
atcagtgtgtgtgagatcataggccagtctgatggaggtctgtctgtcctgaggaccttc
agactgttgagggtgatcaagctggtgcgcttcatgcccgcgctgcgcagacagctggtg
gtgctgatgaagaccatggacaacgtggccaccttctgcatgctcctcatgctcttcatc
ttcatcttcagtatcctggggatgcatatctttggctgtaagttcagtctgaagacagag
actggagacactgttcctgacaggaagaactttgactctctactgtgggccattgtcact
gtgtttcagattctgactcaggaagactggaacatggtgctgtataatggaatggcctcc
acctctccctgtgctgctctctactttgtggctctaatgaccttcggcaactacgtcctc
ttcaacctgctggtggccatcttggtagagggctttcaggctgagggggatgccaaccgg
tcgtactccgaagacgacaggtcctcgtgtaactttgacgggaactctgacaagctgaag
gactcgcttcatctctctgaccctaagatctgcaccctaacccccaacggtcacctggac
ctgtccccagcgcccacgggtctgtacacggccgacaggctcactttcgctctgggctca
cgcaaaaacagtgtcatctctctgggcagggctaacctggagggcagggctctgtgtccg
ggacgcagctccctgtaccacaactggggccgccctgccttccagacccaggcaatgtgg
ggccggcggtccagctggaacagcctgggtcggccctcccgagccttgggcctgggattg
ggggtaggaggagggggcagcctgcgctcctgcagcccccacgccgccaacccagccgag
caggagtccctcctctccccccctcaccctcccccacaccttgcccaccctcctcccctc
ctggcccgacactttgtcccgcagcgggaccgccgggcgctgtccttggagctaccggag
ctcctccaggtcccggggacccccctggcgcagctgctgccttaccccaggaagaagagc
ttctccggtgggctggttggtggaggggctgggggggagcaccaggactgcaatgggaag
gccccctcggcccagctccagctccagcttcaacttcagctgccacaacatccccatccc
catccacaactactgacagaggtgttccctcaggtcaacacacgcaaggacagggaggac
ctggacgatgacatcgactatagtctgtgtttccgtatccagaagatgatggaggtttac
aggccagagtggtgcgagaccagagaggactggtctgtcttcctcttctctcctcagaac
aggttcaggcgggtatgccagtccatcatagcctacaagatgtttgactatgtggtgcta
gcattcatcttctccaactgtatcaccgtggctctagagagacccaagatcatgcagggc
agcctggaaagagtattcctaactatctccaactacgtcttcacagccatctttgtagcg
gagatgacgctcaaggtggtgtctatgggcctgtatataggggaacaggcatatctgaaa
agcagctggaacgtgttggacggcttcctggtctttgtgtcgttgattgacattgtggtg
tccatggcgggcggggctaagatcctgggggtgctgagggttctcagattgctccgcaca
ctgcgccccctcagggtgatcagtcgagccccaggtctgaagctggtagtggagactctg
ataacgtctctgaaacctataggaaacattgtccttatctgctgtgctttcttcatcata
tttggtatcctgggggtgcagctgttcaaagggaagttcttctactgctttggcctcgac
gtcaagaacatcaccaacaagtctgactgtctgcaggccaactacaaatgggcccatcac
aagtacaactttgacaacctgggacaggctctgatgtcactgtttgtgctggcttcgaag
gacggctgggtcaacatcatgtaccatggcctggacgctgtaggggtggaccaacagcca
gtgatcaacaacagtccgtggatgctcctctacttcatctctttcctcctcatcgtcagt
ttcttcgttctcaacatgtttgtgggcgtggtggtggagaacttccacaagtgccgtcag
aaccaggaagtggaagaggctaaaaggagagaggataaacgacggagacgcatggagaag
aagaggagggacgcccagaagatcccctactatgccagctacagctccctccgcctgtgg
atccacactctgtgtaccacctactacctggacctcttcatcaccttcatcatctgtatc
aacgtcatcaccatgtcactggaacactacagccagccacgatctctggatctagtgttg
aagtactgtaactatttcttcacgtccacctttgtactggagaccctcctgaagctcacc
gccttcggcttccgacgcttctttaaagacaggtggaaccagttggatctggccatcgtg
ttgctgtcagtgatgggcatcactctggaggagatcgactacagcgcttctctccccatc
aaccctaccatcatacgcatcatgagggtgttgaggatcgcacgagttctgaagctgctg
aagatggctaaaggaatgagagctctgctggatacggtggtccaagccctaccacaggtg
gggaacctgggcctgctcttcatgctcctgttcttcatctatgcagcactgggggtggag
ctgtttggagaactggtgtgtaacgaggactacccgtgtgaggggatgagccgccatgct
acctttgagaactttggcatggccttcctcaccctgttccaggtctccactggggacaac
tggaatggaatcatgaaggacacgttgagggagtgccctatggactacgggcctgactac
tcctgcaaccccagcctgcagttcatctctcccatgtactttgtgtcctttgtgttgacg
gcccagttcgtcctgatcaacgtggtggtggcggtgttgatgaagcacctggatgactcc
aacaaggaggccaaggaggaggcggagatggatgctgagattgagctggagctggccacg
ggggccctctgctgcatgggaccagagggagtctgcgcaggagggaagaaaggtggagga
gcagggggaggtggcgggggaggtgtgggagttggaggaggagtggagagagggatggaa
gtcccaagcagttcctccgtggggaatacgcatcatcatgttgcaacaacgcatccaggc
ccgccgcacgatccgaacaatcgcgatctctactctcctgcacaggagagtcagtggctg
gacagtgtgtctctgctgataaaggactcatttgaaggagagatgatgatgattgacaac
ctctctggatctgtcttccatcactactcctctagctctcttcctgtctggaaggactgc
aagagccacccgcaactagagcagatccggctggcagagatagagcaggcgtctctgagg
tcagaccaaatgtcagacaagtcgtcctctccagccctacctgatgacctcagcctggac
gaccagagtgtccaccagctgctggtgcgggagggcaaggatgagaagggcagtgactcc
cagggcttagaggaagctggtggaggagggggctccctgacccaggcccagacagggggg
tcgaggcactgcagggcccaaagttcagtagccaaagaggggactccactgctggtggag
gtgggggtccatcagagacacgagatcccatcccaacacagccctggtggggcctcctgc
agaagcactaaggcaggagaaggatcagatgagggaggaagaggaggaggaggagaagga
ggaggagaaggaggaggaggaggaggaggaggaggaggaagagaaggagcggccagtgcc
tctggttctcctgctcttatccgtctgccagcggagttcttccaccctgtggcagcagcg
gccctgccggtgccccttagggccagagtagggcgcacctcgcagggtctcagactcacc
tccccggcctcctgggcctccctgcgctccccaggagcccacagccgggtgctctgcacg
cagtaccagtcccatagtgactcgtctctggccacggggagctccgatggcagcctccag
accaccctggaggaaggactcagcttcagtgtttcgccccctcaagacctgaagccccct
ctccccctgctctgccccctgccccacccactccctgaggaccccaccagctgcccacca
ggccagactctgagaccgcggcccagctcctcgtcaggccctgccctcaccctccaggcc
actcggggccaccagcggagccagagcagcggcaggggtagcatcagccccggctacacc
cgggaggactccatggaccccgatctgtgcgacctggaggacctgggcatcgggatcagt
tcgtccatcggggggtgtagctccagccaggcaggcaacagcgaacacttgtcggagacg
ctaagcagcctgtcgctcacatcgttgctctcgcccgcctccctggcaccgccaggggtg
aagaaatgcaacagcacggggagcttggaccagggggcgaggaggggggaggggagacag
atcctaggattggagttggactcccagggcttcctggccaacccgtggggagagagtggg
ggaggcagaggagaggagggacagttgggagaggcaacgggcctcaaggggaatagttca
agccaaacgacagtagggtcctgtagtaaaaacagatga
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integrated database retrieval system
