Coregonus clupeaformis (lake whitefish): 121570996
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Entry
121570996 CDS
T08357
Name
(RefSeq) VPS10 domain-containing receptor SorCS3-like isoform X1
KO
K27083
VPS10 domain-containing receptor SorCS3
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cclu04131
]
121570996
Membrane trafficking [BR:
cclu04131
]
Endocytosis
Others
Others
121570996
Endosome - Lysosome transport
121570996
Endosome - Golgi transport
121570996
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sortilin-Vps10
Sortilin_C
PKD
PKD_4
GBP_PSP
DUF6085
Motif
Other DBs
NCBI-GeneID:
121570996
NCBI-ProteinID:
XP_041738165
LinkDB
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Position
1:56731735..56796810
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AA seq
1244 aa
AA seq
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MVVSGSVWFWAILTCVLSSFHNMLTAYAEISWPESSTTRSVWLNRMDKLTLELRANPKST
RVKIPKYIVKESAFSRAFKMEPIDGKAAVPKGGRRMAKDLDRVIEKVPPDAISSGRDKTA
PHRSRYFTADSKTSDSVFEDNDGTFALSNRTKTKRSTAFGEYSDRSQIGGPGDAFSADKL
LEPFGVYSPRREYRRTGEDARTGPSQSEPLLVTSTFPLFGDSGHNQAMGHWVGHNSSVIL
TLTKQYDFNLGAFTESSLWRSVDYGSTYIKLNNKVGSTLACLYVCPTNKRKIMMLSDPEL
EHSVLISSDEGASFEKHPINFYMDGLLFHPTQENWLLASSPDNKVYSTMDFGRKWQLVSE
NVTPGRFFWAQTGLDREADVVHMETHIAKGRAQYVTCRAQRCTESNRQYLFPGHIDQNSL
VVQDDYVFVQVTKSGQASYFVSYMRESFKQIQLPKYCLPKDMHIISTDKKQVFAAVQEWN
QNDTYSLYISDSPGVFFTLSLENVRTRREAGGNLLVDMYKVEGINGIFLANKLVDHEVKT
FITYNKGQTWAFLQAPITDVAGNSLHCILPFCSLHLHLDMPVNPYLPGRIFSKDSAPGII
VATGNIGTELSSTNLGMFITSDAGNSWRKIFEEELGVWFLDNGGALVAVSLVATVPIRHV
WISLDEGKKWDRHSFSLAPLFLDGALMQPENHIIIFTGHLSRVSEWQLIKIDYKAIFSRR
CMDGDYQTWHLHNKGEPCVMGEKQTFMKRRPGNRCMLAQDYSRVISSEPCICRAYDFECD
YGYERQADGKCSPAFWFDPITVTRSCSTSQNYLNSTGYRKVLSNNCKEGGKDVYSPRKQH
CSPRPPRGLRLTTSHGDLTANLGSNVTFLVHLDDGNPLWTYIQLDFGDGITVMYNLSRRG
DGIKHSYRAPGIFRVTAHAENSQGYDSSSMFLHITSPVERVYLSAPIVAIRKKEANLTAV
VWPVHHRTLTFFWWFENSSESLITLGGSIAYTFQKEGMNRVIVQVSSGCNILQDTKVIIV
KEFFKSLLLSFSPTLDEHNPDIPKWREDIGRVVRTAVSQVSGFPEEQLLVSLFPGVPTTA
ELFILPETQLPEHGKGDKEGLISDILINALNQGLIQFELKPDTQIIVYITQLTSAPLVDS
NPIHSSSVMLMLLSVAFVGLAAFFIFKFKRKIPWIHVQAEENQEKEPEMIGTVGQNNPMS
KMKHSEFPSEKELMVKELEARSSGENGRNGERVITREFPTCTNV
NT seq
3735 nt
NT seq
+upstream
nt +downstream
nt
atggtcgtctcgggttcagtttggttttgggctattttgacttgcgttttaagctctttt
cacaatatgttgacagcatacgctgaaataagttggccagagagttccacaacgaggagc
gtttggcttaaccgtatggataaattgactttggagctgcgcgcaaacccaaaatccaca
agggtcaaaatccctaaatatatcgtcaaggaatctgccttttccagagcttttaaaatg
gaaccaattgatggaaaagcagcggttccaaagggtggaaggagaatggcaaaggacttg
gaccgagttattgagaaagtgccacctgatgctatatcttctggcagagataaaacggcg
ccacaccgttccagatattttactgctgacagcaaaacgtctgacagtgtttttgaagat
aatgacggcacatttgctttaagtaaccgtacaaaaacaaagcgaagtacagcatttggc
gaatattcggacaggagtcaaattggaggtcctggtgacgcattttcagccgataagctt
ttggagccttttggcgtttatagtccgaggagagaatacagaagaactggggaagatgca
agaactggtccgagccaaagtgagccgcttctggtcacctccacttttcctctattcgga
gactctgggcacaaccaggcgatggggcactgggttggacacaacagcagcgtgatcctg
accttgacgaagcagtatgactttaacttgggtgctttcactgagagttctctctggaga
tcagtggactatgggagcacttatataaaactgaataataaggttgggtcaaccttggct
tgcctctacgtctgcccaaccaacaagagaaagataatgatgcttagcgacccagagctg
gaacacagtgtactcatcagctcggatgaaggtgccagcttcgagaagcatcccattaac
ttctacatggacggactgctgtttcatccaacacaggaaaactggctgctggctagcagt
cctgacaacaaggtgtacagcacaatggactttggtagaaaatggcagttggttagtgag
aacgtgactcctggacggttcttctgggcacaaacggggctggacagagaggcagatgtg
gtccacatggagacccacatcgccaaaggacgtgctcagtatgttacatgcagagctcaa
cgatgcacagaatctaacagacaatacctgttcccgggacacatagaccaaaattctctg
gttgttcaggacgactatgtgttcgttcaggttaccaagtcagggcaggcgagttacttt
gtgtcctatatgagggaatcatttaaacaaattcaactacccaaatactgtcttcccaag
gacatgcacatcatcagtacagataagaagcaggtgtttgcagctgtacaggagtggaac
cagaatgacacctacagcctgtatatctcagactctccaggggtcttcttcactctgtct
ctagaaaacgtcagaaccagaagagaggcaggcggaaatttactggtcgacatgtataag
gtagaaggaataaatggcatatttctcgccaacaaattggtggaccatgaagtgaagaca
ttcattacctataacaagggtcagacctgggcctttcttcaagcccctatcaccgatgtg
gctggaaacagtctgcactgcatcctgccattttgttctctgcatctgcacctggatatg
cctgtgaacccttacctgcctggacgcatcttcagtaaggactcagcaccagggatcatc
gtagccacaggcaacattggtacagagctgtcctccactaaccttgggatgtttataaca
tctgatgctggcaatagctggagaaagatttttgaagaagaactcggtgtttggtttctt
gacaatggaggtgctttagttgcagtgtctttagttgcaacagtacccatccggcacgta
tggataagtctggacgagggtaagaaatgggatcgtcacagtttctctctggctcctttg
tttctggatggagctctcatgcagccagagaatcacatcatcattttcactggacactta
agtcgtgtttcagaatggcagcttataaagattgactacaaagccatctttagcaggaga
tgcatggacggagattatcagacttggcacctacataacaagggagagccatgtgtgatg
ggagagaagcagacctttatgaaacggaggccagggaaccgctgtatgctggcccaggac
tactcccgagtcatatcctcagaaccatgcatctgcagggcatatgattttgaatgtgat
tatgggtatgaacgtcaagctgatggaaagtgttcccctgcattttggtttgacccaatc
acggtaacaagaagctgtagcactagccagaattacctcaatagcacagggtacaggaag
gttttgtctaataactgcaaagagggaggaaaggatgtgtactcccccaggaaacagcat
tgttcccccaggcctcccagaggcctcagactgaccaccagccatggagacctcaccgcc
aacctgggcagtaacgtcaccttcctggtgcatctggacgatggaaacccgttgtggact
tatatccagctagactttggggatggcatcacggtcatgtacaacctgagccggagaggc
gatgggatcaaacacagctatagagcacctgggatcttcagagtgacagcacatgctgag
aacagccagggatatgacagcagctccatgttcttacacatcaccagcccagtggagcgt
gtgtatctctcagctcctattgtggccatcaggaagaaggaagccaacctaactgctgtg
gtctggcctgtccaccacagaacactcaccttcttctggtggtttgaaaacagctccgag
tccttaataaccttgggtggaagcattgcgtacacgtttcagaaggagggtatgaacagg
gtcattgtccaggtgtcttctgggtgcaacatactgcaggataccaaggtcatcattgtt
aaagagttcttcaaatccttgctgttatcattctctccaactttggatgagcacaaccct
gacatccccaagtggagagaggacattggccgcgtggtgaggacagctgtgtcacaggtg
tctgggtttccagaggagcagctgttggtatcgttgtttccaggtgttccaacaacagca
gaactatttatcctgcctgagactcagttgcctgaacatgggaaaggggacaaagagggc
ttaatatcagacattcttataaatgccctgaaccaaggattgatccagtttgagttgaaa
cctgacactcaaataattgtttacatcacacagctaacttcggcacctctggttgattcc
aacccaattcacagtagctcggtcatgctgatgttgctatctgtggcgtttgttggttta
gctgcattcttcatcttcaagttcaaaaggaaaatcccttggatccatgtccaggctgag
gagaaccaggaaaaggagccggagatgatcggcaccgtcgggcagaacaaccccatgtcc
aagatgaagcacagtgagttcccctcagagaaggaacttatggtgaaagaactggaggcc
aggagcagtggagaaaatggaagaaatggggagagagtgatcacaagagagtttcctact
tgtactaatgtctaa
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