Coregonus clupeaformis (lake whitefish): 121571027
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Entry
121571027 CDS
T08357
Name
(RefSeq) protocadherin-7 isoform X1
KO
K16498
protocadherin delta 1
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
121571027
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
cclu01009
]
121571027
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
cclu04515
]
121571027
Protein phosphatases and associated proteins [BR:
cclu01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
121571027
Cell adhesion molecules [BR:
cclu04515
]
Cadherins
Protocadherins
121571027
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_2
Cadherin_CELSR2_9th
Mid2
KIAA1549
TMEM154
Adeno_E3_CR2
Motif
Other DBs
NCBI-GeneID:
121571027
NCBI-ProteinID:
XP_041738186
LinkDB
All DBs
Position
8:complement(3116733..3306677)
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AA seq
1257 aa
AA seq
DB search
MRTTGAVDYLCYSILILQLLNQPAAKQVLRYRLAEEGPADVRVGNVAADLGIVAGSGEVT
FTLESGSDFFKIDNITGELTTNERRIDREKLQQCQMIFDENECFIDFEVSVIGPAQSWVD
LFEGKVIILDINDNTPSFPSPVLTLSVEENRPIGTLYLLPTATDRDFGRNGIERYELIQD
SGESSRRLGSSSGGRGADRRFDEGAGRSSVFELQVADTTDGEKQPQLIIKGALDREQRDS
YELTLRVRDGGDPPRSSQAILRVMITDVNDNSPRFEKAVYEADLPENSSPGAPILQLKAA
DADVGVNGQIEYVFGAATESVRRLLRLDESSGWLSVLHRIDREEVSQLRFTVMARDRGQP
PKMDKATVVLNIKDENDNVPAIEIRKIGRIFLKDGVANVAEDVVVDTPIALVQVSDRDQG
ENGIVTCTVVGDVPFQLKPASEIEGEMNKKKYFLHTSAPLDYEATQEYNVVIVAVDSGSP
SLASNNSLIVKVGDFNDNPPIFSQNVVEVSFPENNAPGERVTTVQAIDADSGKNAEIAYS
LDSSVNGIFSIDADNGDIRVNTILDREQTERYQFKVIAKDKGMPILQGSATVVVLVADKN
DNEPKFMQDVFTFYVKENLTPNSPVGMVTVIDADKGQNAEMSLFVEEEEEIFSIENDTGT
IFSTMSFDREQKTTYTFRVKAVDSGDPPRSATATVSLFVMDLNDNPPSVTFPINSSYTLL
PPSSNIRTVVRTVMATDTDTGINADLNYSIIGGNPFKLFEIDGGSGVISLVGKMEKKHYG
LHRLVVQVNDSGQPSQSTTTLVHVYVNETLSNSTIVEAQVAKSLGTPLNTNVAGDPNYDL
GKQRLSIVIGVVSGIMTVILIILIVVMARYCRPKNKNGYEAGKKDHEDFFTPQQHDKGKK
PKKNKKNKQPLYSSIVTVEASKPNGQRYDGVNEKLSDSSGMGRYRSVNGGPGSPDLARHY
KSSSPLPTVQLHPQSPTAGKKHQAVQDLPPANTFVGTGDNISLGSDHCSDYSSQTISKYN
KQPFRRVTFSVVSQPQDPHQQGSLQSCYDSGLEESETPSSKSSSGGPRLGALPLPEDSYE
RTTPDGSVGEAEHMENDTRTLPDVAMTGKCTRECDEYGHSDSCWMPVRTSPERRPKTTTT
QQPKLSTFMTGGGSGSIPPDQQQQQQHPGSQEALVAMANGDPSSHVMLGNDRNRNLLNKK
MASSSSSYEAFGSPSFSPPGVEEGVVVGHPIEEIPLAPTGEYKPSSCGTLTRREVYL
NT seq
3774 nt
NT seq
+upstream
nt +downstream
nt
atgaggactactggcgcagtggactatttatgctacagtatactcatcctgcagctgctg
aatcagcccgctgccaagcaagtgctccgatatcgcttggctgaggagggaccagccgat
gtcagggtagggaacgtagccgcagacctcggaatcgttgccgggtctggcgaggtgaca
tttaccctcgagtccggatctgattttttcaaaatagataatataacaggcgagctgacc
accaatgaacggcggatagaccgtgaaaaattacagcagtgccaaatgatatttgatgaa
aacgagtgtttcatagattttgaagtgtcagtaattggaccggctcagagctgggtcgac
ctgttcgaggggaaagtcattattttagacataaatgacaacaccccatctttcccctct
ccggtgctgaccctgtcggtggaggagaacaggccgattggcactctctatctcctaccc
acggccacggacagagatttcggtaggaacggaatcgaaagatatgagcttattcaagac
agcggggagagctccaggcgcctgggctcgagctcaggggggcgcggggcggacaggaga
ttcgacgagggggcaggcaggagcagcgtctttgaactgcaagttgctgacacaaccgac
ggggagaagcagccgcagctcatcattaaaggggcactggacagagagcagagggactct
tatgagctcaccctgcgtgttagggacgggggcgaccccccacgctcctcccaggccatt
ctgagggtgatgatcactgatgtgaatgacaacagcccgcgctttgagaaggctgtgtat
gaagctgacctgccagagaacagctcccctggtgcccccatcctgcagctgaaagcagct
gacgcagacgttggggtgaacggtcagattgagtacgtatttggtgcggccacagagtca
gtgcgtaggctattgaggctggacgagagctctgggtggctgagcgtgctccatcgtatt
gaccgcgaggaggtgagccagctgcgcttcactgtgatggcgagggaccgaggccagccg
cccaaaatggacaaggccaccgtggtcctcaacatcaaggatgagaatgacaacgtgcca
gccatcgagatccgtaagattggacgcatcttcctaaaggatggagtggccaatgtggca
gaggatgtagtggtggatacacctatagccttagtccaggtgtcggaccgcgaccagggt
gagaacggcatcgtgacctgtactgtggtgggtgacgtgcccttccagctcaaaccggcc
agcgagattgagggtgagatgaataagaagaaatacttcctccatacatcagctccgctg
gactacgaggccacacaggagtacaatgtggtcattgttgcggtggactcaggaagccct
agcctggccagtaataactcgctcatcgtaaaggtgggcgacttcaatgacaacccaccc
atctttagccagaacgtggtcgaggtgtcctttccagaaaacaacgcccccggcgagagg
gtgaccactgtgcaggccatcgatgctgatagtggcaagaacgcggaaatcgcctactcc
ctcgattcctctgtgaatgggatattctccattgatgccgacaatggtgacatcagagta
aacaccattctggacagagagcaaacagagaggtaccagttcaaagtgatagccaaagat
aagggcatgcccatactccaggggtcagccactgtggtggtcctagtggcagataagaat
gacaacgagcctaagttcatgcaggacgttttcaccttctacgtcaaagagaaccttaca
cccaacagccctgttggcatggtgaccgtcattgacgccgacaaaggccagaatgcagaa
atgagcctcttcgtcgaggaagaggaggagatcttctccattgagaacgacacaggaacc
attttctccactatgtcgtttgaccgtgagcagaagaccacctacacattccgggtcaag
gctgtagacagtggagacccacccagatcggccaccgccaccgtgtcactctttgtgatg
gacttgaatgacaatccgccgtccgtcaccttccccatcaacagctcatacaccctcctg
cccccctccagcaacatcaggactgtagtacgaaccgtcatggccaccgataccgacaca
gggatcaacgctgacctaaactacagcatcatcgggggcaaccccttcaaactgtttgag
atcgacgggggcagcggggtcatctcgctggtggggaagatggagaagaaacactatggc
ctccacagactggtggtccaggtgaacgacagcggccagccctcccagagcaccaccacc
ctggtgcatgtatatgtcaacgagaccctctccaactccaccatcgttgaggcccaggtg
gctaagagcctgggcactccgctcaacaccaacgtcgccggcgaccccaactacgacctg
ggcaagcagcggctgagcatcgtcatcggggtggtgtcgggcatcatgacggtcatcctc
atcatcctcatcgtggtcatggcccgctactgccgccccaagaacaagaacggttacgag
gcgggcaagaaggaccacgaggacttcttcacccctcagcagcatgacaagggcaagaag
cccaagaagaacaagaagaacaaacagccgctgtacagcagtatcgtcaccgtcgaggcc
tccaagcccaacggccagcgctacgacggcgtcaacgagaagctgtccgacagctccggg
atgggccggtaccgctccgttaacggagggcccgggagcccggatttggccaggcactac
aagtccagctcgccactgcccacggtccagctccacccccagtcgcccacggccgggaaa
aagcatcaggctgttcaggacctgccccctgcaaacaccttcgttggcaccggagataac
atttcccttggatctgaccactgctctgattacagcagtcaaaccatcagcaagtacaac
aaacagccgttccgccgagtgaccttctcggtggtgagccaaccccaggacccccaccag
cagggatcgctgcagagctgctacgacagtgggctggaggagtcggagacgcccagcagc
aagagctcttcggggggccccaggctgggtgcattgcccctgcccgaggacagctacgag
aggaccacaccggatggcagtgtcggtgaggcagagcatatggaaaatgacacccggacc
ttgcccgacgtagccatgacaggcaagtgcacccgggaatgcgacgaatacggccactcg
gactcctgctggatgcctgtgcgcacgtcgcccgagcggcggcccaagacgaccaccacc
caacaaccaaagctttccaccttcatgaccggcggcggtagcggcagcattcctcccgat
cagcaacaacagcagcagcatcctggcagtcaggaagccctggtcgccatggccaacgga
gacccctcctcccacgtgatgctgggcaacgaccgcaaccgcaacctgctcaacaagaag
atggcctcctcctcgtcctcctacgaagccttcgggtcgcccagcttcagcccgccgggg
gtcgaggagggggtggtggtgggtcaccccatcgaggagatccccctggcccccaccggg
gaatacaagccctcatcctgtggcacgctcacccgccgggaggtctacctgtga
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