Coregonus clupeaformis (lake whitefish): 121571111
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Entry
121571111 CDS
T08357
Name
(RefSeq) splicing factor 1 isoform X1
KO
K13095
splicing factor 1
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121571111
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cclu03041
]
121571111
Spliceosome [BR:
cclu03041
]
Complex A
Other components
Complex A specific factors
121571111
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Ortholog
Paralog
GFIT
Motif
Pfam:
SF1-HH
KH-I_KHDC4-BBP
KH_1
zf-CCHC
KH_12
SLU7_N
zf-CCHC_3
Nlp-28-30
Motif
Other DBs
NCBI-GeneID:
121571111
NCBI-ProteinID:
XP_041738349
LinkDB
All DBs
Position
8:12324600..12338981
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AA seq
687 aa
AA seq
DB search
MATGANATPLGKLHPSIGAKRGFDSGPGAGFMPPPGPPVSFPSLPNFQPPIPNVSFPQAH
PVFTAVAAFPTPPQPPQGAGMQSQSDFGQKKARKRSRWSSETPDQKTVIPGMPTVIPPGL
TRDQEKAYIVQLQIEDLTRKLRTGDLGIPVNPEDRSPSPEPVYNSEGKRLNTREYRTRKK
IEEERHSLITDMVALNPEFKPPADYKPPATRVNDKVMIPQDEYPEINFVGLLIGPRGNTL
KNIEKECCAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANTMENVKKAVEQIRT
ILKQGIETPEDQNDLRKMQLRELARLNGTLREDDNRILRPWQSTEPRSVTNTTLCTKCGG
AGHISSDCKFTSSFAAPRAGEPPQSAQDKARMDKEYLSLMAELGEAPVPTSGGGHSNNQN
SGNNRGNNNNNQPPPSRPPWMNSGQSENRNFHSMHGGHGGHGGHGNQHGGHGNHGGHGGH
GGHHNFPPPMSNMGGHPMPPNNGMPPPWMQPPPPPMGQGHGHHMGLLPPPMMPPPPPPPN
NQPPPPPSGPLPPWQQQAPPPPPTSSMASSAPLPWQQNTTTTSSPGTGNLPPWQQPQQSA
ASAAQPPPPMGNPSMVPPPPGVQPPLPPGAPPPPPPPPPGSAGMMYAPPPPPPPMDPSNF
VTMMGMGVPGMPPFGMPPAPPPPPPQN
NT seq
2064 nt
NT seq
+upstream
nt +downstream
nt
atggctacgggagcaaatgcaacccctctagggaagctgcacccgagtattggcgctaaa
cgaggctttgattccgggcctggtgcggggtttatgcctccacccgggcctcctgtgtcc
tttccttcgctaccgaatttccagccaccaattccaaacgtctctttcccgcaagctcac
ccggtgtttactgcggtggctgcttttcccaccccgccacaaccaccccaaggagccgga
atgcagtctcagtcagacttcggtcagaaaaaagccaggaaaaggagccgctggagtagt
gaaacacccgaccagaagacagtcattcctggtatgcccaccgtcatcccgcctggactg
actcgggatcaggagaaggcctatatagtccaactgcagattgaagacctgactcgtaaa
ctgcgtacaggagacctgggaatccctgttaaccctgaggacaggtccccgtctccagag
cccgtctacaacagcgaggggaagaggctgaacaccagggagtaccgcacacgcaagaag
atcgaggaggagcgtcactccctcatcaccgatatggtggcactcaaccctgagttcaag
ccccccgctgactacaagcccccagccaccagggtcaacgacaaggtgatgattccacag
gacgagtacccagagatcaactttgttggcctgctgattgggccacgtggcaacaccctg
aagaacatagagaaggagtgctgtgccaagatcatgatccgtggcaagggctctgtgaag
gagggcaaggtgggccgtaaggacggccagatgctgccaggggaggacgagccgctgcac
gccctggtcaccgccaacaccatggagaacgtcaagaaggccgtggaacagatccgcacc
atcctcaagcagggcatcgagacccccgaggaccagaacgacctgaggaagatgcagctg
agggagctggccagactcaacgggaccctgagagaggacgacaacaggattctgcgtccg
tggcagagcactgaaccccgcagcgtcaccaacacaaccctctgtacaaagtgtggcggc
gcaggccacatctcctccgactgcaagttcaccagctcctttgcggcgcccagggccggt
gagcccccccagtctgcccaggacaaggcccgtatggacaaggagtacctgtccctcatg
gcggagctgggcgaggcccctgtgcccacctctggcgggggacactccaacaaccagaac
agtggcaacaacagaggcaacaacaacaacaaccagccgccaccgagccgtcctccctgg
atgaactctggccagtctgagaacaggaacttccacagcatgcacggaggccacggcgga
cacggtggtcatgggaaccaacacggtggtcatggcaaccatggaggtcatggaggtcat
ggaggccaccacaacttcccaccccccatgtccaacatgggagggcaccccatgcccccc
aacaatggcatgccacccccgtggatgcagcccccaccgccccccatgggccagggacac
ggacaccatatgggtctgttgcctccacccatgatgccgccaccacctccacccccgaac
aaccagcctcccccaccaccgtcaggtcccctgcctccatggcaacagcaggcccctcca
ccccctcctaccagcagcatggcctctagtgcaccactgccatggcaacagaataccacc
acgacgtccagtcctggcactggtaacctgcccccctggcagcagccccaacagtccgct
gcctcggccgcccagccccctccccccatgggcaacccctcaatggtcccccctccgccc
ggggtccagccacctctcccccccggcgccccacctccccctcctcccccaccccccggc
tcagccggcatgatgtacgcccctccacccccccctccgcccatggatccctccaacttt
gtcaccatgatggggatgggggtgccaggcatgccccccttcggtatgccccctgcgccg
ccacctccacccccccaaaattaa
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