Coregonus clupeaformis (lake whitefish): 121571159
Help
Entry
121571159 CDS
T08357
Name
(RefSeq) DENN domain-containing protein 4C isoform X1
KO
K20163
DENN domain-containing protein 4
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cclu04131
]
121571159
Membrane trafficking [BR:
cclu04131
]
Protein recycling
Rab GTPases and associated proteins
Other Rab GTPase associated proteins
121571159
BRITE hierarchy
Motif
Pfam:
DENN
uDENN
dDENN
PPR_2
DUF2464
PPR_3
PPR_long
PPR
Motif
Other DBs
NCBI-GeneID:
121571159
NCBI-ProteinID:
XP_041738424
LinkDB
All DBs
Position
8:12843060..12903980
Genome browser
AA seq
1949 aa
AA seq
DB search
MIVDKGHRVTDYFVVAGLTDKSTPLEQDLSETKSSGPKAPITDLAVINKSAGETVPEGFT
CIESTYSAQQANLNHGSLKSPEIFLCYKRGRDKPPLTDIGVLYEGKERLIQDCEVIQATP
YGRCANVNNSSAASQRIFITLRRAPPVQPQNSLSVTDICVIVTSKGETPPHTFCKVDKNL
NCGMWGSSVFLCYKKSVSVSNSINYKAGLIFRYPEDDYESFPLSESVPLFCLPMGAKIEC
WAPNTRYPLPVFSTFVLTNSSGEKVYGAAIQFYEAYPIDLLSEKQKVQLGLLTTVEKKMI
PNRTVNTNKCICLLSRWPFFESFRKFLMFLYKLSVSGPHPLPIEKHISHFMHNVSFPSPQ
RPRILVQLSAHDTLMLAQPVCTPMPLSGADYSTLLINLGPENCATLLHFVLLESKILLHS
LRPAVLTGVAEAVVAMIFPFQWQCPYIPLCPLSLAGVLNAPCPFIVGVDSRYFDLYDPPP
DVVCVDLDTNTIYLSEEKKHSNWKNLPKKPCKSLFNSLNNLHHQLGIVRRTAQEGLAVEM
TPIEADFTWHKKMTSLEMEIQESLLRFMANILKGYRSYLKPITQAPSEKATSADSLYDLQ
GFLKSRERAHQKFYSQLTKTQIFIRFIEECTFVSDKDTGLAFFDDCIEKLFPSDKGSDKA
TKVEGESSEDIKLMELDESQKSEHTVFVMPPEPPATEDESDLPARYSYKSFPRLRMDLFD
RPREVMPALRSSTPGASLSSSPALLAKRTKQEIKLAYKMAKRFYSNPPLWAKCLFSHCYS
LWFICLPVGVRLVQSKSWAMQQAYNVLLKMRTSEVEVLDEVCYRVVMQLCGVYGQPVMAV
RVLVEMKKAGVHPNAITYGYYNKAVLEGPWPSRNRSGLFMWAKVRNVVRTVAQFKQALHQ
TPATKGPTITTVVSVSGLVSGDRLSHGSADPSSEVNGDDHILFARSLIIGDATDNHYSTG
GQSDQGYGSKDELHQELVDLAQSAAPLIDVDHCSKPKAQHNAGSVDSVVVVAEPPSPVEA
LPHVPSIVKLSTGGSFDTAMKRGDTAPGKLFSLHSQSEDVSLPEESESAAPGGSGEVGSA
VQGQGQRQKAFSERSCSFSAESRAGMLMEKHGVDHIARHMGADARILAAALSGCGTTPPP
TNPPSKAFFKELESEEGRGPMLRKLSEEGPVMDPTPLEEGLGKEEKRMDGEEASGEGEMG
LKLEEEEEEEGDSGGRGASSLPTLEMKEVEMGADPLSLLVSEHEELASVTSQELPHSLPT
MVSRNLADEIEMYMSLRSPLGPKSSSMELQQGFQGGDSSPDTSPVKQPIERRSSLPVPPV
KHPGGSSGDSTPKRSPAAVTRSKTFAVKATRSPASSSGVVASPRSSLTALVRSSQSGSLG
SVINSISGMKMDALLSGPKMDVLKSGMKQAGNLASKVWGAVASAYSYSDDEDELAPGYRD
RDSFPAGLDESMLSGGGGGDSPTHRGPTQGLVSNGLTQSSTSLASSSSSSDTGRRPHSTQ
VAPGRPGRGPDSDQGSHHASSSSIYQNCAIEVLMSSCSQCRSCECLVYDEEIMAGWTADD
SNLNTTCPFCRTSFLPLLHVEFHDLRTNAGFYLKPSASGDSIHSDQPTTTGSTEHKVGGA
ADTPRPDLISFPESSSEDPGEAPASQTATHKSLVPEPAQSDPLGLLEQRGTSLTRSNSVG
GPLQSLVSVQRQPEHSVSTTSLPCSLTEVDGLGQKRPNPMPVSVPYLSPLVLRKELETLL
ENEGDQVIYTHTFLSQHPIIFWNLVFYFCRLDLPSYLPGLILTSEHCNNGVQLPQTSLSQ
DSKQVYVQLLWDNINLHQEPGDPLYQSWRTLLEKKGTLAPTDHQETRTLLNSIVRSIQTN
DVYGPINLLLREVKRHPEVKRQRGIYREILFLALVALGRENIDVEAFDREYCQAFDKLSP
EQLKALHKIDRPPNSNVQWCLKCFGAPVI
NT seq
5850 nt
NT seq
+upstream
nt +downstream
nt
atgattgtggacaagggtcaccgtgtgaccgactactttgtggtggccgggctgacggac
aagtccacgccactggagcaggacctgtcggagaccaagtccagcgggcccaaggcgccc
atcactgacctggccgtcatcaacaagtcggcgggcgagacggtgccggagggcttcacc
tgcatcgagagcacctacagtgcgcagcaggccaacctcaaccacggcagccttaagagc
cccgagatatttctctgctacaagaggggccgcgacaagcccccactcactgacatcggg
gtattatatgaaggtaaggagcgtctcatccaggactgtgaggtgatccaggccacaccg
tatggccgctgtgccaacgtcaacaacagctctgccgcttcgcagcgcatcttcatcacc
ttacgccgcgcgccgcccgtccagccccagaactccctgtccgtcaccgacatctgcgtc
attgtcaccagtaagggcgagacgccgccgcacaccttctgcaaggtggacaagaacctc
aactgtggcatgtggggctctagtgttttcctgtgctacaagaaatcagtgtcggtgtcc
aactccattaattacaaagccggcctcatcttccgctacccagaggatgactatgagtcc
ttccccttgtctgagtctgtgcccctgttctgcctccccatgggggctaagatcgaatgc
tgggcccccaacacacgctaccctctgcccgtcttctccacctttgtgttaaccaactcc
tctggggaaaaggtgtacggcgcagccatccagttctacgaggcctaccccatagatctc
ctcagtgagaagcagaaggtgcagctgggcctgctcaccaccgtggagaagaagatgatc
cccaaccggacggtcaacaccaacaagtgcatctgcctcctttcccgctggcccttcttc
gagtccttccgcaagttcctcatgttcctctacaagctgtccgtctcgggcccccacccg
ctgcccattgaaaagcacatctcacacttcatgcacaacgtgtccttcccctcacctcag
aggcccagaatcttggtccagctctctgcacacgacaccttgatgctcgcacagcctgtg
tgtactcctatgcctctcagtggtgcagactacagtacactgctgattaacctgggccca
gagaactgtgccacgctgctgcactttgtcctgctggagagtaagatcctgctacactcc
ttgagacccgctgtactcaccggggtagcagaggctgtggtggcgatgatatttccattc
cagtggcagtgcccgtacatccccctctgcccgctctccctggcaggggtcctcaacgcc
ccctgtcccttcatcgtgggcgtggactcccgctactttgacctctatgaccctccgccg
gacgtggtctgtgtggacctggacaccaacactatctacctgtctgaggagaagaaacac
agtaactggaagaacctcccaaagaagccctgcaagagcctgtttaactccctgaacaac
ctgcaccaccagctgggcatcgtgcgtcggacggcccaggagggcttggcggtggagatg
acccccatcgaggcggacttcacctggcacaagaagatgacctccctagagatggagatc
caagagtccctgctgcgcttcatggccaacatcctgaagggctaccgctcctacctcaaa
cccatcacccaggccccctccgagaaggccacctctgcagactcactatatgacctacag
gggttcctaaagagcagggagcgagcccaccagaagttctactcgcagctgacgaagact
cagatcttcattcgcttcatcgaggagtgcacattcgtcagcgacaaggacacaggcctt
gccttcttcgacgactgcatcgagaagctatttccctctgataaaggcagtgacaaagcc
actaaggtggagggtgagtcatcagaggacattaagctcatggaactagacgaatcacag
aagagtgagcacacagtcttcgtcatgcccccagaacctcccgccaccgaggacgaatct
gacctccctgcccgctacagttataagagttttcctcggttgcgtatggacctgtttgac
cgtcccagagaggtgatgccagcgctgaggagcagcacaccaggggccagcctgtccagc
agccctgcactgctggccaagaggaccaagcaggagatcaagcttgcctacaagatggcc
aagcgcttctactccaaccctccgctgtgggccaagtgtctgttcagccactgctacagc
ctgtggttcatctgtctgcccgtgggggtgaggttggtccagtccaagagctgggccatg
cagcaggcctacaacgtcctgctcaagatgaggacctctgaggtggaggtcctggatgag
gtgtgttaccgtgtagtgatgcagctgtgtggtgtgtacggtcagcctgtcatggccgtc
cgtgttctggtggagatgaagaaggcgggggtgcaccctaacgctatcacctatggatac
tacaacaaggctgttctggaaggcccctggccaagtcggaaccgcagcggtctcttcatg
tgggccaaggttcgcaacgtagtgcgcaccgtggcccaattcaaacaggcactccaccag
acgcctgccacgaaaggacccaccatcacgacagtggtgtcggtgagcggcttggtgagc
ggcgaccggctgagccacgggagtgcagacccctccagtgaggtgaatggagatgatcac
atactgttcgcacgcagcctcatcataggagacgccacggacaaccactacagcacagga
ggtcagtctgaccagggctacggctctaaagatgagttgcatcaggagctagtggatttg
gctcaatcagcagcccctctcatcgatgtggatcactgcagcaagcccaaagcacagcac
aacgctggctcggtggacagtgtagtggttgtagcggagccccccagccctgttgaagcc
ctcccacatgtccccagcattgtcaagctgtccacaggagggagcttcgataccgccatg
aagagaggggacaccgccccaggaaagctgttctctctgcacagccagagcgaggacgtc
tctctgccggaggagagtgagtctgcagccccgggtggctccggggaggtggggtctgcg
gtccaggggcagggccagcgccagaaggccttctcggagcgcagctgcagcttcagcgcc
gagagtcgtgccggcatgctgatggagaaacatggcgtggaccacatcgcgagacacatg
ggtgccgatgcccgaatcctcgccgctgccctttctgggtgtggcaccacccccccgcct
acaaatccgccatccaaggccttttttaaggagttggagtctgaggaggggcgtggtccg
atgctgaggaaactgtcagaggaggggcctgtaatggacccaaccccactggaggagggg
ctagggaaagaggagaagagaatggatggggaggaggcttcaggggagggtgagatggga
ctgaagttggaggaggaggaagaagaggaaggagattcaggggggaggggtgctagctct
ctgccaaccctggagatgaaggaggtggagatgggggctgatcccctctccctgctggtc
tcagagcacgaagagttggcctccgtaaccagccaggagctgccgcactctctgcccacc
atggtgtcccgaaacctggcagacgagattgagatgtacatgagcctgcgaagcccactg
ggccccaagtcctccagcatggagctccaacaggggttccagggaggggactcttccccg
gacacttccccagttaagcaacctatagaacggaggtccagcctccctgtgccccccgtc
aaacatccaggggggtcaagcggggactcaacgcccaaacgcagccctgctgccgtcact
cgctccaagacctttgccgttaaggccaccaggagccccgcctcttccagcggcgttgta
gccagcccgaggtcgtcgctgacggcgctggtgaggtcatcgcagagcggctcgctgggc
tcggtcatcaactccatctcaggcatgaagatggatgccctgctctctggtcccaagatg
gacgtgttaaagtcgggcatgaagcaggccgggaacctggccagcaaggtgtggggggcc
gtggcctccgcctactcctactccgacgacgaggatgagcttgccccgggctacagggat
agggatagtttccctgccgggctggatgagtccatgctgtcagggggtggaggaggagac
agtcccacccacagagggccaacccaaggcctggtgtccaacggactgacacagagcagc
accagcctggccagcagcagtagcagcagtgacacagggagaagacctcactccacacaa
gtggctccaggaaggccagggagaggtccagactctgatcaaggctcccaccacgccagc
tcctctagtatctaccagaactgtgccatagaggtgctgatgtccagttgctctcagtgt
cggtcgtgtgagtgtctggtgtacgacgaggagatcatggcgggctggacggcagacgac
tctaacctcaacaccacctgtcccttctgccgcacctccttcctgcccctgctccacgtc
gagttccacgacctgcgcacaaacgcagggttctacctgaagcccagtgcatcaggagac
agtatccacagcgaccaacccacaactacgggctccaccgagcacaaggtggggggtgca
gcagacaccccgcgcccggatctcatcagcttcccagaatcctcctctgaggacccaggg
gaggccccggccagccaaaccgccactcacaagagtttggtaccggaaccggctcagtcg
gaccctctgggcctgctggaacagcgggggacgtctctgacgcgcagtaacagcgtgggc
gggcctctacagagcctggtctctgtccagagacaacccgaacacagcgtgtccaccacc
agcctgccctgcagcctgacagaggtggatggcctgggacagaagcgtcccaaccccatg
ccagtgtctgtgccctacctcagtcccctggtcctccgcaaagaactggagaccctactg
gagaacgagggagaccaggtgatctacacccatacgttcctgagtcagcaccccatcatc
ttctggaacctggtgttttatttctgtcgcctggaccttcccagctacttgcctggcctc
atcctcacctcagaacactgcaacaatggcgtacagctcccacagacctccctgtcccag
gacagtaaacaggtgtatgtgcagctgctgtgggacaacatcaacctgcaccaggagcct
ggcgatcccctctaccagagctggaggaccctgctggagaagaagggtaccctggccccc
acggaccaccaggagacacggaccctcctcaacagcatcgtccgcagcatccagaccaac
gacgtatacggccccatcaacctgctcctccgagaggtcaagaggcacccagaggtcaaa
cgccaaaggggtatctatagggagatcctcttcctggcgcttgtggcattgggaagggag
aacattgacgtcgaggcctttgaccgtgaatactgccaggcctttgataaactgagccca
gagcagcttaaggccctgcacaagatcgaccggccacccaacagcaacgtccagtggtgc
ctcaagtgcttcggagctccagtcatctaa
DBGET
integrated database retrieval system
