Coregonus clupeaformis (lake whitefish): 121571274
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Entry
121571274 CDS
T08357
Symbol
col4a5
Name
(RefSeq) collagen alpha-5(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04510
Focal adhesion
cclu04512
ECM-receptor interaction
cclu04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
121571274 (col4a5)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
121571274 (col4a5)
09142 Cell motility
04820 Cytoskeleton in muscle cells
121571274 (col4a5)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
cclu04147
]
121571274 (col4a5)
00536 Glycosaminoglycan binding proteins [BR:
cclu00536
]
121571274 (col4a5)
Exosome [BR:
cclu04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
121571274 (col4a5)
Glycosaminoglycan binding proteins [BR:
cclu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
121571274 (col4a5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
121571274
NCBI-ProteinID:
XP_041738577
LinkDB
All DBs
Position
8:complement(23409082..23502646)
Genome browser
AA seq
1690 aa
AA seq
DB search
MNKNLKSLRNLAVGLVLVTLCIAVQESESAACHGCAAGSKCDCSGVKGGKGERGFPGLQG
QPGVPGFPGPEGPIGGRGEKGSDGPSGPSGPKGIRGPPGLPGFPGTPGIPGLPGQDGPPG
PRGTAGCNGTKGERGFPGSPGFPGLEGRSGPPGFPGQKGDPGDVISSDRFGQTGGVGLPG
VPGVPGNPGPAGLSGPVGPPGPRGYEGRSGPPGPPGPKGNMGLNFQGPKGDKGDPGLRGP
PGPPGQVGEQKRPSELEIQRGEKGDQGLPGPAGDLGYPGPPGVSGGSKGAKGEPGEAGKR
GKPGKDGDPGPAGFPGSKGEQGGPGLPGRDGDMGDKGDRGYPGPPGVVINGQTGARVGPK
GEPGFPGSSGRKGDRGQPGLSGPPGQPGTPGTGGVGQPGSPGFPGERGQKGDEGQPGISL
PGPPGRSGAPGLQGPPGLPGVAGDSTGGGNCLGGAPGLPGQQGDRGFQGETGQKGDKGET
CVNCFSRGNTVPGAPGPPGPPGPPGFPGGPGVPGAKGDRGYPGGPGLSGSSGPPGSKGEP
GFPGEKGDPGETIAGDGVRGDKGDTGFPGPPGLPGLDGGPGRNGVPGPPGAKGTSGSVLV
KGERGPPGEPGLQGLPGDRGATGSSGYGPQGPPGEKGFQGVSGRTGTPGTPGTKGEPGQT
IAEKGHPGPRGQDGDPGLPGNSGNPGVPGQPGFPGLPGAKGDPGLSSIGMPGPPGAKGFP
GSPGVPGGPGGPGRPGMDGQPGEPGAPGAKGEPGFGLPGPQGPTGVNGPKGLPGPKGDSG
FPGNPGSPGRSGFDGIPGAKGDTGISGIPGARGPPGPTSNGSQGSPGPIGPPGPMGSPGY
SGANGEKGDTGPRGLGIPGLPGDRGSPGFPGNPGGVGPQGNPGSPGRDGLPGLPGGKGDM
GVMGAPGPLGSAGNPGAPGFPGPKGDNGFPGRPGGPGGSGAKGDRGEPGVPGPPGPIIQA
PKGDKGEPGAPGLGGLSGQKGIPGLPGDAGIPGQDGRPGLPGPQGPKGDAGIPGGSGSPG
APGAKGNMGEMGFPGPTGAKGTPGQPGRSGAPGSSGASGFPGAKGEPGSPGTGSPGATGP
KGEPGQSGFPGQNGVKGTPGTSGLPGFPGGPGAKGDPGLPGFQGSPGIPGPKGLDGIPGN
PGLSGPPGRPGENGRAGSPGFPGDKGQAGRDGIPGPAGVKGDPGLPGFGGPGAPGLPGLP
GAKGDLGAPGSSGSPGFPGQKGEVGFPGLPGSPGSVGPPGSPGVALQGPKGNAGPPGPPG
RGGPEGPPGPPGSEGPRGPVGSGGTKGEKGISGIPGSPGSPGAKGEFGSPGFPGTPGLPG
ANGLKGDIGLPGVPGFPGPKGDSGIPGSYGLPGDPGEVGPVGIKGDPGFAPNPIVVKGER
GPPGPSGLPGGHGPAGPPGLEGLSGQPGPPGDPGPEGPPGFSGASGRKGDSGPAGQPGER
GYPGPPGSDGLQGPPGPSGSASVAHGFLITRHSQGEDVPFCPDGTSLIYDGYSLLYVQGN
ERAHGQDLGTAGSCLRRFSTMPFMFCNINNVCNFASRNDYSYWLSTPTPMPMTMAPVTGE
GIKPYISRCAVCEAPAMVIAVHSQTIQIPTCPNYWEPLWIGYSFMMHTSAGAEGSGQALA
SPGSCLEEFRSAPFIECHGRGTCNYYGNSYSFWLATVDQSEMFRKPQSETLKAGNLRTRV
SRCVVCMKRT
NT seq
5073 nt
NT seq
+upstream
nt +downstream
nt
atgaataaaaacttgaagagtctgcgaaatctcgcggtggggttggtgctcgtaaccctg
tgtatcgcggtccaggagtcggaatcagcggcgtgtcatggttgtgcagcgggatcaaag
tgtgactgcagcggagtgaaaggaggcaagggcgagaggggtttcccaggactacagggt
cagccaggcgtaccagggttccccggacctgaggggccaatcggaggcaggggagagaag
ggtagtgacggaccttcagggccatccggtccaaaaggaattaggggacctcctggactg
cccggattcccaggaacaccaggaattccaggtctcccaggacaggacgggcccccgggc
ccaagaggaactgcaggctgcaacgggactaagggtgagagaggcttccctggaagtcca
ggcttccctggactggagggccgatcgggtccacctggttttccaggacaaaagggagat
ccaggtgatgtcatctcaagtgaccgctttggacagacaggaggtgtaggtctacctggt
gtgcctggagttcctggtaacccaggccctgcaggattgtcaggtcctgtcggtccacct
ggacccagaggttatgagggtcgtagcgggcctcctggtcctcctggtcctaagggtaac
atggggttgaacttccaaggtccaaaaggagataagggtgatccaggtctgcgggggcct
cccggtccaccaggacaggtcggggagcagaagagaccctcagagttagaaatccagaga
ggagagaagggtgatcaaggtttacctggtccagctggtgatcttggttatcctggaccc
cctggtgtatctggaggttcgaagggagcgaaaggagagcctggagaagcaggcaaacgg
ggcaaaccagggaaagatggcgacccaggtcctgctggattccctggtagtaaaggagaa
caaggcggtccaggtctgccaggtcgggatggtgacatgggggacaaaggtgaccgtgga
taccctggacctccaggcgtggtgattaatggtcagacaggggcacgtgtggggccgaaa
ggagagcctggtttcccggggtcatcaggaaggaaaggagacagaggacaacctggtctc
tcgggtcctccaggccaaccaggaaccccaggtaccggaggtgtaggccaacccggttcc
ccaggcttcccaggagagaggggccagaagggagacgagggccagccaggcatctccctc
cctgggcccccaggacgaagtggggcccctgggcttcagggaccaccaggccttcccggg
gtggcaggggactccacagggggtggtaactgtttaggaggggcccccgggttaccagga
caacaaggagacagagggtttcaaggagagaccggacagaaaggtgacaagggagaaacc
tgcgtgaactgtttctcccgtgggaacaccgtccctggagcaccaggccctcccggacct
cccggacctcccgggttcccaggtggaccaggagtaccaggggctaaaggtgatagagga
tatccaggtggcccagggctgtcaggttcttctggtccgcctggttccaagggtgagcct
ggtttcccaggagagaagggtgacccaggtgagactatcgctggggacggggtcaggggc
gacaagggagacacagggttccccggaccccctggcctgcctggcctggatggaggacct
ggtcgcaatggagttcctggacctcctggagccaaaggaacatctggttctgtgttagtg
aagggtgagcgagggcctccaggtgagcccggtctgcagggtctcccaggtgacaggggt
gccaccggatcctcaggctacggcccccaagggccccctggagagaagggttttcagggc
gtctcagggagaacaggaacacctggaacaccaggcactaaaggtgagccgggtcagacg
atagcagagaagggacacccaggacccagaggacaggatggagaccccggtcttcctgga
aactcaggcaaccccggcgtgccaggacagcccggtttccccggcttaccaggcgccaag
ggcgaccccggcctctccagcattggaatgccaggaccccccggcgctaaaggattccca
ggctcacctggtgtgccaggtggtcccggaggtccaggaagaccaggaatggacggccaa
cccggtgagccaggtgcacctggagctaagggagagccagggttcgggctgccaggtccc
cagggccctacaggcgtcaatggacccaaaggattacctggacccaaaggagactctggt
ttccccggcaaccccggctcacctggacgatccggcttcgacggtatccctggagccaaa
ggtgacactggtatctctgggatacccggagcccgtggccctccaggaccaacctccaac
ggctctcagggcagccccggccccatcggacccccaggacccatgggctctccaggatac
tcaggcgccaacggagagaagggagacaccggtcctcgaggcctgggcattccagggttg
ccaggcgacagaggaagtcccggtttccccggcaaccccgggggagttggaccacagggt
aaccctggcagccccggccgagacggactgcctggcctgcccggtggtaaaggagacatg
ggtgtgatgggagctcctggacctctgggatccgctgggaaccccggagctcccggcttc
cctggacctaaaggtgacaatggtttcccagggcgaccaggtgggcccggtggttcaggt
gcgaagggagacaggggagagcccggtgtgccgggacccccaggacccatcatccaggca
ccgaagggtgacaagggagaaccaggagcaccaggtttgggaggactgtcaggtcaaaag
ggtatccctggtctccctggagacgctggtataccaggacaggacggaagacctgggttg
ccaggacctcaaggacccaaaggagacgcaggtatccctggaggatcaggctcaccagga
gccccaggagctaaaggcaacatgggagagatgggcttcccaggacccacgggggcaaaa
ggaactccgggtcagccaggtcggtcgggtgcacccggtagttcaggagcatcagggttc
cctggagctaagggagagcctggttcccctggcactggttccccaggagctacaggtccc
aagggtgagcccggtcagtcaggattccccggacaaaacggagtgaaaggaactcccgga
acatcaggtcttcctgggttccctggcggccctggcgccaaaggcgaccccggcctccca
ggattccaaggttctcccggtattcccgggcctaagggtcttgatggtatccccggtaac
cccggtctcagcggaccacccggccgaccgggagagaacggccgtgccggatcacctggg
ttcccaggggacaagggtcaggcgggtcgtgatggaatccctggaccagcaggagtcaaa
ggagacccaggtcttcctggtttcggtggccctggcgctcctggtctcccagggttacca
ggtgctaagggagatcttggcgcccctggttcttccggtagccctggcttccctggtcag
aagggagaggtgggtttccctggcctgcctgggtcccctggcagtgttgggccccctggc
agcccaggtgtggccctccaggggcccaaaggtaacgccggcccccccggaccccctgga
agaggaggtcccgaaggtcctccaggtcctcctggctctgagggtccccgtggccctgtt
ggcagcggagggaccaaaggtgagaagggaatttccggaattcctggatcgcctggttcc
cccggagcaaagggagaattcggatcgcccggattcccgggtactcctggccttcctggt
gccaacgggctgaagggagacattggactgcccggcgttcccggattcccaggaccaaag
ggagattctggaatccctggatcatatggtctccctggagaccccggagaggttggccct
gttggaatcaaaggtgacccaggttttgctccaaaccccatcgtggtgaagggagagcgt
ggcccccctggcccttcaggtctgccaggcggccatggccccgcaggaccccccggactg
gagggactctcaggtcagcccggtccgccaggagaccccggtcctgagggacccccagga
ttcagtggagcctccggccgcaagggggactcaggaccggccggacagccaggtgaacgt
ggatatcccggtccccctggttcagatggcctgcagggccccccaggtccatctggatct
gcctctgtggcccacggcttcctgatcaccagacacagccagggcgaggacgtccccttc
tgcccagacggcaccagcctcatctacgacggctactctctgctttacgtacagggcaat
gagagggcacacggacaggatctgggaactgctggtagttgcctgcgtcggttcagcacc
atgccattcatgttctgtaacatcaacaacgtgtgtaacttcgcctcccgtaacgactac
tcctattggctgtccacacccacgcccatgcccatgactatggcccccgtcaccggagaa
ggcatcaaaccttacatcagcaggtgtgcggtgtgtgaggcccctgccatggtgatcgct
gtacacagtcagaccattcagatccccacctgccccaactactgggaaccactgtggatt
ggatactccttcatgatgcacactagtgctggtgctgagggttcgggtcaggctctggcc
tctcccggctcctgtctagaggaattccggagcgctcccttcatcgagtgccacggacgg
ggaacctgcaactactacggcaactcctacagcttctggctggccaccgtcgaccaatca
gaaatgttcaggaagccacagtcggagacgctgaaggcaggtaacctgcggacgcgcgtc
agccgctgtgtggtctgtatgaagaggacgtaa
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