Coregonus clupeaformis (lake whitefish): 121571274
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Entry
121571274 CDS
T08357
Symbol
col4a5
Name
(RefSeq) collagen alpha-5(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04382
Cornified envelope formation
cclu04510
Focal adhesion
cclu04512
ECM-receptor interaction
cclu04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
121571274 (col4a5)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
121571274 (col4a5)
09142 Cell motility
04820 Cytoskeleton in muscle cells
121571274 (col4a5)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
121571274 (col4a5)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
cclu04147
]
121571274 (col4a5)
00536 Glycosaminoglycan binding proteins [BR:
cclu00536
]
121571274 (col4a5)
Exosome [BR:
cclu04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
121571274 (col4a5)
Glycosaminoglycan binding proteins [BR:
cclu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
121571274 (col4a5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
121571274
NCBI-ProteinID:
XP_041738577
LinkDB
All DBs
Position
8:complement(23409082..23502646)
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AA seq
1690 aa
AA seq
DB search
MNKNLKSLRNLAVGLVLVTLCIAVQESESAACHGCAAGSKCDCSGVKGGKGERGFPGLQG
QPGVPGFPGPEGPIGGRGEKGSDGPSGPSGPKGIRGPPGLPGFPGTPGIPGLPGQDGPPG
PRGTAGCNGTKGERGFPGSPGFPGLEGRSGPPGFPGQKGDPGDVISSDRFGQTGGVGLPG
VPGVPGNPGPAGLSGPVGPPGPRGYEGRSGPPGPPGPKGNMGLNFQGPKGDKGDPGLRGP
PGPPGQVGEQKRPSELEIQRGEKGDQGLPGPAGDLGYPGPPGVSGGSKGAKGEPGEAGKR
GKPGKDGDPGPAGFPGSKGEQGGPGLPGRDGDMGDKGDRGYPGPPGVVINGQTGARVGPK
GEPGFPGSSGRKGDRGQPGLSGPPGQPGTPGTGGVGQPGSPGFPGERGQKGDEGQPGISL
PGPPGRSGAPGLQGPPGLPGVAGDSTGGGNCLGGAPGLPGQQGDRGFQGETGQKGDKGET
CVNCFSRGNTVPGAPGPPGPPGPPGFPGGPGVPGAKGDRGYPGGPGLSGSSGPPGSKGEP
GFPGEKGDPGETIAGDGVRGDKGDTGFPGPPGLPGLDGGPGRNGVPGPPGAKGTSGSVLV
KGERGPPGEPGLQGLPGDRGATGSSGYGPQGPPGEKGFQGVSGRTGTPGTPGTKGEPGQT
IAEKGHPGPRGQDGDPGLPGNSGNPGVPGQPGFPGLPGAKGDPGLSSIGMPGPPGAKGFP
GSPGVPGGPGGPGRPGMDGQPGEPGAPGAKGEPGFGLPGPQGPTGVNGPKGLPGPKGDSG
FPGNPGSPGRSGFDGIPGAKGDTGISGIPGARGPPGPTSNGSQGSPGPIGPPGPMGSPGY
SGANGEKGDTGPRGLGIPGLPGDRGSPGFPGNPGGVGPQGNPGSPGRDGLPGLPGGKGDM
GVMGAPGPLGSAGNPGAPGFPGPKGDNGFPGRPGGPGGSGAKGDRGEPGVPGPPGPIIQA
PKGDKGEPGAPGLGGLSGQKGIPGLPGDAGIPGQDGRPGLPGPQGPKGDAGIPGGSGSPG
APGAKGNMGEMGFPGPTGAKGTPGQPGRSGAPGSSGASGFPGAKGEPGSPGTGSPGATGP
KGEPGQSGFPGQNGVKGTPGTSGLPGFPGGPGAKGDPGLPGFQGSPGIPGPKGLDGIPGN
PGLSGPPGRPGENGRAGSPGFPGDKGQAGRDGIPGPAGVKGDPGLPGFGGPGAPGLPGLP
GAKGDLGAPGSSGSPGFPGQKGEVGFPGLPGSPGSVGPPGSPGVALQGPKGNAGPPGPPG
RGGPEGPPGPPGSEGPRGPVGSGGTKGEKGISGIPGSPGSPGAKGEFGSPGFPGTPGLPG
ANGLKGDIGLPGVPGFPGPKGDSGIPGSYGLPGDPGEVGPVGIKGDPGFAPNPIVVKGER
GPPGPSGLPGGHGPAGPPGLEGLSGQPGPPGDPGPEGPPGFSGASGRKGDSGPAGQPGER
GYPGPPGSDGLQGPPGPSGSASVAHGFLITRHSQGEDVPFCPDGTSLIYDGYSLLYVQGN
ERAHGQDLGTAGSCLRRFSTMPFMFCNINNVCNFASRNDYSYWLSTPTPMPMTMAPVTGE
GIKPYISRCAVCEAPAMVIAVHSQTIQIPTCPNYWEPLWIGYSFMMHTSAGAEGSGQALA
SPGSCLEEFRSAPFIECHGRGTCNYYGNSYSFWLATVDQSEMFRKPQSETLKAGNLRTRV
SRCVVCMKRT
NT seq
5073 nt
NT seq
+upstream
nt +downstream
nt
atgaataaaaacttgaagagtctgcgaaatctcgcggtggggttggtgctcgtaaccctg
tgtatcgcggtccaggagtcggaatcagcggcgtgtcatggttgtgcagcgggatcaaag
tgtgactgcagcggagtgaaaggaggcaagggcgagaggggtttcccaggactacagggt
cagccaggcgtaccagggttccccggacctgaggggccaatcggaggcaggggagagaag
ggtagtgacggaccttcagggccatccggtccaaaaggaattaggggacctcctggactg
cccggattcccaggaacaccaggaattccaggtctcccaggacaggacgggcccccgggc
ccaagaggaactgcaggctgcaacgggactaagggtgagagaggcttccctggaagtcca
ggcttccctggactggagggccgatcgggtccacctggttttccaggacaaaagggagat
ccaggtgatgtcatctcaagtgaccgctttggacagacaggaggtgtaggtctacctggt
gtgcctggagttcctggtaacccaggccctgcaggattgtcaggtcctgtcggtccacct
ggacccagaggttatgagggtcgtagcgggcctcctggtcctcctggtcctaagggtaac
atggggttgaacttccaaggtccaaaaggagataagggtgatccaggtctgcgggggcct
cccggtccaccaggacaggtcggggagcagaagagaccctcagagttagaaatccagaga
ggagagaagggtgatcaaggtttacctggtccagctggtgatcttggttatcctggaccc
cctggtgtatctggaggttcgaagggagcgaaaggagagcctggagaagcaggcaaacgg
ggcaaaccagggaaagatggcgacccaggtcctgctggattccctggtagtaaaggagaa
caaggcggtccaggtctgccaggtcgggatggtgacatgggggacaaaggtgaccgtgga
taccctggacctccaggcgtggtgattaatggtcagacaggggcacgtgtggggccgaaa
ggagagcctggtttcccggggtcatcaggaaggaaaggagacagaggacaacctggtctc
tcgggtcctccaggccaaccaggaaccccaggtaccggaggtgtaggccaacccggttcc
ccaggcttcccaggagagaggggccagaagggagacgagggccagccaggcatctccctc
cctgggcccccaggacgaagtggggcccctgggcttcagggaccaccaggccttcccggg
gtggcaggggactccacagggggtggtaactgtttaggaggggcccccgggttaccagga
caacaaggagacagagggtttcaaggagagaccggacagaaaggtgacaagggagaaacc
tgcgtgaactgtttctcccgtgggaacaccgtccctggagcaccaggccctcccggacct
cccggacctcccgggttcccaggtggaccaggagtaccaggggctaaaggtgatagagga
tatccaggtggcccagggctgtcaggttcttctggtccgcctggttccaagggtgagcct
ggtttcccaggagagaagggtgacccaggtgagactatcgctggggacggggtcaggggc
gacaagggagacacagggttccccggaccccctggcctgcctggcctggatggaggacct
ggtcgcaatggagttcctggacctcctggagccaaaggaacatctggttctgtgttagtg
aagggtgagcgagggcctccaggtgagcccggtctgcagggtctcccaggtgacaggggt
gccaccggatcctcaggctacggcccccaagggccccctggagagaagggttttcagggc
gtctcagggagaacaggaacacctggaacaccaggcactaaaggtgagccgggtcagacg
atagcagagaagggacacccaggacccagaggacaggatggagaccccggtcttcctgga
aactcaggcaaccccggcgtgccaggacagcccggtttccccggcttaccaggcgccaag
ggcgaccccggcctctccagcattggaatgccaggaccccccggcgctaaaggattccca
ggctcacctggtgtgccaggtggtcccggaggtccaggaagaccaggaatggacggccaa
cccggtgagccaggtgcacctggagctaagggagagccagggttcgggctgccaggtccc
cagggccctacaggcgtcaatggacccaaaggattacctggacccaaaggagactctggt
ttccccggcaaccccggctcacctggacgatccggcttcgacggtatccctggagccaaa
ggtgacactggtatctctgggatacccggagcccgtggccctccaggaccaacctccaac
ggctctcagggcagccccggccccatcggacccccaggacccatgggctctccaggatac
tcaggcgccaacggagagaagggagacaccggtcctcgaggcctgggcattccagggttg
ccaggcgacagaggaagtcccggtttccccggcaaccccgggggagttggaccacagggt
aaccctggcagccccggccgagacggactgcctggcctgcccggtggtaaaggagacatg
ggtgtgatgggagctcctggacctctgggatccgctgggaaccccggagctcccggcttc
cctggacctaaaggtgacaatggtttcccagggcgaccaggtgggcccggtggttcaggt
gcgaagggagacaggggagagcccggtgtgccgggacccccaggacccatcatccaggca
ccgaagggtgacaagggagaaccaggagcaccaggtttgggaggactgtcaggtcaaaag
ggtatccctggtctccctggagacgctggtataccaggacaggacggaagacctgggttg
ccaggacctcaaggacccaaaggagacgcaggtatccctggaggatcaggctcaccagga
gccccaggagctaaaggcaacatgggagagatgggcttcccaggacccacgggggcaaaa
ggaactccgggtcagccaggtcggtcgggtgcacccggtagttcaggagcatcagggttc
cctggagctaagggagagcctggttcccctggcactggttccccaggagctacaggtccc
aagggtgagcccggtcagtcaggattccccggacaaaacggagtgaaaggaactcccgga
acatcaggtcttcctgggttccctggcggccctggcgccaaaggcgaccccggcctccca
ggattccaaggttctcccggtattcccgggcctaagggtcttgatggtatccccggtaac
cccggtctcagcggaccacccggccgaccgggagagaacggccgtgccggatcacctggg
ttcccaggggacaagggtcaggcgggtcgtgatggaatccctggaccagcaggagtcaaa
ggagacccaggtcttcctggtttcggtggccctggcgctcctggtctcccagggttacca
ggtgctaagggagatcttggcgcccctggttcttccggtagccctggcttccctggtcag
aagggagaggtgggtttccctggcctgcctgggtcccctggcagtgttgggccccctggc
agcccaggtgtggccctccaggggcccaaaggtaacgccggcccccccggaccccctgga
agaggaggtcccgaaggtcctccaggtcctcctggctctgagggtccccgtggccctgtt
ggcagcggagggaccaaaggtgagaagggaatttccggaattcctggatcgcctggttcc
cccggagcaaagggagaattcggatcgcccggattcccgggtactcctggccttcctggt
gccaacgggctgaagggagacattggactgcccggcgttcccggattcccaggaccaaag
ggagattctggaatccctggatcatatggtctccctggagaccccggagaggttggccct
gttggaatcaaaggtgacccaggttttgctccaaaccccatcgtggtgaagggagagcgt
ggcccccctggcccttcaggtctgccaggcggccatggccccgcaggaccccccggactg
gagggactctcaggtcagcccggtccgccaggagaccccggtcctgagggacccccagga
ttcagtggagcctccggccgcaagggggactcaggaccggccggacagccaggtgaacgt
ggatatcccggtccccctggttcagatggcctgcagggccccccaggtccatctggatct
gcctctgtggcccacggcttcctgatcaccagacacagccagggcgaggacgtccccttc
tgcccagacggcaccagcctcatctacgacggctactctctgctttacgtacagggcaat
gagagggcacacggacaggatctgggaactgctggtagttgcctgcgtcggttcagcacc
atgccattcatgttctgtaacatcaacaacgtgtgtaacttcgcctcccgtaacgactac
tcctattggctgtccacacccacgcccatgcccatgactatggcccccgtcaccggagaa
ggcatcaaaccttacatcagcaggtgtgcggtgtgtgaggcccctgccatggtgatcgct
gtacacagtcagaccattcagatccccacctgccccaactactgggaaccactgtggatt
ggatactccttcatgatgcacactagtgctggtgctgagggttcgggtcaggctctggcc
tctcccggctcctgtctagaggaattccggagcgctcccttcatcgagtgccacggacgg
ggaacctgcaactactacggcaactcctacagcttctggctggccaccgtcgaccaatca
gaaatgttcaggaagccacagtcggagacgctgaaggcaggtaacctgcggacgcgcgtc
agccgctgtgtggtctgtatgaagaggacgtaa
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