Coregonus clupeaformis (lake whitefish): 121571384
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Entry
121571384 CDS
T08357
Name
(RefSeq) probable ATP-dependent RNA helicase ddx6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121571384
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cclu03019
]
121571384
03036 Chromosome and associated proteins [BR:
cclu03036
]
121571384
Enzymes [BR:
cclu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
121571384
Messenger RNA biogenesis [BR:
cclu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
121571384
mRNA degradation factors
5'-3' decay
Decapping complex
121571384
Chromosome and associated proteins [BR:
cclu03036
]
Eukaryotic type
Gene silencing
piRNA pathway
121571384
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
121571384
NCBI-ProteinID:
XP_041738733
LinkDB
All DBs
Position
8:complement(29021555..29047066)
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AA seq
490 aa
AA seq
DB search
MASARMENLGPVVMGLNKQNGQLRGAPKPASPQSGPLVLGSLSGKAIGAPQKAGAALEGT
GIRFGDDWKKSLQLPPKDTRVRTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPSPVQE
ESIPIALSGRDILARAKNGTGKSGAYLIPMLERIDLKKDYIQAIVMVPTRELALQVSQIS
IQISKHLGGVKVMATTGGTNLRDDIMRLDETVHVVIATPGRILDLIKKGVAKVDRVQMMV
MDEADKLLSQDFVVLIEDIISYLAKGRQILLYSATFPISVQKFMAKHLQKPYEINLMEEL
TLKGITQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSTQRVELLAKKITQLGYSCFYI
HAKMMQEYRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGR
SGRFGHLGLAINLITSEDRFNLKSIEDQLVTDIKPIPGSIDKSLYVAEFHAANPDCEEEL
KETGRLQGEP
NT seq
1473 nt
NT seq
+upstream
nt +downstream
nt
atggcatccgcaagaatggagaaccttggccctgttgtcatgggactgaacaagcagaac
gggcagcttaggggggcgcctaaaccggcctctccccaatcaggacccctcgtcctgggc
tctctttcaggcaaggccataggtgcaccccagaaagcaggtgctgccctggagggaact
ggcattaggtttggagatgactggaaaaagagcctacagctccctcccaaagacaccagg
gtcagaacctctgatgtaacgtccactaagggaaatgagtttgaggactactgtctgaaa
cgggagctcctgatgggcatctttgagatgggctgggagaagccctcccctgtccaggag
gagagcattcccatagccctgtcaggacgagacatcctggcccgagccaagaatggaaca
gggaagagtggggcctacctcatccctatgctggagagaatagacctgaagaaggactat
atacaggccattgtgatggtgcccactcgtgagctggccctgcaggtgagccagatcagt
atccagatcagcaagcacctgggtggagtgaaagtaatggccaccacgggcggcaccaac
ctgcgagatgacatcatgcgcctggacgagactgtgcatgtggtcatagccacacccggc
aggatcctggacttgataaagaagggcgtggccaaagtggatagagtccagatgatggtg
atggatgaggcagacaagctgctgtctcaggactttgtggtgctcatcgaggatatcatc
agctacctggccaagggccgtcagatcctgctgtactctgccaccttccccatcagcgtg
cagaagttcatggccaagcacctgcagaagccctatgaaatcaacctgatggaggagctg
actctgaagggcatcacccagtactacgcctacgtcactgagagacaaaaagtccactgt
ctcaacacactgttctccaggttgcagatcaatcagtccatcatcttctgtaactccacc
cagagagttgagctgctggccaagaagatcacccagctgggctactcctgcttctacatc
cacgccaagatgatgcaggagtacagaaaccgtgtgttccacgacttcagaaatggactc
tgcagaaatcttgtctgcaccgatctgttcaccagaggtattgacatccaggctgtcaat
gtcgtcatcaacttcgacttccccaagaacgccgagacatacctgcatcgcatcggaaga
tcagggaggtttggacacctgggcttggccatcaacctgatcacctctgaggaccgcttc
aatctgaagtctatcgaggaccagctggtcaccgacatcaagcctatccctggcagcatc
gacaagagcctgtatgtagcagagttccacgccgccaaccccgattgcgaggaggagctg
aaggagacaggccgcctacagggggagccctag
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