Coregonus clupeaformis (lake whitefish): 121571409
Help
Entry
121571409 CDS
T08357
Name
(RefSeq) sorting nexin-27 isoform X1
KO
K17936
sorting nexin-27
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cclu04131
]
121571409
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
cclu04990
]
121571409
Membrane trafficking [BR:
cclu04131
]
Protein recycling
Others
Others
121571409
Domain-containing proteins not elsewhere classified [BR:
cclu04990
]
Phox homology (PX) domain-containing proteins
Sorting nexins
121571409
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PX
PDZ
RA
PDZ_6
SNX17-27-31_F1_FERM
RA_2
PDZ_2
SNX17_FERM_C
USP7_C2
DarA_N
SNX17-31_F2_FERM
Motif
Other DBs
NCBI-GeneID:
121571409
NCBI-ProteinID:
XP_041738772
LinkDB
All DBs
Position
8:complement(27581767..27644007)
Genome browser
AA seq
746 aa
AA seq
DB search
MADVESDEIRSALPSASRNGPAAGSVVGTGVENATQVTSGPRMVRIVKSESGYGFNVRGQ
VSEGGQLRSINGELYAPLQHVSAVLPGGAADRAGISKGDRILEVNGVSVEGATHKQVVDL
IRAGARELLLSVLSVPPQEADGLEAVDESAAQLSYDYSDKQAVPISIPTFKHVEQHAERF
VVYNVYISGRQLCSKRYREFAILNQNLKREFASYTFPKIPGKWPFSLSEQQLDTRRRGLE
EYLERVCSVRVIGESDIMQEFLSESDENYNGVSDVELRIALPDKTTISVRVRKNSTTDQV
YQALVMKVGMDSIMASYFALFEVINHSFVRKLAPNEFPHKLYVQNYTSAVPGTCLALRKW
LFTSQEEELLRDNTLAVHYCFHQALDDVKKGFIKTEDNSYQLTKLAEQRKMAMYLSLLRS
CEGYNEVMFPHCACDSRRKGHVITAISMHHFKLHACTEDGTLENQVIAFEWVEMQRWDTD
EEGMAFCFEYAKGEKKPRWVKIFTPYFNYMHECFERVFCELKWRKQVEEEASDKDNQNCS
NNEVLGGGLHKVGSGHEDGDGADDVEHTEGHQAKPVDDCCRKLPLVSHALRLILLTEAVC
HVTHFLQNSLELGVAYTPCRVLSSAPHSEAPATGNGARAAHGVRIGGGGWRRAAEWRGQI
GRGAACYSRRPGRDAVTLDVIWEQWGFVQVLEADVEQVSIVVGAGLGVKVGVTRVQGASL
ERGQVLGVERVECGVWRVRDATTLGA
NT seq
2241 nt
NT seq
+upstream
nt +downstream
nt
atggcggatgttgaaagcgatgaaattcggtcggctctcccttcggcttcccgcaatgga
cccgctgcaggttcggtagttggtactggagtcgaaaatgctacccaagtgacgtcaggt
ccacggatggttagaattgtaaagtcggaatcaggatatggattcaacgttcgtggacaa
gttagcgaaggaggacaactgcgaagcatcaatggggaattgtacgcacctcttcagcat
gtcagtgctgttttgcctggaggggcagcggaccgagctggcatatcaaagggtgacagg
attctggaggttaatggtgtgagcgtggagggggccacccacaagcaggtggtggatctg
atccgggccggggcgagggagctgttgctttctgtgctgtctgtgccgccccaggaggca
gatggccttgaggccgtggacgagagcgcggcccagctcagctatgactacagcgacaag
caggccgtgcccatctccatccccaccttcaagcacgtggagcagcatgccgagaggttt
gtggtgtacaatgtgtacatttcgggcaggcagctgtgctccaagcgctaccgggagttt
gctatcctgaaccagaacctgaagagggagtttgccagttacaccttccccaagatccca
gggaagtggcccttctccctgtctgagcagcagctggacacacgccgcaggggcctggag
gagtacctggagagagtttgttcagtacgggtgattggggagagtgacatcatgcaggaa
ttcctttctgaatcagatgagaattacaatggagtttcagacgtggagctgcggatagcc
ctgccagacaagaccaccatctctgtcagagtgcgcaagaacagcacgaccgaccaagtc
taccaggctttagtgatgaaagttggtatggacagcatcatggccagctactttgccctc
tttgaagtcatcaaccactcctttgtgcgaaaactggctcccaacgagttcccccacaag
ctgtatgtgcagaactacacgtcggccgtgccgggcacctgcctggccctccgcaagtgg
cttttcacctctcaggaggaggagctgctcagggacaacacgctggccgtccactactgc
ttccaccaggcattggatgacgtgaagaagggattcatcaaaacagaagacaattcttac
cagctgacgaaactggcagagcagcgcaagatggccatgtacctgagtctgcttcgctcc
tgtgagggctacaacgaggtcatgttcccccactgcgcctgtgactcccggaggaagggc
cacgtcatcacggccatcagcatgcaccacttcaaactgcacgcctgcacagaggatggc
acgcttgagaaccaggtgatagcatttgagtgggtggagatgcagcgctgggacactgac
gaggaaggcatggcgttttgctttgagtatgccaagggggagaagaaacctcgctgggtc
aagatcttcacaccatacttcaactacatgcacgagtgtttcgagagggtcttctgtgag
ctcaagtggaggaaacaggttgaagaggaggcctctgacaaagacaaccagaactgcagt
aacaatgaagtccttggaggcggcctccacaaagttgggagcggacatgaggatggcgat
ggtgcagatgatgttgaacacactgaaggccaccaggcaaagccggtcgatgactgctgc
cgcaaacttccactggtcagccacgctctccgtctcatcctgctcacggaagcggtctgc
catgtaacgcacttcctccagaatagcctggagctgggggtcgcctataccccctgccga
gtactgtcctccgccccccattccgaagcccccgccactggaaacggtgctagggcagcc
cacggtgtccgcattgggggtggggggtggcggagggctgcagaatggagggggcagatt
gggaggggggctgcctgctactcgaggaggcccggccgagatgctgtaactctggatgtg
atctgggagcagtgggggttcgtccaggttctggaagccgatgtagagcaggtttccatt
gttgttggcgctggactgggcgtgaaggtgggggtgacccgcgtgcagggggccagcctg
gagaggggccaggttctgggggtggagcgggtggagtgtggggtctggagggttagggat
gctaccactttgggagcttga
DBGET
integrated database retrieval system
