Coregonus clupeaformis (lake whitefish): 121571464 Help Entry 121571464         CDS       T08357                                  Symbol skiv2l Name (RefSeq) helicase SKI2W   KO K12599   antiviral helicase SKI2 [EC:5.6.2.6] Organism cclu  Coregonus clupeaformis (lake whitefish) Pathway cclu03018   RNA degradation Brite KEGG Orthology (KO) [BR:cclu00001]  09120 Genetic Information Processing   09123 Folding, sorting and degradation    03018 RNA degradation     121571464 (skiv2l)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:cclu03019]     121571464 (skiv2l) Enzymes [BR:cclu01000]  5. Isomerases   5.6  Isomerases altering macromolecular conformation    5.6.2  Enzymes altering nucleic acid conformation     5.6.2.6  RNA 3'-5' helicase      121571464 (skiv2l) Messenger RNA biogenesis [BR:cclu03019]  Eukaryotic type   mRNA surveillance and transport factors    Transport factors     eIF4F and regulatory proteins      121571464 (skiv2l)   mRNA degradation factors    3'-5' decay     Ski complex      121571464 (skiv2l) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  DSHCT Ski2_N DEAD MTR4_beta-barrel Helicase_C DEXQc_Suv3 ResIII MTR4-like_stalk HTH_23 DUF3516 Motif Other DBs NCBI-GeneID:  121571464 NCBI-ProteinID:  XP_041738869 LinkDB All DBs Position 8:25091147..25128712 Genome browser AA seq 1250 aa AA seqDB search MERIDLPAVGPTDLPISLLEMGCSGRFELITHPQPNEQPLPPQSSLPHGLPPTSVGLETE VEKRFLRDPAWLPIHDTDAAFHRFLKLAERDVHVDSLLHCAPSTMHSGISVIRDPTTGML LDFTEVLLGDTGISAKNSMSLQRPPNPNPSESLRGSNTNYPFLPGGMEELTLEQIKKKSE LEEDIDFENGLLTVPPGLKVGMDFSDKDAKTTKGEINLLSLLSTFDDIVDSQPEAEEKEK GNGSGNAPKLPRTNSLEDLGIKDSPSTPGITSTEKKDGGTTKPGEGQEEKKRWAIPVDIT SPCGDFYKRIPNPAFKYPFELDVFQKQAVLRLEAHESVFVAAHTSAGKTVVAEYAIALSQ KHMTRTIYTSPIKALSNQKFRDFKTTFGDVGLLTGDVQLSPEASCLIMTTEILRSMLYNG SEVIRDLEWVIFDEVHYINDAERGVVWEEVLIMLPDHVSIILLSATVPNAVEFSEWIGRI KKKHIYVISTAKRPVPLEHYLYTGNSTKTQKEMFLLLDPTGNFQTKGYYAAIDAKKERTS KHAQSFGTKNASQNTTPNQDRAVWLSLLHFLSQRQQTPVVAFTFSRTRCDDNARSLTSMD LTSSVEKSEIHSFFQKSLSRLRGGDRQLPQILLMRDLLKRGIGVHHSGILPILKEVIEML FSRGLVKVLFATETFAMGVNMPARTVVFDSIRKHDGTGFRNLLPGEYIQMAGRAGRRGLD ATGTVIILCKSGVHEMGDLHVMMLGKPTVLQSQFRLTYTMILNLLRVEALRVTDMMRRSF SESHRDTQAHEQQIGQLKQTLSSLPPLDMEGQLSDLLPYYYTVTELRITAEALQCAVLGS VNGLKALSVGRVVVVNNKQHFNALGVLLQVSSDSVNRTFTALIICEKGNEEGRGDSLNAS AFPHLYNTALFIPEGPCSHTVQKLKLQDVSAITVKTLKVIPDRIIDNYNKRQQPRFRLDP PGQAISTATQELLRLAEANPGGLVTLDPVNDFQLKSVDVVEGTIRLRVLQDSLKDFNCIH SPTFSEQFLRVQERLSVQEELDKLLFLISDQSLSLLPEYHHRIKVLQSLQYVDSSGAVQL KGRVACQISSHELLLTELLFENALSTLAPEESAALLSCLVFQQKTQVEPHITNTLQEGIE RVLAVAQRIGELQRDCGITQTVEEFVGQFKFGLTEVVYCWARGMPFAEIAQLTDVQEGTV VRCIQRLDEVLKEVRQAARIVGDSVLGSKMEKASLAIRRDIVFTASLYTH NT seq 3753 nt NT seq  +upstreamnt  +downstreamnt atggaaagaatagatctgcccgctgtgggccccactgacctccctatatcgctgctggag atgggttgctctggcaggtttgagctcatcacacatccacagcccaatgaacagcccctg cctccacaaagctcgctcccccatggactccctcccaccagtgtgggcctggagacagag gtagagaagcgctttctacgcgaccctgcctggcttcccatacacgataccgacgctgcc ttccacaggtttctgaagctggctgagagagatgttcatgtagactctcttctccattgt gctccatctactatgcactctggcatctcagtaatcagagatccaacaacaggaatgttg ttggacttcactgaggtgttactgggggacacaggcatctctgctaaaaattctatgtcc ctgcaacgtccaccaaaccctaatccctctgagagcctcagaggaagcaacaccaactac ccctttctgcccggtggtatggaggagctgacactggagcaaatcaagaagaaatcagag ctggaggaggacatagactttgagaatgggttactcacagtgccccctggactgaaagtt gggatggacttcagtgacaaagatgccaaaaccacaaagggagaaatcaacctcctgtcc ctcctgtccacctttgatgacatcgtagactcccagcctgaggcagaagagaaggagaaa ggtaacggaagtggaaacgctccaaagcttcccagaaccaacagcctggaagacctgggg atcaaggactctccctctacacctgggatcacctctacagagaagaaagatggaggaacg accaaaccaggagagggccaggaggagaagaagagatgggcaatcccagtagacatcacc tccccctgcggtgacttctataaacggatcccgaaccctgccttcaagtatccctttgag ttggacgtgttccagaagcaggcagtgttgaggctggaggcccatgagtctgtgtttgtg gcagctcacacatcagcaggcaaaaccgtggtggccgaatacgccatagcactctcacag aagcacatgaccaggaccatctatacctcccccatcaaggcgctgtccaatcagaagttc cgggacttcaagaccacctttggggacgtggggctgctgaccggggacgtccagctgagt cctgaagcctcctgtctcatcatgaccactgagatattgaggtccatgctctataacggt tcagaggtcatcagagatttagagtgggtgatctttgacgaggttcactacatcaatgat gctgagagaggagtggtgtgggaggaggttttgatcatgttacccgaccacgtcagcatt attctgctgagtgccactgtccctaacgctgtggagttcagtgagtggatcgggcgcatt aagaagaagcacatctacgtgatcagcacagcgaagagacctgtgcctctggaacattac ctgtacactggcaacagcaccaagacccagaaggagatgttcctactgctggaccctacg ggcaacttccaaaccaaggggtactatgctgctatagatgccaaaaaggaacgcaccagt aaacacgcccagtcctttgggacgaaaaatgcatctcagaacactacacccaaccaggac cgggcggtgtggctttctctcctccacttcctgtcccagcgccagcagacccccgtggtg gcgttcaccttctccaggacgcgctgcgacgacaatgcccgctctctaacctccatggac ctcaccagctcagtggagaagagcgagatccactcctttttccagaagagcctgagccgc ctcaggggaggggaccgccagctgccccagatcctgttgatgagggacctactgaagagg gggatcggcgtgcatcacagtggcatcctgccaatcctgaaggaggtcattgagatgctg ttctcgcgggggctagtaaaggttctgtttgccactgagacatttgctatgggagtgaac atgcctgcgaggacagtggtgtttgacagcatacggaaacacgatggtaccggcttcaga aacctgctgcctggtgagtatatacagatggctggtagagcaggtaggagaggtctggat gccacaggcactgtcatcatcctctgcaagtcaggggtacatgaaatgggggacctacat gtcatgatgctggggaagcccacagtgctgcagtcccagttcaggctgacctacaccatg atcctcaacctgctgcgtgtggaggccctccgagtcaccgacatgatgaggaggagcttc tctgagagccacagagacacacaggcccatgagcagcagataggtcagttgaaacagact ctgtcctctctccctcctctggacatggagggtcagctgtctgacctgctgccatactac tacactgtcactgagctacgcatcaccgctgaggcgctgcagtgtgcagttctggggtcc gtgaatgggttgaaagctctctccgtgggacgggtggtagtggtcaacaacaaacagcac ttcaacgccctcggagtcctcctacaggtgtccagcgactcagtgaatcgtacgtttact gctctcatcatctgtgagaaaggcaacgaggagggaagaggggacagcctcaacgccagt gccttcccccacctctacaacactgccctctttatacctgaaggtccctgtagtcacacg gtccagaagctgaagctacaggacgtgtcagccatcacagtcaagacccttaaggtgatc cctgaccgaatcattgacaactacaacaagagacagcagccgcgcttcaggcttgatcct ccgggccaagccatctccacggcaacccaggagctcctgcgattggcggaggccaaccca ggcgggttggtgacccttgacccagtgaacgacttccagctgaagagtgtggatgtggtg gagggcaccataaggctgcgcgtgctgcaggacagcctcaaagacttcaactgcatccac tcacccaccttctcagaacagtttctgcgggtgcaggagagattgagtgttcaggaggag ctggacaaactgctcttcctcatctcagaccagtccctgtctctattgccagagtaccac catagaatcaaggtgctccagtccctgcagtacgtggacagtagtggtgcggtgcagctg aagggcagggtggcctgccagatcagtagccatgagctgcttctcacagagctactgttt gagaacgccctgagcaccctggcccctgaggagagcgccgccctactgtcctgtctggtc tttcaacagaagacgcaggtggagccccacatcaccaacacactgcaggagggtattgag agagtgctggcggtagcccagcgtattggggagctgcagagggactgtgggataacccag acagtagaagaatttgtgggccagttcaagtttggcctgaccgaggtggtctactgctgg gccagaggcatgccatttgcagagattgcccagttaacagacgtccaggagggcacggtg gtgcgctgcatccagagactagacgaggtgctgaaggaggtgcgccaggcggcccgcatc gtaggagactcggtcctgggcagcaagatggagaaggcctccctggccatccgcagagac atcgtgttcaccgcctcgctctacacacactga

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