Coregonus clupeaformis (lake whitefish): 121571514
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Entry
121571514 CDS
T08357
Name
(RefSeq) splicing factor, proline- and glutamine-rich
KO
K13219
splicing factor, proline- and glutamine-rich
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
cclu01009
]
121571514
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cclu03021
]
121571514
03041 Spliceosome [BR:
cclu03041
]
121571514
Protein phosphatases and associated proteins [BR:
cclu01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
121571514
Transcription machinery [BR:
cclu03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
121571514
Spliceosome [BR:
cclu03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
121571514
BRITE hierarchy
Motif
Pfam:
RRM_1
NOPS
RRM_7
Motif
Other DBs
NCBI-GeneID:
121571514
NCBI-ProteinID:
XP_041738946
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All DBs
Position
8:complement(7717140..7738464)
Genome browser
AA seq
644 aa
AA seq
DB search
MSRDRFNINVRGNNRGAGFQRRGAGPGGPMRGGMGNLNNFRQNQHPFQRGPHPGNFGKPP
NQIRQITPQKPLPPTISQPGAQPIRPPPTPGPALTMKGPVQQAAAPAPAATPPAAAAAPP
VTAAAPPVTAAAPPATAAAPPAAAVTAPAAQPKMQSPPPKPVPPKPALSSPPPNQMKKPA
LSSPPPNQMNRNQQRPGPGNANGNGHKSAPANKKPEPQTQNTSMEAEEAQHPKELRATLS
SLRRPGEKTYTQRCRLFIGNLPNDISDDTFKKLFAKYGEPSEIFINKNKGFGFIRLESRA
LAEIAKAELDDVPMKGRPLRVRFATHSAALSVKNLSPFVSNELLEEAFSQFGVVERAVVI
VDDRGRSTGKGIVEFASKPAARKALDRCNDGVFLLTTSPRPIVVEPLEQYDDEDGLPEKL
AQKNHNYHKEREEPPRFARPGTFEFEYSKRWKSLDDMEKQQRQQVEKNIREAREKLEGEM
DDAFHVHQANMIRQDLLRREEELRRMEEMHSAEMQKRKEMQLRQEEERRIREEEMLRQRE
IEEQMRRKREEAYRSGNFMDNRDMRMTQGGAMGMADNQFGSPNQKFPMGHQGMGGPNAGG
AMMPNEMRNERNFPQGGRGGMGPNNPGFGRVREEFDGPAKKPRF
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atgtctcgggacagatttaacattaacgttagaggaaataaccgtggagctggatttcaa
cgccgtggagctgggcctggtggtccgatgcgaggtggaatgggtaacctgaataatttc
agacaaaaccaacacccctttcaaagagggcctcatcccggtaactttggaaaaccaccc
aaccagatacgtcagataactcctcagaagccactgccacctactatttcccagccaggc
gctcaaccgattcggccaccacctacacctggccctgcgctaaccatgaagggcccggta
cagcaggccgcggctccggcgcccgcagcaacacctccggcggccgcagcagcacctcca
gtgaccgcagcagcacctccagtgaccgcagcagcacctccagcgaccgcagcagcacct
ccagcggcggcagttactgctccggcggctcaaccaaaaatgcagtccccacctccgaag
cctgttcctccgaaacccgcactctcatctcccccaccaaaccaaatgaagaaaccagca
ctctcatctcccccaccaaaccaaatgaataggaaccagcaaagaccaggacccggcaac
gccaatggaaatggccataaatctgcacccgctaacaaaaaacctgaacctcaaactcag
aatacttcaatggaggcggaggaagcccagcaccccaaggagttgagagcgacattgtca
tcgctgcgcagacctggcgagaagacatacactcaacgatgccgccttttcattggaaac
cttccaaatgatatctcagatgacacattcaagaagctgtttgcgaagtatggcgagccc
agtgagattttcatcaacaaaaacaaaggctttggcttcatacgcctggaatcccgtgca
ttggctgagatagctaaagctgaactggatgatgtgcccatgaaaggcagaccgcttcgg
gtgcgcttcgcaactcactctgctgcactgtctgtgaagaacttgtcaccttttgtttcc
aatgagctactggaggaggccttctcccagtttggagtggtagaaagggctgtggtaatt
gtagatgatcgtgggcgctccactggcaagggcattgttgaatttgcctctaagcctgct
gcacgaaaggccctggatcgttgcaacgatggagtcttcttgctcaccacgtcacctcgt
ccaatcgtcgttgagccccttgaacaatatgatgatgaggatggtctaccagagaaactg
gcacagaagaaccacaactatcataaggagcgggaggagccacccaggtttgcccgtcct
ggcacgtttgagtttgaatactctaagcgctggaagtccctggacgacatggagaagcag
cagcgccagcaggtggagaagaacatccgcgaagcccgtgagaaactggagggagagatg
gacgacgcgttccatgtgcaccaggccaacatgatccgccaagatctgctgaggcgggag
gaggaactacgacgcatggaagagatgcacagtgcagagatgcagaagaggaaagagatg
cagctcaggcaggaggaggagcgtcgcatacgcgaggaggagatgctccgccagagggag
attgaggagcaaatgcgccgcaagcgtgaggaggcctacagaagtggcaacttcatggac
aatagggatatgagaatgactcagggtggcgccatgggcatggctgacaatcaatttggc
tcacccaaccagaagttccccatgggacaccaaggcatggggggacccaacgctggggga
gccatgatgcccaacgaaatgcgaaatgagcgaaacttccctcagggaggccggggggga
atgggtcccaacaacccagggtttggcagggtccgtgaggagtttgatgggcctgccaag
aagccccgcttttaa
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