Coregonus clupeaformis (lake whitefish): 121571613 Help Entry 121571613         CDS       T08357                                  Name (RefSeq) collagen alpha-2(IV) chain-like   KO K06237   collagen type IV alpha Organism cclu  Coregonus clupeaformis (lake whitefish) Pathway cclu04382   Cornified envelope formation cclu04510   Focal adhesion cclu04512   ECM-receptor interaction cclu04820   Cytoskeleton in muscle cells Brite KEGG Orthology (KO) [BR:cclu00001]  09130 Environmental Information Processing   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     121571613  09140 Cellular Processes   09144 Cellular community - eukaryotes    04510 Focal adhesion     121571613   09142 Cell motility    04820 Cytoskeleton in muscle cells     121571613  09150 Organismal Systems   09158 Development and regeneration    04382 Cornified envelope formation     121571613  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    04147 Exosome [BR:cclu04147]     121571613    00536 Glycosaminoglycan binding proteins [BR:cclu00536]     121571613 Exosome [BR:cclu04147]  Exosomal proteins   Exosomal proteins of other cancer cells    121571613 Glycosaminoglycan binding proteins [BR:cclu00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    121571613 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Collagen C4 Motif Other DBs NCBI-GeneID:  121571613 NCBI-ProteinID:  XP_041739108 LinkDB All DBs Position 40:25114451..25247525 Genome browser AA seq 1678 aa AA seqDB search MSGAMQTRHQSELKSLRFLLLCLSLAILASGVDAGGKKHNEPCGGRDCSGGCKCFPEKGA RGQPGPLGLQGPQGPPGRLGDPGVQGVQGEKGDRGRGGFIGPKGSVGMTGVPGFSGSDGI PGHPGQAGTRGKPGADGCNGTHGDSGLAGQPGYDGQPGYNGQAGRKGQKGDTLELSVFME RFRGDSGQPGYPGFVGPQGYPGRSGYRGLPGPQGPSGFPGLPGPKGTMTKVLKGVKGDAG EAGQPGPPGNSTHPHTSPHTGPYGRKGEKGLKGETGAEADNKGETGVMGMPGQRGVPGRD GEHGLRGDLGEPGFRGRDGQKGAIGEPGELIYYEGPSGGPNRVGPPGQLGPQGERGLQGE KGLPGRSGPPARKGDSQLQVEDLWGPFGDPGVKGEMGPPGEPGIPALSPGPPGIDGIPGF RGPPGPPGSWADFYKGSAGSRGRPGSAGKKGLKGDHGLCECNIVHSPTGLPGPAGSQGDP GMSGEFGQQGESGEPGPRGVIGLPGFPGATGQPGPKGRKGEFTRVKEKGYAGDPGDPGAT GDPGLQGFPGPSGINGSPGNSGPSGDAPEGLTGEKGYPGRPGLPGLFGQMGEPGRVLGAT KGVTGLRGDDGEPGYAGVEGRAGDPGESDCSPTGDGGLNDIKGDCVAVPGPPGMPGPPGP HGLEGFPGLLGQNGFTGPLGDEGAKGEIGEQGIGGSPGHPGFTGPRGDLGQPGAKGKPGD QGLPGQHGRDGEPGEKGPHGEIWGASTGQPGEVGLPGEQGPKGFSGEPGNEGYPGMGGMP GMIGFKGDVGPSGLQGEQGRPGAAGKYGWPGVPGQAGVPGPTGSIGQPGLSGGRGDQGDP GTPGPIGLKGTPGEFGGLGAEGNTGDLGDPGEPGPTGHSGLPGFKGIKGSRGMSGFGGMP GESGLKGFSGQKGENGIPGGFGQKGNMGDYGSKGDRGLRGMPGEKPHIPRQIINDMKGTK GEDGTPGEIGFTGPRGPKGFPGVPGMEGYHGVPGDPSDEKGFPGNPGAQGLPGPKGMPGP TGSDGISGFPGMSGHRGEKGTPGAYGSSGDPGVKGVKGEEGPVIDMPGSTGLRGDDGFPG VLGQKGYIGNPGDRGSGGFHGIEGMKGGPGEPGIGGAIGSDGQRGFPGNQGTKGWPGVPG ESGTNGQPGFPGQRGFPGLKGILGLDGLKGVKGIPGLPGQDNLGTPGVPGAKGARGETGI PNSEVGTPGSLGLKGVQGQPGDQGQVGPPGSQGPQGPQGTSDKPGPSGDPGFPGPKGLSG FPGPRGYPGAPSPYGEKGLAGQYGFPGFTGLKGKQGDQGPSGYKGQSGVSGKKGVKGEQG MMGIPGRSGFQGDRGPSGPKGNTGPIGYLGAPGNPGPAPLPPRMPGERGAPGPQGIRGPE GVRGETGPKGPPGDPGYLGPQGQKGMPGVGGRPGTPGYRGNDGGRGHLGLQGMEGHRGNP GTTGLPGMPGRSVSVGYLLVKHSQSEQTPMCPVGMSKLWDGYSLLYFEGQEKAHNQDLGL AGSCLPRFNTMPFLYCNPGDICYYASRNDKSYWLSTTAPLPMMPVEEGEIKPYISRCSVC EAPSVAIAVHSQDITIPQCPAGWRSLWIGYSFLMHTAAGDEGGGQSLSSPGSCLEDFRTT PFIECNGAKGTCHYFANKHSFWLTSIEQSFQAEPASETLKAGQLLSRISRCQVCMKNL NT seq 5037 nt NT seq  +upstreamnt  +downstreamnt atgagcggggcaatgcagacaagacaccagagtgaactgaagagcctgaggtttctgctt ctatgtctttccttggccatcctagcatcaggagttgacgcaggtggtaagaagcacaat gagccatgtggaggaagagactgtagcggaggatgtaaatgtttccctgagaagggcgcc aggggccaacctggtcctcttggcctgcagggcccccagggacctccaggacggctaggg gacccaggagtccagggagtccagggagagaagggcgaccggggcagaggaggcttcatc ggccccaagggttctgtggggatgactggtgttcctgggttttctggatcggacggtatt cctggccacccaggacaggcagggactcgtgggaaacctggagcagacgggtgcaacgga acacatggagactcagggttggcagggcaaccaggctacgatggccagcccgggtataat ggtcaggcgggcagaaagggacagaagggagacactctggagctgagtgtgttcatggag cggttcaggggagattcaggacagcccggatatcctggatttgttggtcctcagggttac ccaggtcggtcgggctacagaggactcccaggaccacagggcccatcagggtttcctggc cttcctggaccaaagggcaccatgaccaaagtgttgaagggggtcaaaggagacgcgggt gaggctggacagccaggtcccccagggaactccacccatccccataccagcccacatacc ggaccctacggcagaaagggtgagaaagggttgaaaggtgaaactggagctgaggctgac aacaaaggagagactggggttatggggatgcctgggcaaaggggtgtccctggacgggat ggagagcatggattgaggggggaccttggagaaccaggatttaggggcagagatggccaa aagggtgccatcggagaaccaggggagttgatctattatgaaggtccctcaggagggcct aacagagttggtccccctggacagctaggaccccagggagagaggggtctgcagggggag aaaggtctgccaggccgctctggacctcctgctaggaagggtgatagtcaattacaagtg gaggatctgtggggtccgttcggggatccgggtgtaaagggagagatgggcccacctgga gagccaggtatccctgctctcagccccggacccccaggtatcgacggcattcctggtttc aggggcccacccggaccaccaggatcatgggcggacttctataagggatctgcagggtcg agagggcggccaggatctgcagggaaaaaaggactgaaaggtgatcacgggttgtgtgag tgcaacattgtccactctccgacgggcctgcccggccctgctggtagccaaggcgaccct ggaatgagtggcgagtttggtcagcagggcgagtcaggcgaaccaggaccccgaggtgtc attggtctgcctgggttccctggtgccacaggacaaccaggtccaaagggcaggaagggc gagttcacccgggtcaaagagaaaggatatgccggggacccaggagacccaggtgcgaca ggtgacccaggattgcagggcttccctgggccaagtgggatcaatggatcccctgggaac agtggtccttcaggggacgcacctgagggactcactggagaaaagggttatcctggccgg ccgggtctccctgggttgtttggacagatgggagaaccgggacgggttctaggtgccact aaaggggttacagggttacgaggcgatgatggggagccgggttacgctggtgtcgaaggt cgagctggagatccaggagagtctgactgtagtccgacaggagatggaggactgaatgac atcaaaggcgattgtgttgccgtacccggaccacccggtatgccaggaccaccaggacca cacgggttagagggtttcccaggactcctaggtcaaaatggattcacaggtccacttgga gatgagggtgccaaaggagagataggagagcaaggcataggagggtctcccggacatcca ggtttcactggcccccgtggagacttgggtcagcccggcgccaagggtaaacctggagac caaggtctgccaggccaacatggtcgggacggggagcccggggaaaagggaccacacggg gagatctggggagcgtcaaccggacaacctggagaagtgggtcttcctggagagcaggga cctaaaggttttagcggagagcctggaaacgagggctacccagggatgggtggcatgcct gggatgattggtttcaagggcgacgtgggtccttcaggtctgcagggggagcaaggaaga ccgggagctgctgggaagtacggctggccaggtgtacccggacaggctggagtccctgga ccaacaggaagcatcggacaaccaggtttgagcggaggcaggggtgatcagggggaccct ggcaccccggggcccataggactgaaggggacaccgggggagtttggaggtctgggcgct gagggaaacaccggagacctgggtgaccctggagagccaggacctacaggacactctggc ctgccagggttcaagggtatcaaaggttctcgtggcatgtcagggtttggaggtatgccc ggtgagtcgggccttaagggtttctctggacagaagggagagaatggcattcccggcgga tttggacagaaaggaaacatgggcgactatggttcaaagggtgaccgtggtttgcgtggt atgccaggcgagaagccccacatccctcgtcagatcatcaatgacatgaaggggaccaag ggagaagatggaaccccaggagaaataggatttactggacccagaggtcctaaaggtttt cccggcgttcctggtatggagggctaccatggcgttcccggagaccccagcgatgagaag ggtttcccaggcaacccaggggcgcagggacttccagggccaaaaggaatgccaggtccg actggatcagacggaatcagcggctttcctgggatgtccggtcacaggggggagaaaggt acccccggtgcctacggatcttcaggagatccaggagtgaagggggtcaaaggtgaggag ggtcccgtaatcgacatgcccggatccacaggactgaggggggatgatggtttcccaggg gttctaggtcagaagggctacattgggaatccgggagacaggggcagtggtggtttccat ggtattgagggcatgaaaggggggccgggagagcctggcataggaggagctataggatct gatggtcaacgagggtttccaggcaaccagggtacgaagggatggcctggggtcccagga gaatcaggcacaaatggacaaccaggcttcccaggacagagaggttttcctggcctgaag ggtatattgggactggatggactgaagggtgtgaagggcatccctggactcccaggtcag gataacttgggaaccccaggtgttcccggtgctaagggagcgaggggtgagacaggtata cccaactcggaggtcgggaccccaggatcgctgggtttgaagggcgttcaaggacaacca ggtgaccagggccaggtgggacccccagggtctcagggcccccaaggaccacagggcacc tcagacaaacctggaccatcaggagaccctggcttccctggacccaaagggctgtcaggt ttccctgggccccgtggatatcctggtgcgccctctccatacggagagaagggtttagct ggccagtatggcttccctggattcactggtctgaaaggaaagcagggggatcagggacca tcaggatacaaaggacagagcggagtgtctgggaagaaaggtgtgaagggagagcaaggg atgatgggaattcctggtaggtctggtttccaaggagatcgaggtccttctggcccaaaa ggaaatactggacccataggttatctgggagccccaggtaacccgggcccagccccactc ccccccaggatgccaggagaaaggggtgctccagggcctcagggcatccgaggacctgag ggggtacgaggggagactggcccgaaaggaccccctggagatccaggctacctgggcccc caggggcagaaggggatgccaggggtgggtggcagaccgggtacccccgggtaccgtggg aatgacggagggaggggccaccttggtcttcaaggcatggaaggacaccgtggtaaccca ggtactacagggttgcctggcatgcctggacgcagtgtgagtgtgggatacctgctggtg aagcacagccaatcagagcagacccccatgtgccctgtgggcatgtccaagctgtgggac ggctacagtctgctgtacttcgagggccaggagaaggcccacaaccaggacctaggtctg gcaggctcctgccttcctcgtttcaacaccatgcccttcctgtactgcaaccccggagac atctgctactacgccagccgcaatgacaagtcctattggctgtccaccaccgcacccctt cccatgatgcctgtggaggagggcgagatcaaaccctacatcagccgctgctctgtgtgt gaggctccgtccgtcgccatcgctgtgcatagccaggacatcaccatcccacaatgccct gcgggctggcgcagcctgtggattggctactccttccttatgcacacagcagcaggtgac gagggtggtggtcagtctctgtcatcccctggttcctgtctggaggatttccgcaccact cccttcatcgagtgtaacggggccaagggtacctgccattacttcgccaacaaacacagc ttctggctcacctccatcgaacagtccttccaggccgagcctgcatccgagaccctgaaa gcaggccagctcctctcacgcatcagccgctgtcaggtctgcatgaagaacctgtga

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