KEGG   Coregonus clupeaformis (lake whitefish): 121571613
Entry
121571613         CDS       T08357                                 
Name
(RefSeq) collagen alpha-2(IV) chain-like
  KO
K06237  collagen type IV alpha
Organism
cclu  Coregonus clupeaformis (lake whitefish)
Pathway
cclu04382  Cornified envelope formation
cclu04510  Focal adhesion
cclu04512  ECM-receptor interaction
cclu04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:cclu00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    121571613
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    121571613
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    121571613
 09150 Organismal Systems
  09158 Development and regeneration
   04382 Cornified envelope formation
    121571613
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:cclu04147]
    121571613
   00536 Glycosaminoglycan binding proteins [BR:cclu00536]
    121571613
Exosome [BR:cclu04147]
 Exosomal proteins
  Exosomal proteins of other cancer cells
   121571613
Glycosaminoglycan binding proteins [BR:cclu00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   121571613
SSDB
Motif
Pfam: Collagen C4
Other DBs
NCBI-GeneID: 121571613
NCBI-ProteinID: XP_041739108
LinkDB
Position
40:25114451..25247525
AA seq 1678 aa
MSGAMQTRHQSELKSLRFLLLCLSLAILASGVDAGGKKHNEPCGGRDCSGGCKCFPEKGA
RGQPGPLGLQGPQGPPGRLGDPGVQGVQGEKGDRGRGGFIGPKGSVGMTGVPGFSGSDGI
PGHPGQAGTRGKPGADGCNGTHGDSGLAGQPGYDGQPGYNGQAGRKGQKGDTLELSVFME
RFRGDSGQPGYPGFVGPQGYPGRSGYRGLPGPQGPSGFPGLPGPKGTMTKVLKGVKGDAG
EAGQPGPPGNSTHPHTSPHTGPYGRKGEKGLKGETGAEADNKGETGVMGMPGQRGVPGRD
GEHGLRGDLGEPGFRGRDGQKGAIGEPGELIYYEGPSGGPNRVGPPGQLGPQGERGLQGE
KGLPGRSGPPARKGDSQLQVEDLWGPFGDPGVKGEMGPPGEPGIPALSPGPPGIDGIPGF
RGPPGPPGSWADFYKGSAGSRGRPGSAGKKGLKGDHGLCECNIVHSPTGLPGPAGSQGDP
GMSGEFGQQGESGEPGPRGVIGLPGFPGATGQPGPKGRKGEFTRVKEKGYAGDPGDPGAT
GDPGLQGFPGPSGINGSPGNSGPSGDAPEGLTGEKGYPGRPGLPGLFGQMGEPGRVLGAT
KGVTGLRGDDGEPGYAGVEGRAGDPGESDCSPTGDGGLNDIKGDCVAVPGPPGMPGPPGP
HGLEGFPGLLGQNGFTGPLGDEGAKGEIGEQGIGGSPGHPGFTGPRGDLGQPGAKGKPGD
QGLPGQHGRDGEPGEKGPHGEIWGASTGQPGEVGLPGEQGPKGFSGEPGNEGYPGMGGMP
GMIGFKGDVGPSGLQGEQGRPGAAGKYGWPGVPGQAGVPGPTGSIGQPGLSGGRGDQGDP
GTPGPIGLKGTPGEFGGLGAEGNTGDLGDPGEPGPTGHSGLPGFKGIKGSRGMSGFGGMP
GESGLKGFSGQKGENGIPGGFGQKGNMGDYGSKGDRGLRGMPGEKPHIPRQIINDMKGTK
GEDGTPGEIGFTGPRGPKGFPGVPGMEGYHGVPGDPSDEKGFPGNPGAQGLPGPKGMPGP
TGSDGISGFPGMSGHRGEKGTPGAYGSSGDPGVKGVKGEEGPVIDMPGSTGLRGDDGFPG
VLGQKGYIGNPGDRGSGGFHGIEGMKGGPGEPGIGGAIGSDGQRGFPGNQGTKGWPGVPG
ESGTNGQPGFPGQRGFPGLKGILGLDGLKGVKGIPGLPGQDNLGTPGVPGAKGARGETGI
PNSEVGTPGSLGLKGVQGQPGDQGQVGPPGSQGPQGPQGTSDKPGPSGDPGFPGPKGLSG
FPGPRGYPGAPSPYGEKGLAGQYGFPGFTGLKGKQGDQGPSGYKGQSGVSGKKGVKGEQG
MMGIPGRSGFQGDRGPSGPKGNTGPIGYLGAPGNPGPAPLPPRMPGERGAPGPQGIRGPE
GVRGETGPKGPPGDPGYLGPQGQKGMPGVGGRPGTPGYRGNDGGRGHLGLQGMEGHRGNP
GTTGLPGMPGRSVSVGYLLVKHSQSEQTPMCPVGMSKLWDGYSLLYFEGQEKAHNQDLGL
AGSCLPRFNTMPFLYCNPGDICYYASRNDKSYWLSTTAPLPMMPVEEGEIKPYISRCSVC
EAPSVAIAVHSQDITIPQCPAGWRSLWIGYSFLMHTAAGDEGGGQSLSSPGSCLEDFRTT
PFIECNGAKGTCHYFANKHSFWLTSIEQSFQAEPASETLKAGQLLSRISRCQVCMKNL
NT seq 5037 nt   +upstreamnt  +downstreamnt
atgagcggggcaatgcagacaagacaccagagtgaactgaagagcctgaggtttctgctt
ctatgtctttccttggccatcctagcatcaggagttgacgcaggtggtaagaagcacaat
gagccatgtggaggaagagactgtagcggaggatgtaaatgtttccctgagaagggcgcc
aggggccaacctggtcctcttggcctgcagggcccccagggacctccaggacggctaggg
gacccaggagtccagggagtccagggagagaagggcgaccggggcagaggaggcttcatc
ggccccaagggttctgtggggatgactggtgttcctgggttttctggatcggacggtatt
cctggccacccaggacaggcagggactcgtgggaaacctggagcagacgggtgcaacgga
acacatggagactcagggttggcagggcaaccaggctacgatggccagcccgggtataat
ggtcaggcgggcagaaagggacagaagggagacactctggagctgagtgtgttcatggag
cggttcaggggagattcaggacagcccggatatcctggatttgttggtcctcagggttac
ccaggtcggtcgggctacagaggactcccaggaccacagggcccatcagggtttcctggc
cttcctggaccaaagggcaccatgaccaaagtgttgaagggggtcaaaggagacgcgggt
gaggctggacagccaggtcccccagggaactccacccatccccataccagcccacatacc
ggaccctacggcagaaagggtgagaaagggttgaaaggtgaaactggagctgaggctgac
aacaaaggagagactggggttatggggatgcctgggcaaaggggtgtccctggacgggat
ggagagcatggattgaggggggaccttggagaaccaggatttaggggcagagatggccaa
aagggtgccatcggagaaccaggggagttgatctattatgaaggtccctcaggagggcct
aacagagttggtccccctggacagctaggaccccagggagagaggggtctgcagggggag
aaaggtctgccaggccgctctggacctcctgctaggaagggtgatagtcaattacaagtg
gaggatctgtggggtccgttcggggatccgggtgtaaagggagagatgggcccacctgga
gagccaggtatccctgctctcagccccggacccccaggtatcgacggcattcctggtttc
aggggcccacccggaccaccaggatcatgggcggacttctataagggatctgcagggtcg
agagggcggccaggatctgcagggaaaaaaggactgaaaggtgatcacgggttgtgtgag
tgcaacattgtccactctccgacgggcctgcccggccctgctggtagccaaggcgaccct
ggaatgagtggcgagtttggtcagcagggcgagtcaggcgaaccaggaccccgaggtgtc
attggtctgcctgggttccctggtgccacaggacaaccaggtccaaagggcaggaagggc
gagttcacccgggtcaaagagaaaggatatgccggggacccaggagacccaggtgcgaca
ggtgacccaggattgcagggcttccctgggccaagtgggatcaatggatcccctgggaac
agtggtccttcaggggacgcacctgagggactcactggagaaaagggttatcctggccgg
ccgggtctccctgggttgtttggacagatgggagaaccgggacgggttctaggtgccact
aaaggggttacagggttacgaggcgatgatggggagccgggttacgctggtgtcgaaggt
cgagctggagatccaggagagtctgactgtagtccgacaggagatggaggactgaatgac
atcaaaggcgattgtgttgccgtacccggaccacccggtatgccaggaccaccaggacca
cacgggttagagggtttcccaggactcctaggtcaaaatggattcacaggtccacttgga
gatgagggtgccaaaggagagataggagagcaaggcataggagggtctcccggacatcca
ggtttcactggcccccgtggagacttgggtcagcccggcgccaagggtaaacctggagac
caaggtctgccaggccaacatggtcgggacggggagcccggggaaaagggaccacacggg
gagatctggggagcgtcaaccggacaacctggagaagtgggtcttcctggagagcaggga
cctaaaggttttagcggagagcctggaaacgagggctacccagggatgggtggcatgcct
gggatgattggtttcaagggcgacgtgggtccttcaggtctgcagggggagcaaggaaga
ccgggagctgctgggaagtacggctggccaggtgtacccggacaggctggagtccctgga
ccaacaggaagcatcggacaaccaggtttgagcggaggcaggggtgatcagggggaccct
ggcaccccggggcccataggactgaaggggacaccgggggagtttggaggtctgggcgct
gagggaaacaccggagacctgggtgaccctggagagccaggacctacaggacactctggc
ctgccagggttcaagggtatcaaaggttctcgtggcatgtcagggtttggaggtatgccc
ggtgagtcgggccttaagggtttctctggacagaagggagagaatggcattcccggcgga
tttggacagaaaggaaacatgggcgactatggttcaaagggtgaccgtggtttgcgtggt
atgccaggcgagaagccccacatccctcgtcagatcatcaatgacatgaaggggaccaag
ggagaagatggaaccccaggagaaataggatttactggacccagaggtcctaaaggtttt
cccggcgttcctggtatggagggctaccatggcgttcccggagaccccagcgatgagaag
ggtttcccaggcaacccaggggcgcagggacttccagggccaaaaggaatgccaggtccg
actggatcagacggaatcagcggctttcctgggatgtccggtcacaggggggagaaaggt
acccccggtgcctacggatcttcaggagatccaggagtgaagggggtcaaaggtgaggag
ggtcccgtaatcgacatgcccggatccacaggactgaggggggatgatggtttcccaggg
gttctaggtcagaagggctacattgggaatccgggagacaggggcagtggtggtttccat
ggtattgagggcatgaaaggggggccgggagagcctggcataggaggagctataggatct
gatggtcaacgagggtttccaggcaaccagggtacgaagggatggcctggggtcccagga
gaatcaggcacaaatggacaaccaggcttcccaggacagagaggttttcctggcctgaag
ggtatattgggactggatggactgaagggtgtgaagggcatccctggactcccaggtcag
gataacttgggaaccccaggtgttcccggtgctaagggagcgaggggtgagacaggtata
cccaactcggaggtcgggaccccaggatcgctgggtttgaagggcgttcaaggacaacca
ggtgaccagggccaggtgggacccccagggtctcagggcccccaaggaccacagggcacc
tcagacaaacctggaccatcaggagaccctggcttccctggacccaaagggctgtcaggt
ttccctgggccccgtggatatcctggtgcgccctctccatacggagagaagggtttagct
ggccagtatggcttccctggattcactggtctgaaaggaaagcagggggatcagggacca
tcaggatacaaaggacagagcggagtgtctgggaagaaaggtgtgaagggagagcaaggg
atgatgggaattcctggtaggtctggtttccaaggagatcgaggtccttctggcccaaaa
ggaaatactggacccataggttatctgggagccccaggtaacccgggcccagccccactc
ccccccaggatgccaggagaaaggggtgctccagggcctcagggcatccgaggacctgag
ggggtacgaggggagactggcccgaaaggaccccctggagatccaggctacctgggcccc
caggggcagaaggggatgccaggggtgggtggcagaccgggtacccccgggtaccgtggg
aatgacggagggaggggccaccttggtcttcaaggcatggaaggacaccgtggtaaccca
ggtactacagggttgcctggcatgcctggacgcagtgtgagtgtgggatacctgctggtg
aagcacagccaatcagagcagacccccatgtgccctgtgggcatgtccaagctgtgggac
ggctacagtctgctgtacttcgagggccaggagaaggcccacaaccaggacctaggtctg
gcaggctcctgccttcctcgtttcaacaccatgcccttcctgtactgcaaccccggagac
atctgctactacgccagccgcaatgacaagtcctattggctgtccaccaccgcacccctt
cccatgatgcctgtggaggagggcgagatcaaaccctacatcagccgctgctctgtgtgt
gaggctccgtccgtcgccatcgctgtgcatagccaggacatcaccatcccacaatgccct
gcgggctggcgcagcctgtggattggctactccttccttatgcacacagcagcaggtgac
gagggtggtggtcagtctctgtcatcccctggttcctgtctggaggatttccgcaccact
cccttcatcgagtgtaacggggccaagggtacctgccattacttcgccaacaaacacagc
ttctggctcacctccatcgaacagtccttccaggccgagcctgcatccgagaccctgaaa
gcaggccagctcctctcacgcatcagccgctgtcaggtctgcatgaagaacctgtga

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