Coregonus clupeaformis (lake whitefish): 121571613
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Entry
121571613 CDS
T08357
Name
(RefSeq) collagen alpha-2(IV) chain-like
KO
K06237
collagen type IV alpha
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04382
Cornified envelope formation
cclu04510
Focal adhesion
cclu04512
ECM-receptor interaction
cclu04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
121571613
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
121571613
09142 Cell motility
04820 Cytoskeleton in muscle cells
121571613
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
121571613
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
cclu04147
]
121571613
00536 Glycosaminoglycan binding proteins [BR:
cclu00536
]
121571613
Exosome [BR:
cclu04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
121571613
Glycosaminoglycan binding proteins [BR:
cclu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
121571613
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
121571613
NCBI-ProteinID:
XP_041739108
LinkDB
All DBs
Position
40:25114451..25247525
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AA seq
1678 aa
AA seq
DB search
MSGAMQTRHQSELKSLRFLLLCLSLAILASGVDAGGKKHNEPCGGRDCSGGCKCFPEKGA
RGQPGPLGLQGPQGPPGRLGDPGVQGVQGEKGDRGRGGFIGPKGSVGMTGVPGFSGSDGI
PGHPGQAGTRGKPGADGCNGTHGDSGLAGQPGYDGQPGYNGQAGRKGQKGDTLELSVFME
RFRGDSGQPGYPGFVGPQGYPGRSGYRGLPGPQGPSGFPGLPGPKGTMTKVLKGVKGDAG
EAGQPGPPGNSTHPHTSPHTGPYGRKGEKGLKGETGAEADNKGETGVMGMPGQRGVPGRD
GEHGLRGDLGEPGFRGRDGQKGAIGEPGELIYYEGPSGGPNRVGPPGQLGPQGERGLQGE
KGLPGRSGPPARKGDSQLQVEDLWGPFGDPGVKGEMGPPGEPGIPALSPGPPGIDGIPGF
RGPPGPPGSWADFYKGSAGSRGRPGSAGKKGLKGDHGLCECNIVHSPTGLPGPAGSQGDP
GMSGEFGQQGESGEPGPRGVIGLPGFPGATGQPGPKGRKGEFTRVKEKGYAGDPGDPGAT
GDPGLQGFPGPSGINGSPGNSGPSGDAPEGLTGEKGYPGRPGLPGLFGQMGEPGRVLGAT
KGVTGLRGDDGEPGYAGVEGRAGDPGESDCSPTGDGGLNDIKGDCVAVPGPPGMPGPPGP
HGLEGFPGLLGQNGFTGPLGDEGAKGEIGEQGIGGSPGHPGFTGPRGDLGQPGAKGKPGD
QGLPGQHGRDGEPGEKGPHGEIWGASTGQPGEVGLPGEQGPKGFSGEPGNEGYPGMGGMP
GMIGFKGDVGPSGLQGEQGRPGAAGKYGWPGVPGQAGVPGPTGSIGQPGLSGGRGDQGDP
GTPGPIGLKGTPGEFGGLGAEGNTGDLGDPGEPGPTGHSGLPGFKGIKGSRGMSGFGGMP
GESGLKGFSGQKGENGIPGGFGQKGNMGDYGSKGDRGLRGMPGEKPHIPRQIINDMKGTK
GEDGTPGEIGFTGPRGPKGFPGVPGMEGYHGVPGDPSDEKGFPGNPGAQGLPGPKGMPGP
TGSDGISGFPGMSGHRGEKGTPGAYGSSGDPGVKGVKGEEGPVIDMPGSTGLRGDDGFPG
VLGQKGYIGNPGDRGSGGFHGIEGMKGGPGEPGIGGAIGSDGQRGFPGNQGTKGWPGVPG
ESGTNGQPGFPGQRGFPGLKGILGLDGLKGVKGIPGLPGQDNLGTPGVPGAKGARGETGI
PNSEVGTPGSLGLKGVQGQPGDQGQVGPPGSQGPQGPQGTSDKPGPSGDPGFPGPKGLSG
FPGPRGYPGAPSPYGEKGLAGQYGFPGFTGLKGKQGDQGPSGYKGQSGVSGKKGVKGEQG
MMGIPGRSGFQGDRGPSGPKGNTGPIGYLGAPGNPGPAPLPPRMPGERGAPGPQGIRGPE
GVRGETGPKGPPGDPGYLGPQGQKGMPGVGGRPGTPGYRGNDGGRGHLGLQGMEGHRGNP
GTTGLPGMPGRSVSVGYLLVKHSQSEQTPMCPVGMSKLWDGYSLLYFEGQEKAHNQDLGL
AGSCLPRFNTMPFLYCNPGDICYYASRNDKSYWLSTTAPLPMMPVEEGEIKPYISRCSVC
EAPSVAIAVHSQDITIPQCPAGWRSLWIGYSFLMHTAAGDEGGGQSLSSPGSCLEDFRTT
PFIECNGAKGTCHYFANKHSFWLTSIEQSFQAEPASETLKAGQLLSRISRCQVCMKNL
NT seq
5037 nt
NT seq
+upstream
nt +downstream
nt
atgagcggggcaatgcagacaagacaccagagtgaactgaagagcctgaggtttctgctt
ctatgtctttccttggccatcctagcatcaggagttgacgcaggtggtaagaagcacaat
gagccatgtggaggaagagactgtagcggaggatgtaaatgtttccctgagaagggcgcc
aggggccaacctggtcctcttggcctgcagggcccccagggacctccaggacggctaggg
gacccaggagtccagggagtccagggagagaagggcgaccggggcagaggaggcttcatc
ggccccaagggttctgtggggatgactggtgttcctgggttttctggatcggacggtatt
cctggccacccaggacaggcagggactcgtgggaaacctggagcagacgggtgcaacgga
acacatggagactcagggttggcagggcaaccaggctacgatggccagcccgggtataat
ggtcaggcgggcagaaagggacagaagggagacactctggagctgagtgtgttcatggag
cggttcaggggagattcaggacagcccggatatcctggatttgttggtcctcagggttac
ccaggtcggtcgggctacagaggactcccaggaccacagggcccatcagggtttcctggc
cttcctggaccaaagggcaccatgaccaaagtgttgaagggggtcaaaggagacgcgggt
gaggctggacagccaggtcccccagggaactccacccatccccataccagcccacatacc
ggaccctacggcagaaagggtgagaaagggttgaaaggtgaaactggagctgaggctgac
aacaaaggagagactggggttatggggatgcctgggcaaaggggtgtccctggacgggat
ggagagcatggattgaggggggaccttggagaaccaggatttaggggcagagatggccaa
aagggtgccatcggagaaccaggggagttgatctattatgaaggtccctcaggagggcct
aacagagttggtccccctggacagctaggaccccagggagagaggggtctgcagggggag
aaaggtctgccaggccgctctggacctcctgctaggaagggtgatagtcaattacaagtg
gaggatctgtggggtccgttcggggatccgggtgtaaagggagagatgggcccacctgga
gagccaggtatccctgctctcagccccggacccccaggtatcgacggcattcctggtttc
aggggcccacccggaccaccaggatcatgggcggacttctataagggatctgcagggtcg
agagggcggccaggatctgcagggaaaaaaggactgaaaggtgatcacgggttgtgtgag
tgcaacattgtccactctccgacgggcctgcccggccctgctggtagccaaggcgaccct
ggaatgagtggcgagtttggtcagcagggcgagtcaggcgaaccaggaccccgaggtgtc
attggtctgcctgggttccctggtgccacaggacaaccaggtccaaagggcaggaagggc
gagttcacccgggtcaaagagaaaggatatgccggggacccaggagacccaggtgcgaca
ggtgacccaggattgcagggcttccctgggccaagtgggatcaatggatcccctgggaac
agtggtccttcaggggacgcacctgagggactcactggagaaaagggttatcctggccgg
ccgggtctccctgggttgtttggacagatgggagaaccgggacgggttctaggtgccact
aaaggggttacagggttacgaggcgatgatggggagccgggttacgctggtgtcgaaggt
cgagctggagatccaggagagtctgactgtagtccgacaggagatggaggactgaatgac
atcaaaggcgattgtgttgccgtacccggaccacccggtatgccaggaccaccaggacca
cacgggttagagggtttcccaggactcctaggtcaaaatggattcacaggtccacttgga
gatgagggtgccaaaggagagataggagagcaaggcataggagggtctcccggacatcca
ggtttcactggcccccgtggagacttgggtcagcccggcgccaagggtaaacctggagac
caaggtctgccaggccaacatggtcgggacggggagcccggggaaaagggaccacacggg
gagatctggggagcgtcaaccggacaacctggagaagtgggtcttcctggagagcaggga
cctaaaggttttagcggagagcctggaaacgagggctacccagggatgggtggcatgcct
gggatgattggtttcaagggcgacgtgggtccttcaggtctgcagggggagcaaggaaga
ccgggagctgctgggaagtacggctggccaggtgtacccggacaggctggagtccctgga
ccaacaggaagcatcggacaaccaggtttgagcggaggcaggggtgatcagggggaccct
ggcaccccggggcccataggactgaaggggacaccgggggagtttggaggtctgggcgct
gagggaaacaccggagacctgggtgaccctggagagccaggacctacaggacactctggc
ctgccagggttcaagggtatcaaaggttctcgtggcatgtcagggtttggaggtatgccc
ggtgagtcgggccttaagggtttctctggacagaagggagagaatggcattcccggcgga
tttggacagaaaggaaacatgggcgactatggttcaaagggtgaccgtggtttgcgtggt
atgccaggcgagaagccccacatccctcgtcagatcatcaatgacatgaaggggaccaag
ggagaagatggaaccccaggagaaataggatttactggacccagaggtcctaaaggtttt
cccggcgttcctggtatggagggctaccatggcgttcccggagaccccagcgatgagaag
ggtttcccaggcaacccaggggcgcagggacttccagggccaaaaggaatgccaggtccg
actggatcagacggaatcagcggctttcctgggatgtccggtcacaggggggagaaaggt
acccccggtgcctacggatcttcaggagatccaggagtgaagggggtcaaaggtgaggag
ggtcccgtaatcgacatgcccggatccacaggactgaggggggatgatggtttcccaggg
gttctaggtcagaagggctacattgggaatccgggagacaggggcagtggtggtttccat
ggtattgagggcatgaaaggggggccgggagagcctggcataggaggagctataggatct
gatggtcaacgagggtttccaggcaaccagggtacgaagggatggcctggggtcccagga
gaatcaggcacaaatggacaaccaggcttcccaggacagagaggttttcctggcctgaag
ggtatattgggactggatggactgaagggtgtgaagggcatccctggactcccaggtcag
gataacttgggaaccccaggtgttcccggtgctaagggagcgaggggtgagacaggtata
cccaactcggaggtcgggaccccaggatcgctgggtttgaagggcgttcaaggacaacca
ggtgaccagggccaggtgggacccccagggtctcagggcccccaaggaccacagggcacc
tcagacaaacctggaccatcaggagaccctggcttccctggacccaaagggctgtcaggt
ttccctgggccccgtggatatcctggtgcgccctctccatacggagagaagggtttagct
ggccagtatggcttccctggattcactggtctgaaaggaaagcagggggatcagggacca
tcaggatacaaaggacagagcggagtgtctgggaagaaaggtgtgaagggagagcaaggg
atgatgggaattcctggtaggtctggtttccaaggagatcgaggtccttctggcccaaaa
ggaaatactggacccataggttatctgggagccccaggtaacccgggcccagccccactc
ccccccaggatgccaggagaaaggggtgctccagggcctcagggcatccgaggacctgag
ggggtacgaggggagactggcccgaaaggaccccctggagatccaggctacctgggcccc
caggggcagaaggggatgccaggggtgggtggcagaccgggtacccccgggtaccgtggg
aatgacggagggaggggccaccttggtcttcaaggcatggaaggacaccgtggtaaccca
ggtactacagggttgcctggcatgcctggacgcagtgtgagtgtgggatacctgctggtg
aagcacagccaatcagagcagacccccatgtgccctgtgggcatgtccaagctgtgggac
ggctacagtctgctgtacttcgagggccaggagaaggcccacaaccaggacctaggtctg
gcaggctcctgccttcctcgtttcaacaccatgcccttcctgtactgcaaccccggagac
atctgctactacgccagccgcaatgacaagtcctattggctgtccaccaccgcacccctt
cccatgatgcctgtggaggagggcgagatcaaaccctacatcagccgctgctctgtgtgt
gaggctccgtccgtcgccatcgctgtgcatagccaggacatcaccatcccacaatgccct
gcgggctggcgcagcctgtggattggctactccttccttatgcacacagcagcaggtgac
gagggtggtggtcagtctctgtcatcccctggttcctgtctggaggatttccgcaccact
cccttcatcgagtgtaacggggccaagggtacctgccattacttcgccaacaaacacagc
ttctggctcacctccatcgaacagtccttccaggccgagcctgcatccgagaccctgaaa
gcaggccagctcctctcacgcatcagccgctgtcaggtctgcatgaagaacctgtga
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