Coregonus clupeaformis (lake whitefish): 121571705
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Entry
121571705 CDS
T08357
Name
(RefSeq) polyribonucleotide nucleotidyltransferase 1, mitochondrial-like
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121571705
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cclu03019
]
121571705
03016 Transfer RNA biogenesis [BR:
cclu03016
]
121571705
Enzymes [BR:
cclu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
121571705
Messenger RNA biogenesis [BR:
cclu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
121571705
Transfer RNA biogenesis [BR:
cclu03016
]
Prokaryotic type
tRNA degradation factors
121571705
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
PNPase
KH_1
S1
KH_KRR1_2nd
KH-I_KHDC4-BBP
Motif
Other DBs
NCBI-GeneID:
121571705
NCBI-ProteinID:
XP_041739278
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All DBs
Position
1:complement(64282028..64291272)
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AA seq
770 aa
AA seq
DB search
MRHLLRLGPSLARLNVRLCHQSVWNSHGTIRKVGVDLGEKKLEISTGKLARFADGSAVVQ
LGDTTVMVTAVSKTKPSPSQFMPLVVDYRQKAAAAGRIPTNHLRRELGTTENEILTSRLI
DRAIRPLFPAGYFYDTQVLCNLLAVDGVNDPDVLAINGASAALSLSDIPWNGPIGAVRIG
LVNGEFLVNPTRKEMASSTINLIVAGAPLSQVVMIEASAENVLQQDFCHAVKVGVKHTQQ
IILAIQQMAREAKVSKRTPPKIFSAPAVMIEHTRQLASEKVYAVFTDFTHDKISRDDAIN
KVRLETEEQIKEKYPEAEPYEVMESFNMVSKEVFRNLVLNEYRRCDGRDLTSLRNISCEA
DIFKPLHGSALFQRGQTQVLCSITFDSLESSIKTDIITTALSGVKDKNFMLHYEFPPYAT
NEIGKMSGMNRRELGHGALAEKSLRPVIPKDFPFTIRVTSEVLESNGSSSMASACGGSLA
LMDAGVPISSAVAGVAVGLISKANPEKPSEIQDYRILTDILGIEDYLGDMDFKLAGTNKG
INALQVDVKIPGLPLKLVMEAIQQATVAKREILGIMNKTIAKPRDKRKENGPVVENVRVP
VSRRARFVGPGGYNLRRLQAQTGVTISQVDEETFSVFAPTPGAMNEAQEFITEICKDDQE
QQLEFGAVYTATIMEIRDIGVMVKLYPNMSAVLLHNSQLDHKRIKHPSALGLEVGQQIQV
KYFGRDPTDGRMRLSRKVLQSPAATVVKTLSEKQSINMGTGNGQATSTSS
NT seq
2313 nt
NT seq
+upstream
nt +downstream
nt
atgagacatttactgaggcttgggccctcgctggccagactaaatgtgcggttgtgccac
caaagcgtctggaacagccatggaacgatacgaaaagtgggagtggacttgggtgagaaa
aaacttgagatctcaacagggaaacttgccagatttgcagatgggtcggctgttgtgcag
cttggggatacaacagtgatggtgacagctgtcagcaaaacaaaaccgtccccctcacaa
tttatgccactagtggtggactacagacagaaagcagctgctgctggtagaatccccact
aaccacctgcggcgggagttgggcaccactgaaaatgagattctgactagtaggctaata
gacagggcaatcagacccctttttcctgctggttatttctatgacactcaggtcctgtgt
aacctgttggcagttgatggcgtaaatgatccagatgtactggccattaatggagcctct
gctgccctttccctgtctgacattccctggaatgggcccattggtgcagtgcgcattggc
ctggtgaatggagagtttctggtgaacccaacacgaaaggaaatggcttccagcactatc
aacctgatagtggctggagcacctctcagccaagtggtgatgatcgaggcatctgctgag
aatgtgttgcagcaggacttctgtcatgcagtcaaggttggcgtgaagcacacacagcag
atcatactggctattcagcagatggccagagaagcaaaggtgtccaagcgcacccctccc
aaaatcttttctgctcctgcggtaatgattgagcatacacgacagttggcctctgaaaag
gtctacgctgttttcacagacttcactcatgacaaaatttccagggatgatgccattaac
aaagtaaggcttgaaacagaggaacaaataaaagagaaatatcctgaagcagaaccttat
gaggtgatggagtccttcaacatggtatcaaaagaggttttccgcaatctggttttgaac
gaatacaggaggtgtgatggaagagacctgacttcattgagaaatatttcctgtgaggcg
gacatctttaagccccttcatgggtcggcacttttccagaggggacagacacaggttctg
tgctctataacatttgactccttggagtctagtattaaaacagacatcattactacagcg
ttaagtggagtcaaagacaagaatttcatgcttcactatgagtttccaccttatgcaacc
aatgagattggaaagatgagtggaatgaacagaagagagcttggtcatggggcactggct
gagaagtctttgagacctgtcatccccaaagacttccccttcactattagagttacctct
gaggttctggagtctaatgggtcctcgtctatggcatcagcatgtggaggcagtctggct
ttgatggatgctggtgttcctatttcatcagctgtggcaggtgttgctgttggactcata
tccaaggcaaacccagagaagccatcagaaatccaggactaccgaatattgactgatatt
ctgggaatagaggattacctaggagacatggacttcaaactggctggaacaaacaagggt
atcaatgccttacaggttgatgtgaagattccaggcttaccgctgaaacttgtaatggag
gctattcagcaagccacagttgccaagagggagattttgggcatcatgaacaagaccatt
gcgaagccaagggacaaaagaaaggagaatggcccagttgtcgaaaatgtcagagtccct
gtctccagacgagcacgctttgttgggccagggggctataacctccgtagactacaagct
caaacaggtgtgacgataagccaggtggacgaggagaccttctctgtgtttgcacctact
cctggtgccatgaatgaagcccaggagttcatcacagaaatctgcaaggatgatcaagag
cagcagctggaatttggtgctgtttacactgccaccatcatggaaataagggacattggt
gtcatggtgaagctgtatcccaacatgagtgccgttctgctccataactctcagctggac
cacaaacggataaaacacccaagtgctcttggattagaggttggacagcagattcaggtt
aaatactttgggcgagacccaacagatggaagaatgaggctttcgaggaaggtgttacaa
tctccagcagcaacagttgttaagacactgagtgaaaagcagagcatcaacatgggcaca
gggaatggccaagcgaccagcacctcctcttga
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