Coregonus clupeaformis (lake whitefish): 121571818
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Entry
121571818 CDS
T08357
Name
(RefSeq) spectrin beta chain, non-erythrocytic 1
KO
K06115
spectrin beta, non-erythrocytic 1/4/5
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04517
IgSF CAM signaling
cclu04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
121571818
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
121571818
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
cclu04812
]
121571818
Cytoskeleton proteins [BR:
cclu04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Cross-linking proteins
121571818
Intermediate filaments
Intermediate filament-binding proteins
121571818
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Spectrin
CH
PH_9
PH
PH_11
SOS1_NGEF_PH
CH_2
CAMSAP_CH
Motif
Other DBs
NCBI-GeneID:
121571818
NCBI-ProteinID:
XP_045078230
LinkDB
All DBs
Position
1:complement(64640701..64697025)
Genome browser
AA seq
2234 aa
AA seq
DB search
MRIHCLENVDKALQFLKEQRVHLENMGSHDIVDGNHRLTLGLIWTIILRFQIQDIRVETE
DNKEKKSAKDALLLWCQMKTAGYPNVNIHNFSTSWRDGMAFNAILHKHRPDLIDFDKLKK
SNAHHNLQNAFNLAEQHLGLHKLLDVEDISVDHPDEKSIITYVVTYYHYFSKMKALKVEG
KRIGKVLDNAIETDNMIQKYESLASDLLEWIEQTIIILNNRRFANSLVGVQQQLQAFNTY
RTVEKPPKFTEKGNLEVLLFTIQSKMRANNQKVYIPRDGKLISDINKAWERLEKSEHERE
LALRTELIRQEKLEQLARRFDRKAAMRETWLSENQRLVSQDNFGFDLQAVEAATKKHEAI
ETDIGAYEERVQAVLSVAKELEAENYHDIKRVTARKDNVLRLWEYLLELLKARRIRLEMN
LGLQRVFQEMLYIMDWMDEMKMLLLSQDYGKHLLGVEDLLQKHALVEADIAIQADRVKAV
NNNAQKLAIDAEGYKPCDPQVIRDRVAHMEFCYAELSQLAAERRARLEESRRLWKFFWEM
AEEEGWIREKEQILSSEDCGKDLTGTVRLLSQHRAFEDEMIGRAGHLQQTIKQGEELVAA
DHFGADKIRERIQDIQEQWAALERVSAIRKARLEEACNLHQFQADADDIDAWMLDVLRIV
SSADVGHDEFSTQALVKKHKDVAEEIASYRPVIDALHEQSKTLPREQTGSEEVQGRLAGI
EERYREVAELTRLRKQALQDALALYKMFSEADACEVWIDEKEQWLNSMEIPEKLEDLEVV
QHRFESLEPEMNNQASRVAVVNQIARQLIHSGHPSENEIKAQQDKLNTRWSQFRDLVDLK
KDSLNSALGVQNYHLECNETKSWIREKTKVIESTQELGNDLAGVMALQRKLTGMERDLTA
IEDKLGELGKEGERLAAEHPDQAQGIMGRLGEITGVWDEMKGTLKNREESLGEASKLQQF
LRELDDFQSWLSKTQTAIASEDMPNTLAEAEKLLAQHEGIKNEIRNYEADYQKMRDMGEM
VTQDQTDAQYMFLRQRLQALDTGWNELHKMWENRQNLLSQSHAHQLFLRDTKQAEAFLNN
QEYVLAHTEMPTTLEGAEGAIKKQEDFMTTMDANEEKINAVVDTGRRLVSDKNINFDRIQ
EKVDSIDERHKNNRLAASELLCKLKDNRDLQKFLQDCQELSLWINEKMLTAQDMSYDEAR
NLHSKWLKHQAFMAELQSNKEWLDKIEKDGMQLIAEKPETEAMVKEKLAALHKMWDDLES
TTQTKAKCLFDANKAELFTQSCADLDKWLVGVDGQIQSDDYGKDLTSVNILLKKQQMLES
QVEVRQKEVEELQSQAQVLSLEGKDTDEVDGQRRIVEKKFQQLLDPLKKRKGNLMASREI
HQFNRDVEDEILWVEERMPLATSTDHGNNLQTVQLLIKKNQTLQKEIQGHQPRCDDIFER
SQQVLKDDDNSPSGEGIRQRLADLRHLWAQILEETGKRHGRLEEAHKAQQYYFDAAEAEA
WMSEQELYMMSEEKAKDEQSSVAMLKKHQILEQAVEDYAETVHQLSKTSRGLTAAGHPES
ERIGMRQSQVDKLYAGLKDLSEERRGKLDERFRLFQLNREVDDLEQWIAEREVVAGSHEL
GQDYEHVTMLQERFREFARDTGNIGQERVDTVNQLADELINSGHADAATIAEWKDGLNEA
WADLLELIDTRTQILAASFELHKFYHDAKEILNRILDKHKKLPEELGRDQNTVETLQRMH
TTFEHDIQALGTQVRTLQEDAVRLQSAYAGDKADDIQKREGEVLEAWRTLLEACEGRRVR
LLDTGDKFRFFSMVRDLMLWMEDVIRLIEAQEKPRDVSSVELLMNNHQGIKAEIDARNDS
FTNCIELGKSLLARKHYALEEIKEKLLQLTDKRKDMIDKWEDRWEWLRLVLEVHQFGRDA
GVAESWLLGQEPYLSSREMGQNVDEVEKLIKRHEAFEKSAATWEERFSALERLTTMELLE
VRRQQEEEERRRNPPPAETQTDSASPQQREGEKVSLNGLPSDQDSPRDNGEGSDIVNGVA
ESSPGGSPSAARKGKPSQAATLPAKSQDSTPANQLEGILHRKHEWEGHNKKASSRSWHNV
YCVINNREMGFYKDIKSASQGIPYHNEIPISLKDAACEIALDYKKKKHVFKLKATDGNEY
LFQAKDDEEMNSWMQAISSAASSDKTEITPSSHSTPTSSRAQTLPASVALATESSPGKRE
KDKEKRFSLFSKKK
NT seq
6705 nt
NT seq
+upstream
nt +downstream
nt
atgcgtatccactgcctggagaacgtggacaaggccctgcagttcctcaaggagcagagg
gtccacctagagaacatgggctcccacgacatcgtcgacggaaaccaccgtctcaccctc
ggcctcatctggaccatcatcctccgcttccagatccaggacatcagagtggagacggag
gataacaaggagaagaagtcggctaaagatgccctgctgctctggtgccagatgaagacc
gcaggatatcccaatgtaaacattcacaatttcagcaccagttggagggatggcatggcc
ttcaacgccatcctccacaaacacagacctgacctgatagactttgacaagctgaaaaag
tcaaatgcccaccacaacctgcagaatgccttcaacctggcagagcaacacctgggcctc
cacaagctactggacgtagaggatatcagtgtggaccaccctgatgagaagtccatcatc
acctatgttgtgacctactaccactacttctccaagatgaaggccctgaaggtggagggc
aaacgtattgggaaggtgctggacaatgccattgagaccgataacatgattcagaaatat
gagagtctggcctctgacctcctggaatggattgaacagaccatcatcatcctcaacaac
cgcaggtttgccaactccctagtgggagtgcagcaacagctccaggccttcaacacctac
cgtactgtcgaaaagccgcccaagttcactgagaagggcaacctggaggttctcctcttc
accatccagagcaagatgagggccaacaatcagaaggtctacatcccacgggacggcaaa
ctcatctcagacatcaacaaggcctgggagaggctggagaagtcagagcatgagagggag
ctggcgctgaggacggagctgattcgtcaggagaaactggagcagctggcccgccgcttt
gaccgcaaggccgccatgagagagacctggctgagtgagaaccaacggctcgtctcacag
gacaactttggtttcgacctgcaggcagtggaggccgccaccaagaagcacgaggccatc
gagacggacatcggcgcctacgaggagcgtgtgcaggctgtgctctccgtggccaaggag
ctggaggcagagaactaccacgacatcaagcgcgtgacagcgaggaaggacaacgtgctg
cgtctgtgggagtacctgctggaacttctgaaggcccggcgcatccggctggagatgaac
ctgggcctgcagagggtcttccaggagatgctttacatcatggactggatggacgagatg
aagatgctgctgctgtcccaggactatgggaaacacctgctgggagtggaggacctgctg
cagaagcacgctctggtggaggctgatatcgccatccaggccgaccgcgtcaaagccgtc
aacaacaacgctcagaagctcgccattgatgcagagggctacaagccctgtgacccccag
gtgatccgggaccgagtggcccacatggagttctgttacgcagagctgagccagctggcc
gccgagcgccgcgcccgcctggaggagtcccgacgcctctggaagttcttctgggagatg
gccgaggaggagggctggatccgggagaaagagcagatcctgtcctcggaggactgcggc
aaggacctgacgggcaccgtgcgcctgctgagccagcaccgcgccttcgaggatgagatg
attggccgtgctggccacctgcagcagaccatcaaacagggagaggagctggtggccgcc
gaccacttcggagctgacaagatccgtgagcgcatccaggacatccaggagcagtgggcg
gccttggaaagggtgtctgccatcaggaaggcccggctggaggaggcctgcaacctgcac
cagttccaggctgacgccgatgacatcgacgcctggatgctggatgttctccgcattgtg
tccagtgccgacgtgggtcacgacgagttctccacccaggctctggtcaagaagcacaag
gacgtggccgaggagatcgccagctaccgaccagtcattgacgccctgcacgagcagtcc
aaaaccctacccagggaacagactggctcagaggaagtgcaggggcgcctggcgggcatc
gaggagcgctatagggaggtggctgagctgacccggctgaggaagcaggccctgcaggat
gccctggccctctacaagatgttcagcgaggcggacgcctgtgaggtgtggatcgatgag
aaggagcagtggctcaacagtatggagataccagagaaactggaggatcttgaagtggtt
cagcacaggtttgagagtctggagccagagatgaacaaccaagcttcccgcgttgctgtg
gtgaaccagattgctaggcaactcatccacagtggtcaccccagtgaaaatgagatcaaa
gcccaacaggacaaactcaacaccagatggagccagttccgtgacctagttgacctgaag
aaagactccctcaactctgctctgggtgtgcagaactaccacctggagtgcaacgaaacc
aagtcgtggatccgtgagaagaccaaggtgatcgagtccacccaggagctgggcaacgac
ctggccggggtcatggccctgcagcgcaaactcactggcatggagcgcgacctgaccgcc
atcgaggacaagctgggagaactggggaaggagggggagcgcctggcagccgagcacccc
gaccaggcccagggcatcatgggtcgtctgggggagatcacaggggtgtgggacgagatg
aagggcaccctgaagaaccgcgaggagtccctgggtgaggccagcaagctgcagcagttc
ctccgggagctggatgacttccagtcatggctgtccaagacccagacggccatcgcttca
gaagacatgcccaacacactggccgaggccgagaagctgctggcgcagcacgagggcatc
aagaacgagatccgcaactatgaggcggactaccagaagatgagggacatgggcgagatg
gtgacccaggaccagacggacgcccagtacatgttcctgaggcagaggctgcaggccctg
gacacaggctggaacgagctgcacaagatgtgggagaaccgtcagaacctgctgtcccag
tcccatgcccaccagctgttcctcagggacaccaagcaggctgaggccttcctcaacaac
caggagtatgtgctggcccatactgagatgcccacgactctggagggggcggagggagcc
attaagaagcaggaggacttcatgaccaccatggacgccaatgaggagaagatcaacgcc
gtggtggacaccggacgcagactggtcagtgacaaaaacataaactttgaccgcatccag
gagaaagtggactctatcgatgagagacataagaataaccgcttggcggccagtgagctc
ctctgtaagctgaaggataacagagacctacagaagttccttcaggactgccaagagctg
tccctgtggatcaatgagaagatgctcacggctcaggacatgtcgtatgacgaagccagg
aacctccacagcaaatggctcaaacaccaggccttcatggccgagctgcagtccaacaag
gagtggctggacaagatcgagaaggatgggatgcagctgatagctgagaagccggagacc
gaggccatggtgaaggaaaagctggcagcactccataagatgtgggatgacctcgagtcc
accacccagaccaaggccaagtgtctgtttgacgccaacaaggccgagctgttcacccag
agctgtgccgacctggacaagtggctggtgggagtggatggacagatccaatcagacgac
tacggcaaagatctgaccagcgtcaacatcctgctcaaaaaacaacagatgctggagagc
caggtggaggtgcgtcagaaggaggtggaggagctgcaaagccaggcccaggtcctcagc
ctggaggggaaggacacagacgaggtggacggccagcgccgcatcgtggagaagaagttc
cagcagctgctggacccactgaagaagaggaagggaaacctcatggcctcccgcgagatc
caccagttcaacagagacgtggaggacgagatcctctgggttgaagagagaatgccactg
gcaacatctacagaccacggaaacaacctgcaaacagtccagttactcatcaagaaaaac
cagaccctgcagaaggagatccagggccaccagccgcgctgtgatgacatctttgagcgg
agtcagcaggtgctgaaggatgacgacaacagccccagcggcgaggggatccgccagcgg
ctggccgacctgcggcacctgtgggcccagatcctggaggagacgggcaaacgccatgga
cgcctggaggaggcccacaaggcccagcagtactactttgatgctgccgaggccgaggcc
tggatgagcgagcaggagctctacatgatgtcagaggagaaagccaaggatgagcagagc
tccgtggccatgctgaagaagcaccagatcctggagcaggctgtggaggactacgctgag
actgtccaccagctctccaagaccagcaggggcctgacggccgccggacacccagaaagt
gagcggatcggcatgcgtcagtcccaggtggataagctatatgcagggctcaaggacctg
tcggaggagaggagggggaagctggacgagaggttccgtctttttcagctcaacagggag
gtggatgacctggagcagtggatcgctgaaagggaggtggtggctgggtcacatgagctg
ggacaggactacgaacatgtcacgatgctgcaggagcgtttccgtgagtttgctcgtgac
acgggcaacatcggtcaagagcgtgtggacactgtcaaccagctggcggacgagctcatc
aactcgggccacgctgatgcggctaccatcgcagagtggaaagacgggctgaatgaggcg
tgggccgacctgctggagctgatcgacacacgtacgcagatcctggcggcgtccttcgag
ctgcacaagttctaccacgacgccaaggagatcctcaaccgcatcctggacaaacacaag
aagctgcctgaggagctgggccgagaccagaacacagtggagaccctgcagaggatgcac
accaccttcgaacacgacatccaggccctggggacacaggtgaggacgttgcaggaggat
gctgtgcgcctgcagtctgcctatgccggagacaaggctgatgacatccaaaagagagag
ggtgaggtgttggaggcctggaggaccctgctggaggcctgtgaaggccgcagggtcaga
ctgcttgacaccggcgacaagttccgtttcttcagcatggtccgagacctcatgctctgg
atggaggacgtcatccgcctaattgaggctcaggagaagcccagggacgtgtcgtctgtg
gagctcctgatgaacaaccaccagggcatcaaggctgagatcgacgcccgtaacgacagc
ttcaccaactgcatcgagctgggcaagtccctgttggcacggaaacactacgcattagag
gagatcaaagagaagttactacagttgacggacaagaggaaagacatgattgacaagtgg
gaggacagatgggagtggcttagattggttctggaggtgcaccagtttggtagggacgcg
ggtgtggccgagtcgtggctgctgggacaggagccgtacctgtccagcagggagatgggt
cagaatgtggacgaggtggagaaactcatcaagagacacgaggcctttgagaaatcagct
gccacctgggaagagcggttctcagcgctggaacggctgactacgatggaattactggaa
gtgagaagacagcaagaggaggaggagaggaggagaaatcccccacctgcagagacccag
acggactctgcatcgccacagcagagggagggtgagaaagtgtctctgaacggactgcca
tcggaccaggactccccacgggacaatggggagggaagtgacattgtaaatggggtggcg
gaatccagcccaggcgggtcgcccagtgcagcacgcaagggcaagcccagccaggctgcc
acgctcccggccaagtcccaggactcaaccccagccaaccagttggaaggcatcctgcac
cgcaaacatgagtgggagggtcacaacaagaaggcatccagcagatcctggcacaatgtg
tattgtgtgatcaacaaccgggaaatgggcttctacaaagacattaagagtgccagccag
ggcatcccctatcacaacgagatccccatcagcctgaaggatgctgcgtgtgagatcgcc
ctcgactacaagaagaagaagcatgtgttcaaactgaaagctacagatgggaatgagtat
ctcttccaagccaaagatgacgaggagatgaactcgtggatgcaggccatctccagcgct
gcgtcctctgataaaacagagattacccccagcagccatagcacccccacctccagccga
gcccagaccttgcccgcctctgtcgccctggcaaccgaatccagcccaggcaagcgcgag
aaggacaaagaaaagcgcttcagccttttcagcaaaaaaaagtag
DBGET
integrated database retrieval system
