Coregonus clupeaformis (lake whitefish): 121571818
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Entry
121571818 CDS
T08357
Name
(RefSeq) spectrin beta chain, non-erythrocytic 1
KO
K06115
spectrin beta, non-erythrocytic 1/4/5
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
121571818
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
cclu04812
]
121571818
Cytoskeleton proteins [BR:
cclu04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Cross-linking proteins
121571818
Intermediate filaments
Intermediate filament-binding proteins
121571818
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Spectrin
CH
PH_9
PH
PH_11
SOS1_NGEF_PH
PH_13
CH_2
CAMSAP_CH
Motif
Other DBs
NCBI-GeneID:
121571818
NCBI-ProteinID:
XP_045078230
LinkDB
All DBs
Position
1:complement(64640701..64697025)
Genome browser
AA seq
2234 aa
AA seq
DB search
MRIHCLENVDKALQFLKEQRVHLENMGSHDIVDGNHRLTLGLIWTIILRFQIQDIRVETE
DNKEKKSAKDALLLWCQMKTAGYPNVNIHNFSTSWRDGMAFNAILHKHRPDLIDFDKLKK
SNAHHNLQNAFNLAEQHLGLHKLLDVEDISVDHPDEKSIITYVVTYYHYFSKMKALKVEG
KRIGKVLDNAIETDNMIQKYESLASDLLEWIEQTIIILNNRRFANSLVGVQQQLQAFNTY
RTVEKPPKFTEKGNLEVLLFTIQSKMRANNQKVYIPRDGKLISDINKAWERLEKSEHERE
LALRTELIRQEKLEQLARRFDRKAAMRETWLSENQRLVSQDNFGFDLQAVEAATKKHEAI
ETDIGAYEERVQAVLSVAKELEAENYHDIKRVTARKDNVLRLWEYLLELLKARRIRLEMN
LGLQRVFQEMLYIMDWMDEMKMLLLSQDYGKHLLGVEDLLQKHALVEADIAIQADRVKAV
NNNAQKLAIDAEGYKPCDPQVIRDRVAHMEFCYAELSQLAAERRARLEESRRLWKFFWEM
AEEEGWIREKEQILSSEDCGKDLTGTVRLLSQHRAFEDEMIGRAGHLQQTIKQGEELVAA
DHFGADKIRERIQDIQEQWAALERVSAIRKARLEEACNLHQFQADADDIDAWMLDVLRIV
SSADVGHDEFSTQALVKKHKDVAEEIASYRPVIDALHEQSKTLPREQTGSEEVQGRLAGI
EERYREVAELTRLRKQALQDALALYKMFSEADACEVWIDEKEQWLNSMEIPEKLEDLEVV
QHRFESLEPEMNNQASRVAVVNQIARQLIHSGHPSENEIKAQQDKLNTRWSQFRDLVDLK
KDSLNSALGVQNYHLECNETKSWIREKTKVIESTQELGNDLAGVMALQRKLTGMERDLTA
IEDKLGELGKEGERLAAEHPDQAQGIMGRLGEITGVWDEMKGTLKNREESLGEASKLQQF
LRELDDFQSWLSKTQTAIASEDMPNTLAEAEKLLAQHEGIKNEIRNYEADYQKMRDMGEM
VTQDQTDAQYMFLRQRLQALDTGWNELHKMWENRQNLLSQSHAHQLFLRDTKQAEAFLNN
QEYVLAHTEMPTTLEGAEGAIKKQEDFMTTMDANEEKINAVVDTGRRLVSDKNINFDRIQ
EKVDSIDERHKNNRLAASELLCKLKDNRDLQKFLQDCQELSLWINEKMLTAQDMSYDEAR
NLHSKWLKHQAFMAELQSNKEWLDKIEKDGMQLIAEKPETEAMVKEKLAALHKMWDDLES
TTQTKAKCLFDANKAELFTQSCADLDKWLVGVDGQIQSDDYGKDLTSVNILLKKQQMLES
QVEVRQKEVEELQSQAQVLSLEGKDTDEVDGQRRIVEKKFQQLLDPLKKRKGNLMASREI
HQFNRDVEDEILWVEERMPLATSTDHGNNLQTVQLLIKKNQTLQKEIQGHQPRCDDIFER
SQQVLKDDDNSPSGEGIRQRLADLRHLWAQILEETGKRHGRLEEAHKAQQYYFDAAEAEA
WMSEQELYMMSEEKAKDEQSSVAMLKKHQILEQAVEDYAETVHQLSKTSRGLTAAGHPES
ERIGMRQSQVDKLYAGLKDLSEERRGKLDERFRLFQLNREVDDLEQWIAEREVVAGSHEL
GQDYEHVTMLQERFREFARDTGNIGQERVDTVNQLADELINSGHADAATIAEWKDGLNEA
WADLLELIDTRTQILAASFELHKFYHDAKEILNRILDKHKKLPEELGRDQNTVETLQRMH
TTFEHDIQALGTQVRTLQEDAVRLQSAYAGDKADDIQKREGEVLEAWRTLLEACEGRRVR
LLDTGDKFRFFSMVRDLMLWMEDVIRLIEAQEKPRDVSSVELLMNNHQGIKAEIDARNDS
FTNCIELGKSLLARKHYALEEIKEKLLQLTDKRKDMIDKWEDRWEWLRLVLEVHQFGRDA
GVAESWLLGQEPYLSSREMGQNVDEVEKLIKRHEAFEKSAATWEERFSALERLTTMELLE
VRRQQEEEERRRNPPPAETQTDSASPQQREGEKVSLNGLPSDQDSPRDNGEGSDIVNGVA
ESSPGGSPSAARKGKPSQAATLPAKSQDSTPANQLEGILHRKHEWEGHNKKASSRSWHNV
YCVINNREMGFYKDIKSASQGIPYHNEIPISLKDAACEIALDYKKKKHVFKLKATDGNEY
LFQAKDDEEMNSWMQAISSAASSDKTEITPSSHSTPTSSRAQTLPASVALATESSPGKRE
KDKEKRFSLFSKKK
NT seq
6705 nt
NT seq
+upstream
nt +downstream
nt
atgcgtatccactgcctggagaacgtggacaaggccctgcagttcctcaaggagcagagg
gtccacctagagaacatgggctcccacgacatcgtcgacggaaaccaccgtctcaccctc
ggcctcatctggaccatcatcctccgcttccagatccaggacatcagagtggagacggag
gataacaaggagaagaagtcggctaaagatgccctgctgctctggtgccagatgaagacc
gcaggatatcccaatgtaaacattcacaatttcagcaccagttggagggatggcatggcc
ttcaacgccatcctccacaaacacagacctgacctgatagactttgacaagctgaaaaag
tcaaatgcccaccacaacctgcagaatgccttcaacctggcagagcaacacctgggcctc
cacaagctactggacgtagaggatatcagtgtggaccaccctgatgagaagtccatcatc
acctatgttgtgacctactaccactacttctccaagatgaaggccctgaaggtggagggc
aaacgtattgggaaggtgctggacaatgccattgagaccgataacatgattcagaaatat
gagagtctggcctctgacctcctggaatggattgaacagaccatcatcatcctcaacaac
cgcaggtttgccaactccctagtgggagtgcagcaacagctccaggccttcaacacctac
cgtactgtcgaaaagccgcccaagttcactgagaagggcaacctggaggttctcctcttc
accatccagagcaagatgagggccaacaatcagaaggtctacatcccacgggacggcaaa
ctcatctcagacatcaacaaggcctgggagaggctggagaagtcagagcatgagagggag
ctggcgctgaggacggagctgattcgtcaggagaaactggagcagctggcccgccgcttt
gaccgcaaggccgccatgagagagacctggctgagtgagaaccaacggctcgtctcacag
gacaactttggtttcgacctgcaggcagtggaggccgccaccaagaagcacgaggccatc
gagacggacatcggcgcctacgaggagcgtgtgcaggctgtgctctccgtggccaaggag
ctggaggcagagaactaccacgacatcaagcgcgtgacagcgaggaaggacaacgtgctg
cgtctgtgggagtacctgctggaacttctgaaggcccggcgcatccggctggagatgaac
ctgggcctgcagagggtcttccaggagatgctttacatcatggactggatggacgagatg
aagatgctgctgctgtcccaggactatgggaaacacctgctgggagtggaggacctgctg
cagaagcacgctctggtggaggctgatatcgccatccaggccgaccgcgtcaaagccgtc
aacaacaacgctcagaagctcgccattgatgcagagggctacaagccctgtgacccccag
gtgatccgggaccgagtggcccacatggagttctgttacgcagagctgagccagctggcc
gccgagcgccgcgcccgcctggaggagtcccgacgcctctggaagttcttctgggagatg
gccgaggaggagggctggatccgggagaaagagcagatcctgtcctcggaggactgcggc
aaggacctgacgggcaccgtgcgcctgctgagccagcaccgcgccttcgaggatgagatg
attggccgtgctggccacctgcagcagaccatcaaacagggagaggagctggtggccgcc
gaccacttcggagctgacaagatccgtgagcgcatccaggacatccaggagcagtgggcg
gccttggaaagggtgtctgccatcaggaaggcccggctggaggaggcctgcaacctgcac
cagttccaggctgacgccgatgacatcgacgcctggatgctggatgttctccgcattgtg
tccagtgccgacgtgggtcacgacgagttctccacccaggctctggtcaagaagcacaag
gacgtggccgaggagatcgccagctaccgaccagtcattgacgccctgcacgagcagtcc
aaaaccctacccagggaacagactggctcagaggaagtgcaggggcgcctggcgggcatc
gaggagcgctatagggaggtggctgagctgacccggctgaggaagcaggccctgcaggat
gccctggccctctacaagatgttcagcgaggcggacgcctgtgaggtgtggatcgatgag
aaggagcagtggctcaacagtatggagataccagagaaactggaggatcttgaagtggtt
cagcacaggtttgagagtctggagccagagatgaacaaccaagcttcccgcgttgctgtg
gtgaaccagattgctaggcaactcatccacagtggtcaccccagtgaaaatgagatcaaa
gcccaacaggacaaactcaacaccagatggagccagttccgtgacctagttgacctgaag
aaagactccctcaactctgctctgggtgtgcagaactaccacctggagtgcaacgaaacc
aagtcgtggatccgtgagaagaccaaggtgatcgagtccacccaggagctgggcaacgac
ctggccggggtcatggccctgcagcgcaaactcactggcatggagcgcgacctgaccgcc
atcgaggacaagctgggagaactggggaaggagggggagcgcctggcagccgagcacccc
gaccaggcccagggcatcatgggtcgtctgggggagatcacaggggtgtgggacgagatg
aagggcaccctgaagaaccgcgaggagtccctgggtgaggccagcaagctgcagcagttc
ctccgggagctggatgacttccagtcatggctgtccaagacccagacggccatcgcttca
gaagacatgcccaacacactggccgaggccgagaagctgctggcgcagcacgagggcatc
aagaacgagatccgcaactatgaggcggactaccagaagatgagggacatgggcgagatg
gtgacccaggaccagacggacgcccagtacatgttcctgaggcagaggctgcaggccctg
gacacaggctggaacgagctgcacaagatgtgggagaaccgtcagaacctgctgtcccag
tcccatgcccaccagctgttcctcagggacaccaagcaggctgaggccttcctcaacaac
caggagtatgtgctggcccatactgagatgcccacgactctggagggggcggagggagcc
attaagaagcaggaggacttcatgaccaccatggacgccaatgaggagaagatcaacgcc
gtggtggacaccggacgcagactggtcagtgacaaaaacataaactttgaccgcatccag
gagaaagtggactctatcgatgagagacataagaataaccgcttggcggccagtgagctc
ctctgtaagctgaaggataacagagacctacagaagttccttcaggactgccaagagctg
tccctgtggatcaatgagaagatgctcacggctcaggacatgtcgtatgacgaagccagg
aacctccacagcaaatggctcaaacaccaggccttcatggccgagctgcagtccaacaag
gagtggctggacaagatcgagaaggatgggatgcagctgatagctgagaagccggagacc
gaggccatggtgaaggaaaagctggcagcactccataagatgtgggatgacctcgagtcc
accacccagaccaaggccaagtgtctgtttgacgccaacaaggccgagctgttcacccag
agctgtgccgacctggacaagtggctggtgggagtggatggacagatccaatcagacgac
tacggcaaagatctgaccagcgtcaacatcctgctcaaaaaacaacagatgctggagagc
caggtggaggtgcgtcagaaggaggtggaggagctgcaaagccaggcccaggtcctcagc
ctggaggggaaggacacagacgaggtggacggccagcgccgcatcgtggagaagaagttc
cagcagctgctggacccactgaagaagaggaagggaaacctcatggcctcccgcgagatc
caccagttcaacagagacgtggaggacgagatcctctgggttgaagagagaatgccactg
gcaacatctacagaccacggaaacaacctgcaaacagtccagttactcatcaagaaaaac
cagaccctgcagaaggagatccagggccaccagccgcgctgtgatgacatctttgagcgg
agtcagcaggtgctgaaggatgacgacaacagccccagcggcgaggggatccgccagcgg
ctggccgacctgcggcacctgtgggcccagatcctggaggagacgggcaaacgccatgga
cgcctggaggaggcccacaaggcccagcagtactactttgatgctgccgaggccgaggcc
tggatgagcgagcaggagctctacatgatgtcagaggagaaagccaaggatgagcagagc
tccgtggccatgctgaagaagcaccagatcctggagcaggctgtggaggactacgctgag
actgtccaccagctctccaagaccagcaggggcctgacggccgccggacacccagaaagt
gagcggatcggcatgcgtcagtcccaggtggataagctatatgcagggctcaaggacctg
tcggaggagaggagggggaagctggacgagaggttccgtctttttcagctcaacagggag
gtggatgacctggagcagtggatcgctgaaagggaggtggtggctgggtcacatgagctg
ggacaggactacgaacatgtcacgatgctgcaggagcgtttccgtgagtttgctcgtgac
acgggcaacatcggtcaagagcgtgtggacactgtcaaccagctggcggacgagctcatc
aactcgggccacgctgatgcggctaccatcgcagagtggaaagacgggctgaatgaggcg
tgggccgacctgctggagctgatcgacacacgtacgcagatcctggcggcgtccttcgag
ctgcacaagttctaccacgacgccaaggagatcctcaaccgcatcctggacaaacacaag
aagctgcctgaggagctgggccgagaccagaacacagtggagaccctgcagaggatgcac
accaccttcgaacacgacatccaggccctggggacacaggtgaggacgttgcaggaggat
gctgtgcgcctgcagtctgcctatgccggagacaaggctgatgacatccaaaagagagag
ggtgaggtgttggaggcctggaggaccctgctggaggcctgtgaaggccgcagggtcaga
ctgcttgacaccggcgacaagttccgtttcttcagcatggtccgagacctcatgctctgg
atggaggacgtcatccgcctaattgaggctcaggagaagcccagggacgtgtcgtctgtg
gagctcctgatgaacaaccaccagggcatcaaggctgagatcgacgcccgtaacgacagc
ttcaccaactgcatcgagctgggcaagtccctgttggcacggaaacactacgcattagag
gagatcaaagagaagttactacagttgacggacaagaggaaagacatgattgacaagtgg
gaggacagatgggagtggcttagattggttctggaggtgcaccagtttggtagggacgcg
ggtgtggccgagtcgtggctgctgggacaggagccgtacctgtccagcagggagatgggt
cagaatgtggacgaggtggagaaactcatcaagagacacgaggcctttgagaaatcagct
gccacctgggaagagcggttctcagcgctggaacggctgactacgatggaattactggaa
gtgagaagacagcaagaggaggaggagaggaggagaaatcccccacctgcagagacccag
acggactctgcatcgccacagcagagggagggtgagaaagtgtctctgaacggactgcca
tcggaccaggactccccacgggacaatggggagggaagtgacattgtaaatggggtggcg
gaatccagcccaggcgggtcgcccagtgcagcacgcaagggcaagcccagccaggctgcc
acgctcccggccaagtcccaggactcaaccccagccaaccagttggaaggcatcctgcac
cgcaaacatgagtgggagggtcacaacaagaaggcatccagcagatcctggcacaatgtg
tattgtgtgatcaacaaccgggaaatgggcttctacaaagacattaagagtgccagccag
ggcatcccctatcacaacgagatccccatcagcctgaaggatgctgcgtgtgagatcgcc
ctcgactacaagaagaagaagcatgtgttcaaactgaaagctacagatgggaatgagtat
ctcttccaagccaaagatgacgaggagatgaactcgtggatgcaggccatctccagcgct
gcgtcctctgataaaacagagattacccccagcagccatagcacccccacctccagccga
gcccagaccttgcccgcctctgtcgccctggcaaccgaatccagcccaggcaagcgcgag
aaggacaaagaaaagcgcttcagccttttcagcaaaaaaaagtag
DBGET
integrated database retrieval system
