Coregonus clupeaformis (lake whitefish): 121571921
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Entry
121571921 CDS
T08357
Name
(RefSeq) thyroid hormone receptor beta isoform X3
KO
K08362
thyroid hormone receptor beta
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04080
Neuroactive ligand-receptor interaction
cclu04081
Hormone signaling
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
121571921
04081 Hormone signaling
121571921
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cclu03000
]
121571921
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
cclu03310
]
121571921
Transcription factors [BR:
cclu03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
121571921
Nuclear receptors [BR:
cclu03310
]
1. Thyroid hormone like
1A. Thyroid hormone receptor (THR)
121571921
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
zf-C4
Hormone_recep
CpXC
Motif
Other DBs
NCBI-GeneID:
121571921
NCBI-ProteinID:
XP_041739653
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Position
8:51694863..51874241
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AA seq
480 aa
AA seq
DB search
MNYCMPDMYEMPHGVGGGYPLQGGGEYCMYGGDGPGGYCEPQPMNPIHPPCMEQAWPPSQ
PYACSYPGPNPVFKSEYCNMEVPLSHYHHQPDYYSEGKSDFSHMQWMQEVNKKGYIPSYL
DKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLNPTYACKYEAKCIIDKVTRNQC
QECRFKKCITVGMATDLVLDDSKRLAKRKLIEENRERRRKEELQKTVWDRPEPSQEEWDL
IRMVTEAHMSTNAQGNHWKQKRKFLPEDIGQAPVINAPEGSKVDIEAFSQFTKIITPAIT
RVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQL
KNGGLGVVSDAIFDLGVSLSSFHLDDSEVALLQAVILLSSDRPGLTSVERIERCQEEFLL
AFEHYINYRKHKVAQFWPKLLMKVTDLRMIGACHASRFLHMKVECPNELFPPLFLEVFED
NT seq
1443 nt
NT seq
+upstream
nt +downstream
nt
atgaactactgcatgcctgacatgtatgagatgcctcatggcgtgggcggtggctacccg
ttgcagggcggtggggaatactgcatgtatggaggtgatggtcccgggggatactgtgag
ccccagcccatgaaccccatccaccctccctgcatggagcaggcttggcccccaagccag
ccctatgcctgctcctacccaggacccaaccctgtgttcaaaagtgaatactgcaacatg
gaagtgcctctcagccactaccaccaccagcctgactactattctgaggggaagtctgac
ttctcccacatgcagtggatgcaagaggttaacaagaaagggtacatccctagttacctg
gacaaggacgagttatgtgtggtatgtggggacaaagctacaggatatcactatcgctgt
atcacctgtgaaggttgcaagggtttcttccggcggacgatccagaagaacctgaacccg
acgtacgcgtgtaagtacgaggcgaagtgcatcatcgataaggtgaccaggaaccagtgc
caggaatgtcgcttcaagaagtgcatcactgtcggcatggcaacagacttggtgctggac
gacagcaagcggctcgccaagcggaagttgatcgaggagaaccgtgagcggcggcggaag
gaggagctccagaagacggtgtgggaccggcctgagccgtctcaggaggagtgggacctg
atccgcatggtcaccgaggcccacatgtcaactaacgcccagggcaaccactggaaacag
aaacggaagttcttgcccgaggacattggtcaagcaccggtcataaatgcacctgaaggg
agcaaagtggacatagaagccttcagtcagtttacaaaaattatcacccccgccattacc
cgagtggtggactttgccaaaaagctgcctatgttctgtgagctgccttgtgaagaccag
attatcctattgaaaggctgctgcatggagatcatgtctttacgggcggccgttcgctac
gaccccgagagtgagacgctgacgcttaacggagagatggccgtgacccgcggccagctg
aagaacggaggcctgggtgtggtgtcggacgccatctttgatttgggcgtgtcgctgtcg
tcgttccacctggacgactctgaggtcgctctgctacaggccgtcatcctcctgtcctcc
gaccgtccggggctgaccagcgtggagcgcattgagcgctgtcaggaggagttccttctg
gcctttgaacattacatcaactaccgtaaacacaaggtggcgcaattctggcccaagctg
ctgatgaaggtgacggacctgcggatgatcggggcgtgccacgcctcccgcttcctgcat
atgaaggtggagtgccccaacgaacttttccccccactcttcctggaggtctttgaggac
tga
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