Coregonus clupeaformis (lake whitefish): 121571957
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Entry
121571957 CDS
T08357
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 1-like
KO
K14401
cleavage and polyadenylation specificity factor subunit 1
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
121571957
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cclu03021
]
121571957
03019 Messenger RNA biogenesis [BR:
cclu03019
]
121571957
Transcription machinery [BR:
cclu03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
121571957
Messenger RNA biogenesis [BR:
cclu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
121571957
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CPSF_A
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
UspB
Motif
Other DBs
NCBI-GeneID:
121571957
NCBI-ProteinID:
XP_041739698
LinkDB
All DBs
Position
8:complement(36228992..36255069)
Genome browser
AA seq
1479 aa
AA seq
DB search
MYAVYRQAHSPTAIEFSVYCNFISNEEKNLVVAGTSQLYVYRIIHDVENASKTDKSPDVK
SRKEKLEQVACFSLFGNVMSMASVQLVGANRDALLLSFKDAKLSVVEYDPGTHDLKTLSL
HFFEEPELRDGFVQNLHIPMVRVDPENRCAVMLVYGTQLVVLPFRKDTLTDEQEGVVEGP
KSSFLPSYIIDVRELDEKLLNIVDMKFLHGYYEPTLLILYEPNQTWPGRVAVRQDTCSIV
AISLNIMQKVHPVIWSLSNLPFDCTQVMPVPKPIGGVVVFAVNSLLYLNQSVPPYGVSLN
TQTTGTTAFPLRIQEEVKITLDCSQSTFIGSDKMVISLKGGEIYVLTLITDGMRSVRAFH
FDKAAASVLTTCMMTMEPGYLFLGSRLGNSLLLKYTEKYQEKPEKPPVEEDKEKEEETDE
EKQEEPPSKKKRNDSSTNLTAGKNQLPDEVDEIEVYGSEVASGTQLATYSFEVCDSILNI
GPCAGASMGEPAFLSEEFQTNPEPDLEIVVCSGFGKNGGLSVLQRSIRPQVVTTFELPGC
HDMWTVISNEVKEMKEKEKKKDKPPAAEGEGETPEEEEAEEKTEPAPVEGDKKKHGFLIL
SREDSTMILQTGQEIMELDTSGFATQGPTVFAGNIGDNKYIIQVSPMGIRLLEGVTQLHF
IPVDLGSPIVQCSVADPYVVIMTADGVVTMFILKTDSYMGKTHRLALQKPQMAAQPRVIT
LCTFRDVSGMFTTENKQTCHTKDQDTMFKSQSESETIIQDLSNTVDDEEEMLYGDCNPAG
ITPTKDESHPGYRTPSSGALGGASEGRSGRAEPTHWCMMVRENGVMEIYQLPDWRLVFLV
KNFPVGQRVLVDSSAGQSAAQGEGKKEEVTRQGEIPLVKEVALVSLGNNHCRPYLLVHVE
QELLIYEAFPYDQQQAQSNLKVRFKKMPHNINFREKKSKVKKDKKAEGQGGPSEEGPAVV
KGRVARFRYFEDISGYSGVFICGPSPHWMLVTSRGAMRLHPMTIDGPIESFSPFHNINCP
KGFLYFNKQGELRISVLPTYLSYDAPWPVRKIPLRCTVHYVSYHVESKVYAVCTSVKDPC
TRIPRMTGEEKEFETIDRDERYIPPQQENFSIQLISPVSWEAIPNTRIDLEEWEHVTCMK
TVALRSQETVSGLKGYIAAGTCLMQGEEVTCRGRILILDVIEVVPEPGQPLTKNKFKVLY
EKEQKGPVTALCHCSGYLVSAIGQKIFLWSLKDNDLTGMAFIDTQLYIHQMFSIKNFILA
ADVMKSISLLRYQPESKTLSLISRDAKPLEVYSVEFMVDNNQLGFLVSDRDQNLSVYMYL
PEAKESFGGMRLLRRADFNVGANVNAFWRMPCRGALDTATKKTLAWDNKHITWFATLDGG
IGLLLPMQEKTYRRLLMLQNALTTMLPHHAGLNPKAFRMLHADRRQLQNAVRNILDGELL
NKYLYLSTMERSELAKKIGTTSDIILDDLLEVDRVTAHF
NT seq
4440 nt
NT seq
+upstream
nt +downstream
nt
atgtatgccgtgtaccgccaagcccactcccccaccgccatcgagttttctgtctactgc
aacttcatctccaacgaggagaagaacctggtcgtcgctggaacatctcagctttacgtc
tacaggatcattcacgatgtggagaatgcttcaaagacagacaaatcaccagatgtcaag
agtcgtaaggagaagcttgagcaggtggcttgtttctccctgttcggtaacgtcatgtcc
atggcctctgttcagctagtaggagccaacagagatgctctcctgctcagcttcaaagat
gctaagctgtccgtggtggagtatgatccaggaacacatgatctgaagactctctcgctt
cacttctttgaggagccagagctgagggatgggtttgtccagaacctgcacatccccatg
gtccgtgtggacccagagaaccgctgtgctgtgatgctggtgtatggcacccagctggtg
gtgctgccattcagaaaggacacgcttactgacgaacaggagggagtagtggaagggccc
aagtccagctttcttcccagctacatcatcgatgtccgtgagctggatgagaagcttctg
aacattgtcgatatgaagttcctccatggatactatgaacccacactgctcatcctgtat
gagcccaaccagacgtggcctgggcgtgtagcagtgagacaggacacctgcagtatcgta
gccatctctctcaacattatgcagaaggttcaccctgtcatctggtccctcagcaacctg
ccctttgattgcacacaggtcatgcctgtgcccaagccaattggtggtgtggtggtgttt
gctgtcaactcccttttatacctcaaccagagtgttcctccatatggagtgtcactcaac
acacagaccactgggaccaccgccttccccctacgtatacaggaggaggtgaagatcaca
ctagattgttcccagtccaccttcatcggctctgacaagatggtcatctctctaaaggga
ggagagatctatgtgttgaccctgatcactgatggcatgagaagtgtccgagccttccat
tttgacaaggctgctgccagcgtcctcaccacatgtatgatgaccatggagcctgggtat
ctgttcctggggtcccggctgggaaacagcctcttgctaaaatacacagagaagtaccag
gagaaaccagagaagccaccagtggaggaggacaaagagaaggaagaggagaccgatgag
gagaagcaggaggaacctcccagtaaaaagaagagaaatgattcctctaccaacttgaca
gctggtaagaaccaactgcctgatgaggtggatgaaattgaggtgtacgggagcgaagtg
gcatctggcactcaattggccacctactcctttgaggtatgtgacagcatattgaacatc
ggaccttgtgctggtgcatccatgggggagccggccttcctctctgaagagttccagacc
aacccagagcctgacctggagatagtggtgtgttctggctttgggaaaaacgggggtctg
tccgtgcttcagagaagcatccgaccccaggtggtcaccacctttgagctgccaggttgc
catgacatgtggactgtcatctccaatgaggtgaaggagatgaaggagaaagaaaagaag
aaggacaagcctcctgcagcggagggggagggtgagacccctgaggaagaggaggcggag
gagaagactgagcctgcgccagtggagggcgacaagaaaaaacatggcttcctgattctc
agtagagaggactccaccatgatcctgcagactggtcaggagatcatggagctggacacc
agtggtttcgccacgcagggacccactgtgttcgctgggaacatcggagacaacaaatac
atcatccaggtctccccaatgggcatacggctattggaaggagtgacccagctgcacttc
atcccggtggacttgggttctcccatagtgcagtgctccgtagcagacccctatgtggtc
atcatgacggcagacggagtggtcaccatgttcatcctgaagaccgactcctacatgggc
aagacccaccgcctggccctgcagaaaccacagatggctgctcaaccccgtgtgattacg
ctgtgtacgttccgtgacgtcagcgggatgttcaccacagagaacaagcagacctgtcac
accaaggatcaagacaccatgttcaagagccaatcagagtctgagaccatcatacaggac
ctcagtaacacagtggatgatgaggaggagatgttatatggagactgtaacccagcaggc
atcacccccaccaaggacgagtcccaccccggctaccgcaccccctcctctggggccctg
ggtggggcgtccgaggggaggtcgggacgagctgaacccacacactggtgcatgatggtc
cgcgagaacggtgtcatggagatctaccagctacctgactggagactggtgttcctggtc
aaaaacttccctgttggccagagagtgttggttgacagctccgccggccaatcagcagcc
cagggggaggggaaaaaggaggaagtgacacgacagggagagatcccattggtcaaagag
gtggccctggtgtcactcggcaacaaccactgcagaccctacctcctggtccatgttgaa
caggagcttctgatctatgaagcgttcccgtatgaccagcagcaggctcagagcaacctg
aaggtccgcttcaagaagatgccccacaacatcaacttccgggagaagaagtcgaaggtg
aagaaagataagaaggctgagggtcagggtggtcccagcgaagaggggccagcggtggtc
aaaggtcgtgtggccaggttcagatactttgaggacatctccggttactctggggtgttc
atctgtggcccctcccctcactggatgctggtgacatcacggggcgcgatgaggctccac
cccatgacgatcgacggaccaatcgagtccttctcccccttccacaacatcaactgtccc
aaaggcttcctctacttcaacaagcagggcgagctgaggatcagtgttctacccacatac
ctgtcgtatgacgccccctggccagtcaggaagattccgctgagatgcactgttcactat
gtgtcctaccatgtagagtccaaggtgtatgcagtgtgcaccagtgtgaaggacccctgc
actcgcattcccagaatgaccggagaggagaaggagtttgagaccatagacagagacgag
cgctacattccgccccagcaggagaatttctccattcagctcatatctcctgtcagctgg
gaggccatccctaacacacgaattgacctggaggagtgggagcatgtgacgtgtatgaag
acggtggcgttgaggagtcaggagacggtgtctgggctgaagggatacatagctgctggt
acttgtctcatgcagggagaagaggtcacctgtaggggccggatcctgatcctggatgtg
attgaggtggtcccggaacctggtcagcccctgacgaaaaacaaattcaaggttctgtat
gagaaagagcagaagggaccggtcacagctctgtgtcactgcagcggatacctagtctct
gccatcggacagaagatctttctgtggagtctgaaggacaacgacttgacaggcatggcc
ttcatcgacacccagctttacatccaccagatgtttagcatcaagaactttatcctggcg
gctgacgtcatgaagagcatctctctgctcagataccagcctgagagtaagacgctgtcg
ctaattagcagggacgccaagcctctggaggtctacagtgtagagtttatggtggataac
aaccagctgggattcctggtgtccgaccgagaccagaatctatcggtgtacatgtatctg
cctgaagctaaggagagtttcgggggcatgcgtctgctgaggagggcagacttcaacgtg
ggagctaatgtcaatgccttctggaggatgccgtgtcgaggggcactggacacagccacc
aagaagaccctggcctgggacaacaagcacatcacatggtttgccactctggatggaggc
atcgggctgctgctacccatgcaggagaagacctaccgcagattgctgatgttgcagaat
gctctcaccaccatgctgccacaccacgcagggttaaaccccaaggctttcaggatgttg
catgctgaccggcggcagctccagaacgcggtgcggaacattctggatggagagctgctc
aacaagtacctgtacctcagcaccatggagcgcagtgagctggccaaaaagatcggcacc
acctctgatataatcttggatgatctccttgaggttgacagggtgactgctcatttctga
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integrated database retrieval system
