Coregonus clupeaformis (lake whitefish): 121571983
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Entry
121571983 CDS
T08357
Name
(RefSeq) E3 ubiquitin-protein ligase RING2-A isoform X1
KO
K10695
E3 ubiquitin-protein ligase RNF1/2 [EC:
2.3.2.27
]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
121571983
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cclu04121
]
121571983
03036 Chromosome and associated proteins [BR:
cclu03036
]
121571983
Enzymes [BR:
cclu01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
121571983
Ubiquitin system [BR:
cclu04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
121571983
Chromosome and associated proteins [BR:
cclu03036
]
Eukaryotic type
Histone modification proteins
Polycomb repressive complex (PRC) and associated proteins
Canonical PRC1 (PRC1.2/1.4)
121571983
Noncanonical PRC1 (PRC1.1)
121571983
Noncanonical PRC1 (PRC1.3/1.5)
121571983
Noncanonical PRC1 (PRC1.6)
121571983
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RAWUL
zf-C3HC4_2
zf-C3HC4
zf-RING_2
zf-C3HC4_3
zf-RING_UBOX
zf-Nse
zf-C3HC4_4
DUF4653
zf-RING_6
zf-RING_4
zf-RING_5
RING_XB3-XBAT31
zf-rbx1
zf-UDP
TRAF3_RING
zf-C3HC4_5
Sina_RING
Motif
Other DBs
NCBI-GeneID:
121571983
NCBI-ProteinID:
XP_041739749
LinkDB
All DBs
Position
8:56399051..56403590
Genome browser
AA seq
404 aa
AA seq
DB search
MATPVNVQNPSKTWELSLYELHRSPQEAIMDGTEIAVSPRSLHSELMCPICLDMLKNTMT
TKECLHRFCSDCIVTALRSGNKECPTCRKKLVSRRSLRRDSNFDALISKIYPSRDEYEAH
QDRVLERLNRLHNKQALSSSIEEGLRMQALHRPPRAQRVRKPAQESDNTTFSGGEDNGEA
RSHLSHDSAPSLAPLPPSHTPSEAGPSRNPKRLRVSDGSGPEVDGGSPTPPLRRHKEGPG
LEIELVFRPHPLLVNTQDYSQTRYVKTTANATVDHLSKYLALRIALEDKQGDSQSDAGTE
KGKEGGAKGEEVAAGEGASLKNISEKQYTIYITTSGGQFSTLNGSLTLELVNEKYWKVRK
PLELYYAPTKDQQPQPSQPKSPQPKEGEEPSLFSLYHSLSLTAY
NT seq
1215 nt
NT seq
+upstream
nt +downstream
nt
atggcgactccagtcaacgtccaaaaccccagtaagacgtgggagctgagcttgtatgag
ctgcacaggagcccacaggaggcgatcatggacggcacagagatagcggtgtcccccagg
agcctccacagtgagctgatgtgccccatctgtctggacatgcttaagaacaccatgacc
actaaggagtgcctccaccgcttctgctccgactgcatcgtcactgcactccgatcaggg
aacaaggaatgccccacgtgccgaaagaagctggtgtcgagacgctcgttgcggcgcgac
tccaatttcgacgcccttatctccaagatctaccccagccgggacgagtacgaggcccac
caggaccgggtgctggagagactcaaccggctgcacaataagcaggcgctcagctccagc
atcgaggaggggctgcgcatgcaggcgcttcacagaccccccagagcccagcgagtgcgc
aaaccggcgcaggagagcgacaacacaaccttcagcggcggcgaggacaacggggaagca
cgctcacacctctcccatgactccgctccctccctcgcgccactccccccgagccacacg
ccctccgaagccgggcccagccggaaccccaagcggctcagggtgtcggacgggtcgggc
ccggaggtggatgggggcagccccacgcccccgctccgccgccacaaagagggccccggc
ttggagatagagcttgtgttccgcccacaccccctgctggtcaacacacaggactacagc
cagaccagatatgtgaagaccacagccaatgcaacagtggaccacctgtctaagtacctg
gctctgcgtatcgctttggaggacaaacaaggagacagccaatcagatgcagggacggag
aaagggaaagaggggggggctaaaggagaggaagtagcagcaggagaaggggccagcctg
aagaatatcagtgagaaacaatacaccatctacatcacaacgtcagggggccagttctct
actctgaacggctccctgactctggagctggtgaatgagaagtactggaaggtcagaaag
cctctggagctctactatgcacccaccaaggaccaacagcctcaaccatcccagccaaag
tccccacagcccaaagagggtgaggagccctccctcttcagcctttatcactccctgtct
ctgaccgcctactga
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