Coregonus clupeaformis (lake whitefish): 121572217
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Entry
121572217 CDS
T08357
Name
(RefSeq) homeobox-containing protein 1 isoform X1
KO
K24885
homeobox-containing protein 1
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cclu03000
]
121572217
Transcription factors [BR:
cclu03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain POU
121572217
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
HNF-1_N
Homeodomain
Homeobox_KN
AbiJ_NTD3
HTH_3
Motif
Other DBs
NCBI-GeneID:
121572217
NCBI-ProteinID:
XP_041740089
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Position
8:62793398..62817251
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AA seq
525 aa
AA seq
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MRQWCLPAAAPRTEPLPTGRLSPPLSDVRMECCEVEPRYTIEQIDLLQRLRLSGMTKPQI
VQALGSLERLDPDYCNDTHTANPTTNATPTTASAPAPSSSSSSSSSSSLSLASATTQTPG
MDGASLSPSNSYEASPPPLYPPGVGVQRSFSYDIMAEEDWDLEEKVEEYMRRDSNLVKEE
IKTFLNNRRISQAIVGQVTGISQSYISQWLLQQGLEMSDSKRRSFYRWYLLERNNPGNNH
GLRWSESQHGPAGLGLGGLGQGLGQNPGSGPRAARGGDRDVMVTGNAATCTTATSAVTAS
TTWGRQRELLMHLLPWYTAAAAAQPGATLSMRSLVKEEPDWRMGVSPGERGGVVGGPLRL
RRGSRFTWRKECQSIMESFFMENQYPDEAKREEIANACNSVIQKPGCKLSEFERVTALKV
YNWFANRRKEMKRRANIEAAILESHGIEVPSPSCHSNGEELEPHDYAEQVNQRFLEREEI
SSRKDLDPQDPSSLAAVNVLPPPSPAPQVLEHKADESKRETVDEE
NT seq
1578 nt
NT seq
+upstream
nt +downstream
nt
atgcgacagtggtgcctcccggctgcggcaccgcgaaccgaacctctgcccacagggcgc
ctctcacccccgctatcagatgtcaggatggagtgttgtgaggtggagccacgctacacc
atcgagcagatcgacctcctccagcgcctccgtctctcagggatgaccaagccacagatc
gtccaggccttgggatccctagagcgactagaccccgactactgcaatgacacccacaca
gccaaccccacaaccaacgccacccctaccacagcctccgccccggccccctcctcctcc
tcttcctcctcttcctcttcctccctctccctggcctctgccaccacgcagacacccggg
atggatggcgcctccctgtcgcctagcaacagctacgaggcctcgcccccgccgctttac
cccccgggggtcggagttcagaggtcattcagctatgacatcatggcggaggaggactgg
gaccttgaggagaaggtggaggagtacatgaggagggacagtaacctggtgaaggaggaa
atcaaaaccttcctcaacaaccgcaggatctcccaggccatcgtgggacaggtcacaggt
atcagtcagagttatatctcccagtggttgctgcagcagggcttggagatgagcgactcc
aaacgcagatctttctaccgctggtacctgctggagaggaacaacccaggtaacaaccac
gggctgaggtggagtgaaagccagcacggcccggcgggtctggggctcggtggtctcggt
caggggttgggccaaaacccgggctctggacccagggcagccaggggaggggacagagac
gtcatggtgacgggcaacgccgctacgtgcaccacggccacttcagccgtgaccgcctcc
accacctggggcagacagagagagctgctgatgcacctgctgccatggtacactgcagcc
gctgccgcacagccaggtgctaccctgtcgatgcgctccctggtgaaggaggagcctgat
tggaggatgggggtcagtcccggggagaggggcggggtggtgggcggtcctcttaggctg
cggaggggaagcagattcacctggaggaaggagtgccagtcaatcatggagagtttcttc
atggagaaccagtaccctgacgaggcaaagagagaggagatcgctaatgcctgcaactcc
gtcatccagaaacctggatgcaagctgtctgagtttgagcgtgtcacggctctgaaggtg
tacaactggttcgccaaccgccggaaagagatgaagaggcgggctaatatagaggcggcc
atcttggagagtcatggtatcgaggttcccagcccgagctgtcactccaacggggaggag
ctggagccacatgactacgcagagcaagtgaatcaacgattcttagagcgggaagagatt
tcatccaggaaggaccttgatccacaagacccctcctcattggctgccgtcaatgtcctt
ccccctcctagccccgcccctcaggtcctagaacacaaagctgacgaatcgaaaagggag
actgtggatgaggagtga
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