Coregonus clupeaformis (lake whitefish): 121572239
Help
Entry
121572239 CDS
T08357
Name
(RefSeq) spliceosome RNA helicase DDX39B
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03013
Nucleocytoplasmic transport
cclu03015
mRNA surveillance pathway
cclu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121572239
09122 Translation
03013 Nucleocytoplasmic transport
121572239
03015 mRNA surveillance pathway
121572239
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cclu03019
]
121572239
03041 Spliceosome [BR:
cclu03041
]
121572239
Enzymes [BR:
cclu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
121572239
Messenger RNA biogenesis [BR:
cclu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
121572239
Spliceosome [BR:
cclu03041
]
Complex C
Other components
EJC/TREX
121572239
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
121572239
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
121572239
NCBI-ProteinID:
XP_041740126
LinkDB
All DBs
Position
8:complement(59412024..59439225)
Genome browser
AA seq
430 aa
AA seq
DB search
MTEQDVENELLDYDEDDVDAVGDLSGGDILAIKKERVKGSYVSIHSSGFRDFLLKPELLR
AIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLV
MCHTRELAFQISKEYERFSKYMPTIKVAVFFGGLSIKKDGEVLKKECPHVVVGTPGRILA
LIRNKTLNLRNIKHFILDECDKMLEQLDMRRDVQEIFRLTPHEKQVMMFSATLSKEIRPV
CRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQ
RCVALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNI
AFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDETDARTLNDVQDRFEVNISELPDEI
DISSYIEPTR
NT seq
1293 nt
NT seq
+upstream
nt +downstream
nt
atgactgagcaggacgtggagaatgagctcttggactatgatgaggatgatgtggacgcg
gtgggagatctgtcaggaggggatattctggccattaagaaggagcgtgtgaagggctcc
tatgtgtccatccattcctctggttttagagacttcctgttgaagccagagctgctgagg
gctatagtggactgtggctttgagcatccctctgaggttcagcatgagtgcatcccccag
gcgatcctgggtatggatgtgctgtgccaggccaagtctggtatgggcaagacggcagtg
tttgttctggccacactacagcagctggagcctgtcactggacaggtgtcagtgctggtg
atgtgccacacccgagagctggcatttcagatcagcaaggagtatgagagattctccaag
tacatgccaactatcaaggtggcagtgttctttggtggcctgtctataaagaaggacggg
gaggtgttgaagaaggagtgtccccatgtggtggtggggacgccagggcgaatcctggcc
ctgatccgcaacaagaccctcaacctgcgaaacatcaaacacttcatcctggacgagtgt
gacaagatgctggagcaacttgacatgcgccgagacgtccaggagatattccgtctgacc
ccccatgagaaacaggtcatgatgttcagcgccaccctgagcaaagagatccgccccgtc
tgccgaaagttcatgcaagatccgatggaaatctttgttgatgatgagaccaagctgact
ctccacgggctgcagcagtactatgtcaaactgaaggacaacgagaagaacaggaagctc
tttgatctcctcgacgtgctggagttcaaccaggtggtgatctttgtgaagtcagtgcag
cgctgtgtggctctggcccagctgttggttgagcagaacttcccagctatcgccatccac
cgcgggatgccccaggaggaacgtctctctcgttaccaacagtttaaagacttccagaga
cgtatcctggtggccaccaacctgtttggaagagggatggacatcgagagggtcaacatc
gccttcaactacgacatgccagaagactctgacacttacctgcacagagttgccagggcg
ggcaggtttggcaccaaaggcctggccatcacgtttgtgtctgatgagacggatgcccgc
acccttaacgacgtccaggaccgattcgaggtgaacatcagcgagctgcccgacgagatc
gacatctcatcttacattgaaccaacccggtaa
DBGET
integrated database retrieval system
