Coregonus clupeaformis (lake whitefish): 121572252
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Entry
121572252 CDS
T08357
Name
(RefSeq) E3 ubiquitin-protein ligase TRIM71-like
KO
K12035
tripartite motif-containing protein 71 [EC:
2.3.2.27
]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cclu03019
]
121572252
04121 Ubiquitin system [BR:
cclu04121
]
121572252
Enzymes [BR:
cclu01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
121572252
Messenger RNA biogenesis [BR:
cclu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
121572252
Ubiquitin system [BR:
cclu04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
121572252
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NHL
DUF4934
DUF5128
Filamin
zf-B_box
SGL
ANCHR-like_BBOX
zf-B_box_Trim66
zf-RING_5
zf-RING_2
CRLF3_N
Baculo_PEP_C
Motif
Other DBs
NCBI-GeneID:
121572252
NCBI-ProteinID:
XP_041740156
LinkDB
All DBs
Position
8:complement(58560054..58607041)
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AA seq
835 aa
AA seq
DB search
MASFSDSDLQTCPLCKELCGSSSAPISCNSSTSSSSSHSSSSSSRRLHVLPCLHAFCRQC
LEGQRSHRDPLKLRCPTCDQKVSVSEAGVDSLPSSNFLLSNLLDVVVSSEEQLQLVQNKN
GHRWVGGGSIPGFQHPHGGLLLPHRLGEPQCSSCDEGNPASSHCLDCQEYLCDNCIRAHQ
RVRLTKDHFVERLAESLHHASLVKASPVGGGGGGVGGGVGLTLTQSFQSNFSLLSLFQDR
MSFCQHHDNKVFLFFCETCSVPICRECSVGRHLGHSFVYLQDAVQDSRAITIQLLADAQQ
GRRAVQLSMETVQAIAEQVEIKAKVVQTEVKNMVRRHMKALEERESQLLWKVEKIRQLKA
KSLYLQVEKLHQNLTKLDSTIAAVNQVLDEGCYLDVLLARERMLTQVQELKSLRGLLQPQ
EDDRFLFTPPDQALYIAIQSMGLISSGAFAPVTKAHGEGLKTALRGKTASFTVIGYDHDG
EPCLSGGDAVSAVVMAAAEGNLSAADVCDHQNGSYTVSYLPKAEGEDLVSVLVCNQHIMD
SPFKVLVKSGRRYGALGSAVSAFGSEGEGDGQLCRPWGISVDKEGYVVVADRSNNRVQIF
KPCGAFHHKFGSLGSRPGQFDRPAGVACDSQRRIIVTDKDNHRVQVFTFDGQFMLKFGEK
GTKNGQFNYPWDVAVNSAGKILVSDTRNHRIQLFGPDGSFINKYGFEGALWKHFDSPRGV
AFNHEDHLVVTDFNNHRLLVIRPDCQSARFLGSEGTGNGKFLRPQGIAVDQENRIIVADS
RNHRVQVFEPNGNFLCKFGTHGSGFGQMDRPSGVAVTPDGVIVVVDFGNNRILKF
NT seq
2508 nt
NT seq
+upstream
nt +downstream
nt
atggcttcattctcagactccgacctgcagacctgtcctctctgcaaggagctctgcggc
tcctcctctgctcccatctcctgcaactcctccacctcctcctcctcctctcactcgtcg
tcctcctcctcccggcgcctccatgtcctcccctgcctgcacgccttctgcaggcagtgt
ctggagggccagcgcagtcatagggaccctctcaaactccgctgccccacctgcgaccag
aaggtctccgtctccgaggccggagtggactcgctcccttcctccaacttcctcttgagt
aaccttctggacgtggtcgtgagctcagaggagcagctccaactcgtccagaataagaac
ggccaccggtgggtcggcgggggctccatacccgggttccagcacccccacggcgggctc
ctcctcccgcaccgcctgggagagccccagtgcagctcctgtgacgaggggaacccggcc
agctcccactgcctggactgccaggagtacctgtgtgataactgcatccgagcacaccag
agggtccggctgaccaaggaccacttcgtggagaggctggctgagagcctgcaccatgcg
agcctagtcaaggccagccccgtcggaggtggaggagggggggtaggaggaggtgtgggg
ttgaccctgacccagtctttccagtccaacttctccctgctgtctttgttccaggataga
atgagcttctgtcagcaccacgacaacaaggtgtttctgtttttctgtgagacgtgctcg
gtgcctatctgtagggagtgtagtgtgggtagacacttgggccacagcttcgtctatcta
caggacgctgtccaggactccagagccatcaccatccagctactggccgacgcacagcaa
ggaagacgggctgtacagttgagtatggagacggtccaggcaatagcagagcaggttgag
atcaaggccaaggtggttcagacagaggtgaagaacatggtccgcagacacatgaaagcc
ctggaggagagagagagtcagctactctggaaggttgagaagatccgccaactgaaagcc
aagtccctgtacctgcaggtagagaagctgcatcagaacctgaccaagctggacagcacc
atcgcagcagtcaaccaggtgctggacgagggctgttacctggacgtgctgctggccaga
gagcgtatgctgacccaggtccaggagctgaagtctctcagagggttgctgcagccacag
gaggacgaccgtttcctgttcacccctccagaccaggccctgtacatagccatccagtcc
atggggctgatcagtagtggagcgttcgctcctgtcaccaaagctcacggcgagggctta
aagactgcgctccgtggcaagaccgcctccttcaccgtgattggctacgaccacgacggg
gaaccctgcctctcgggcggtgacgcggtgtcagcggtggtgatggcagcggcggaaggt
aacttgtccgcggcggatgtgtgtgaccaccagaacgggtcatacacggtcagctacctg
cccaaggctgagggagaagatctggtgtcagttctggtctgtaaccagcacatcatggac
agccccttcaaggtgctggtgaagtctgggcgacgctacggggctctgggttccgcggtg
tctgcgtttggtagcgagggggagggggacggtcagctgtgtcgtccatgggggatcagt
gtggataaagagggatacgtggtggtggccgaccgcagtaacaaccgcgtacagatcttc
aagccgtgcggtgccttccaccacaagttcggctccctgggctctcgccccggtcagttt
gatcgtccagcgggcgtggcgtgcgacagccaacggcggatcatcgtaacggacaaagac
aaccaccgcgtgcaggtgttcaccttcgacggacagtttatgctcaagttcggcgagaag
ggcactaagaacggtcagttcaactacccctgggacgtggcagtgaactctgcggggaag
atcttggtctctgacaccaggaaccaccgcatccagctctttggccctgatggctcgttc
atcaacaagtacggctttgagggcgccctgtggaaacactttgactcaccacgcggcgtc
gcttttaaccacgaggaccacctggtcgtcaccgacttcaacaaccaccgtctgctggtg
attcggccagattgccagtctgcccggttcctgggctcagagggaaccggtaacgggaag
ttcctgcgtccccagggcatagcggtggatcaggagaaccggatcatcgttgccgactcg
agaaaccaccgggtgcaagtgttcgagcccaacgggaacttcttatgcaaatttggcacc
catgggagtggcttcggacagatggaccgcccctccggtgttgctgtgacacctgacgga
gtcatcgtggtcgtcgactttggaaacaaccgcatcctcaagttctga
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