Coregonus clupeaformis (lake whitefish): 121572301
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Entry
121572301 CDS
T08357
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121572301
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cclu03041
]
121572301
03009 Ribosome biogenesis [BR:
cclu03009
]
121572301
Enzymes [BR:
cclu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
121572301
Spliceosome [BR:
cclu03041
]
Complex A
U2 snRNP components
U2 related factors
121572301
Complex B
121572301
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
121572301
Ribosome biogenesis [BR:
cclu03009
]
Eukaryotic type
90S particles
Helicases
121572301
BRITE hierarchy
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
AAA_25
nSTAND3
SRP54
Flavi_DEAD
AAA_29
Atrophin-1
Motif
Other DBs
NCBI-GeneID:
121572301
NCBI-ProteinID:
XP_041740274
LinkDB
All DBs
Position
22:3430966..3442260
Genome browser
AA seq
761 aa
AA seq
DB search
MSKRHRLDLGDDYTNKKRSDGKDRDRDRDRDERSKDRDRDRDRDRDRDRDRDVKPSVVPP
NPMMAGGGMLPLKQTAMQQQINPFTNLPHTPRYYEILKKRLQLPVWEYKERFNDILARHQ
SFVLVGETGSGKTTQIPQWCVDMVKGLGGPKKAVACTQPRRVAAMSVAQRVADEMDVMLG
QEVGYSIRFEDCSSAKTILKYMTDGMLLREAMNDPLLERYGVIILDEAHERTLATDILMG
VLKEVVRQRSDLKVIVMSATLDAGKFQVYFDSCPLLTIPGRTHPVEIFYTPEPERDYLEA
AIRTVVQIHMCEEEEGDCLLFLTGQEEIDEACKRIKREIDDLGPEVGDIKVIPLYSTLPP
QQQQRIFEAAPPRKPSGAIGRKVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVE
SLLVTAISKASAQQRAGRAGRTRPGKTFRLYTEKAYKTEMQDNTYPEILRSNLGSVVLQL
KKLGIDDLVHFDFMDPPAPETLMRALELLNYLAALNDDGDLTELGSMMAEFPLDPQLAKM
VIASCEFNCSNEILSITAMLSVPQCFVRPTEAKKAADESKMRFAHIDGDHLTLLNVYHAF
KQNHESTQWCYDNFVNYRSLMSADNVRSQLSRIMDRFNLPRRSTEFTSRDYYINIRRALV
TGFFMQVAHLERTGHYLTVKDNQVVQLHPSTVLDHKPEWVLYNEFVLTTKNYIRTCSDIK
PEWLVKVAPQYYEMGNFPQCEAKRQLERIVAKLQTKEYSQY
NT seq
2286 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaaagacaccgtttagatttaggcgacgactacaccaataaaaagagatctgat
gggaaagaccgagatcgcgacagggaccgcgacgagcgctctaaagacagggacagggac
cgcgacagagatcgtgaccgggaccgagatagggacgtgaagccctccgtcgtgcccccc
aaccccatgatggccgggggaggcatgcttcctctcaagcagacagccatgcagcagcag
atcaacccgttcacaaacctgccccacacgccacgctactatgagatcctgaagaagagg
ctgcagctacctgtgtgggagtacaaggagcgcttcaacgacatcctggcacgccaccag
agcttcgtgcttgttggagagacgggctccgggaaaaccacacagatcccccaatggtgt
gtggacatggtgaagggcttgggcggccccaagaaggcggtggcctgtacccagcccagg
agggtggcagctatgagcgtggcccagagggtggccgatgagatggatgtcatgctgggc
caagaggtgggctactccatacgattcgaggactgcagctccgccaagaccatactgaag
tatatgacagacggtatgttgcttcgggaagccatgaacgaccccctgctggagcggtat
ggcgtgatcatcctggatgaggcccacgagagaacgctggccacggacatcctaatggga
gtcttgaaggaggtggtccgacagaggtcagacctcaaggtgattgtgatgagcgccacg
ttagacgccgggaagttccaggtgtactttgacagctgtccgctgctgaccattcccggg
cgcacacaccctgtggagatcttctacacccctgagccagagcgggactacctggaagcc
gccatccgcacggtcgttcagatccacatgtgtgaggaagaggagggggactgtctgctg
ttcctcaccggacaagaggaaattgacgaggcttgtaaacggatcaaacgggagatcgac
gacttgggacctgaagtcggagacatcaaagtaattccgctatattccacactgcctccc
cagcagcaacaaagaatctttgaggccgcaccccccaggaagcccagcggtgcgatagga
agaaaggttgtggtttcgacaaacattgctgagacatcccttaccatcgacggagtggtg
tttgtgatcgatcccggttttgccaagcaaaaggtgtacaaccctcgtatcagggtggag
tctctcctggtcacggcgatcagcaaagcctcggcgcagcagagggctggtcgcgccggc
aggacacggccagggaagactttccgcctttacactgagaaagcctacaagaccgagatg
caggacaacacgtatcccgagattctccggtccaacttgggttctgtcgtgttgcagttg
aagaagctgggtatcgatgacctggtgcactttgacttcatggacccaccagccccagag
accctgatgcgggcgctggagctgctcaactacctggcggcactcaacgacgatggcgac
ctgacagagctgggctccatgatggccgagttcccgctggacccccagctggccaagatg
gtgatcgccagctgcgagttcaactgctccaacgagatcctctccatcaccgccatgctg
tcagtcccgcagtgtttcgtccgccccaccgaggctaagaaggcggcggacgagtccaag
atgcggttcgcccacatcgacggagaccacctgacgctcctcaacgtctaccacgccttc
aaacaaaaccacgagtctacacagtggtgctacgacaactttgtgaactaccgttcgctg
atgtcggccgacaacgtgcgctcgcagctgtcccggatcatggaccgcttcaacctgccc
cgccgcagcacagagttcaccagcagagactactacatcaacatccgccgagcgctcgtc
acaggctttttcatgcaggtggctcatttggagcgcacgggccattacctcacggtcaag
gacaaccaggtggtccagctacacccgtctaccgtcctggaccacaagccagagtgggtg
ctctacaatgagtttgtgctcaccaccaagaactacattcgcacctgctcggatatcaaa
ccggaatggctggtgaaggttgctcctcagtactacgaaatgggcaacttcccacagtgt
gaagccaagaggcagttggagcgaatcgtggccaaactccagaccaaggagtattcccaa
tactga
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