Coregonus clupeaformis (lake whitefish): 121572333
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Entry
121572333 CDS
T08357
Name
(RefSeq) spectrin beta chain, non-erythrocytic 1-like isoform X1
KO
K06115
spectrin beta, non-erythrocytic 1/4/5
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04517
IgSF CAM signaling
cclu04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
121572333
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
121572333
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
cclu04812
]
121572333
Cytoskeleton proteins [BR:
cclu04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Cross-linking proteins
121572333
Intermediate filaments
Intermediate filament-binding proteins
121572333
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Spectrin
CH
PH_9
PH
CAMSAP_CH
SOS1_NGEF_PH
PH_11
Motif
Other DBs
NCBI-GeneID:
121572333
NCBI-ProteinID:
XP_045082437
LinkDB
All DBs
Position
17
Genome browser
AA seq
2350 aa
AA seq
DB search
MTTVAAEYDHIEITQQYSSSDTVNNRWDDEWDNENSSARLFERSRIKALADEREAVQKKT
FTKWVNSHLSRVSCRITDLYRDLSDGRMLIKLLEVLSGEKLPKPTRGRMRIHCLENVDKA
LQFLKEQRVHLENMGSHDIVDGNHRLTLGLIWTIILRFQIQDISVETDGDNKEKRSAKDA
LLLWCQMKTAGYPNVNIHNFSTSWRDGMAFNALIHKHRPDLIDFDKLKKSNAHHNLQNAF
NLAEQHLGLTKLLDPEDISVDHPDEKSVITYVVTYYHYFSKMKALKVEGKRIGKVLDNAI
ETEKMIEKYESLASDLLEWIEQTIIILNNRKFANSLNGVQQQLQAFNTYRTVEKPPKFTE
KGNLEVLLFTIQSKMRANNQKVYMPREGKLISDINKTWERLEKAEHERELALRTELIRQE
KLEQLARRFDRKAAMRETWLSENQRLVSQDNFGFDLPAVDAATKKHEAIETDITAYEERV
QAVVSVAKELEAEKYHDMKRIAARKDNVIRLWEYLLELLKARRQRLEMNLGLQRVFQEML
YIMDWMDEMKMMLLSQDYGKHLLGVEDLLQKHALVEADIGIQADRVKAVNNNAQKFAIDG
DVYKPCDPQVIRDRVAHMEFCYQELTQLAAERRARLEESRRLWKFFWEMAEEEGWIREKE
QILSSDESGKDLTAAVRLLSQHRALEDEMSGRAGHLQHTIAEGQAMTDGGHFGAAKIRER
IADLRAQWAALEELAAVRKGHLEEACALHQFQADADDADAWTLDALRIVSSGEVGHDEFS
TQALVRKHKDAAAEVASYRPVIDALHEQAAALPEEQAQSEEVKGRLAGIEERYKEVAELT
RLRKQALQDALALYKMFSEADACEVWIDEKEQWLNSMEIPEKLEDLEVIQHRFESLEPEM
NNQASRVAVVNQIARQLMHNGHPGEKDIKAQQDKLNNRWSQFRDLADQKKESLISALGVQ
NYHLDCNETKSWIREKTKVIESTQELGNDLTGVMALQRKLTGMERDLAAIEDKLGDLRSE
AERLAGEHPDQAKAITGRLAEITAVWEEMKATLRNREESLGEASKLQQFLRELDDFQSWL
SRTQTAIASEETPNTLAEAEKLLAQHEGIKNEIRNYEEDYQKMRDMGEMVTQGQTDAQYM
FLRQRLQALDTGWNELHKMWENRQNLLSQSHAYQLFLRDTKQAEAFLNNQEYMLAHTEMP
TTLEGAEGAIKKQEDFMTTMDANEDKINGVVEAGRRLASDGNINADRIQERATSIDDRHK
KNREAAVELLMRLKDNRDLQKFLQDCQELSLWINEKMLTAQDMSYDEARNLHSKWLKHQA
FMAELQSNKEWLDKIEKDGMQLVSEKPETESVVKEKLSALQKMWEELESTTQAKAQGLFD
ANKAELFTQSCADLDKWLGGLEGQIQSDDYGKDLTSVNILLKKQQILENQVEVRQREVVE
LQSQALVLSQEGKDTEEVDGQRQMVEHKFKELLDPLRKRKNFLVASREIHQFNRDVEDEI
LWVEERMPIATSTDHGHNLQTVQLLIKKNQTLQKEIQGHQPRFDDIFERSESLLMEDSLA
VEAIRQRLADLQQLWGLMIEETEKRHARLEEAHNAQKYYFDAAEAEAWMSEQELYMMSEE
KAKDEQSSVAMLKKHQIVEQSVEDYAETVHQLSKTSRGLTAAGHPESERIGMRQSQVDKL
YAGMKDLSEERRGKLDERFRLFQLNHEVDDLEQWIAEREVVAGSHELGQDYEHVTMLQER
FREFARDTGNIGQERVDAVNRLADELINAGHADAATVAEWKDGLNEAWADLLELIDTRTQ
ILAASYELHKFYHDAKEILGRILDKHKKLPEEVGRDQNTVETLQRMHTTFEHDIQALGTQ
VRQLQEDAVRLQSAYAGDKADDIQRRESEVLEAWNTLLEACNGRRVHLLDTGDKFRFFSM
VRDLMLWMEDVIRLIEAQENPRDVSSVELLMNNHQGIKAEIDARNDSFTACIELGKSLLA
RKHYASEEIKDKLLQLMDKRKDMIDKWEDRREWLRLILEVHQFGRDAGVAEAWLLGQEPY
LFGRELGQSVDEVEKLIKRHEAFEKSAATWEERFSALERLTTLELLEVRRQQEEEERMRK
PPSPEPLPTQDSPLQSGVENGLQNGLPSDQDSLQNGVDGVEIMNGVAEQNSKDPSPIPSP
TASRRGKGSLSSMLPTQNQDLPAAQLEGFLHRKHEWEGHNKKASSRSWHNVYCVINNQEM
GFYKDNKAAGQGIPYHNAIPISLMGAVCDVAMDYKKKKHVFKLRVTDGNEYLFQAKDEEE
MSTWIQAILNAGTPDKVSITPSNQSTPASNRAQTLPATVTLTTESSPVKREKDKEKDKEK
RFSLFSKKKL
NT seq
7053 nt
NT seq
+upstream
nt +downstream
nt
atgacgacagtagccgcggagtatgaccacatagagatcactcaacagtacagcagcagc
gacacggtcaacaaccgctgggatgacgagtgggacaacgagaacagctcggcccgcctg
ttcgagcgctcgcgcatcaaggccctggcagatgagcgcgaagcggtgcagaagaagacc
ttcaccaaatgggtgaactctcacctctcccgggtgtcctgccgcatcaccgacctgtac
agggacctgagtgatggacgcatgctcatcaaactgctggaggtgctgtctggggagaaa
ctgcccaagcccaccaggggacggatgcgtatccactgcctggagaatgtggacaaggcc
ctgcagttcctcaaggagcagagggtccacctggaaaacatgggctcacatgacatcgtt
gacggcaatcaccgcctcaccctgggcctcatctggaccatcattctcaggttccagatc
caggacatcagtgttgagactgatggagacaacaaggagaagagatcagcaaaggacgcc
ctgctcctctggtgccagatgaagactgctggatatccaaacgtgaacattcacaacttc
agcaccagttggcgagacggcatggctttcaacgccctcatccataagcacaggccagac
ctgattgactttgacaagctgaaaaagtccaatgcccaccacaacctgcagaatgccttc
aacctggctgagcagcatctggggcttaccaagctcctggacccagaggatatcagtgtt
gaccatcccgatgagaagtccgtcatcacatacgtggtgacatactaccactacttctcc
aaaatgaaggcgctgaaagtggaggggaaacgcattgggaaggtactggacaatgccatt
gagacagagaagatgattgagaagtacgagtctctggcctcagacctgctggagtggatc
gagcagaccatcatcatcctcaacaatcgcaagtttgccaactctttaaacggggtgcag
cagcaacttcaagccttcaacacataccgcacggtcgagaaaccccctaagtttactgag
aagggcaacctggaggtacttctgtttaccatccagagcaagatgagggccaacaatcag
aaagtctacatgcccagggagggcaaactcatctctgacattaacaagacctgggagaga
ctggagaaagcggagcatgagcgggagctggctctgaggacggagctgattcgacaggag
aaactggagcagctggctcgccgctttgaccgcaaggctgccatgagggagacctggctg
agtgagaaccagcgcctcgtctcacaggacaactttggtttcgacctcccggcggtggac
gcagccaccaagaagcatgaggccatcgagacggatattacagcgtacgaggagcgtgtg
caggccgtggtgtccgtcgccaaggagctggaggcagagaagtaccacgacatgaaacgc
atcgcagcgcgcaaggacaacgtgatccggctgtgggagtacctgctggagcttctgaag
gcgaggcgccagcgcctggagatgaacctgggtctgcagagggtcttccaggagatgctt
tacatcatggactggatggatgaaatgaagatgatgctgctgtcccaggactatgggaag
catctgctcggagtggaggatctcctgcagaaacacgccctggtggaggccgacatcggc
atccaggccgaccgagtcaaagctgtcaacaacaatgctcagaagttcgccatcgacggc
gacgtttacaagccctgtgaccctcaggtaatacgcgaccgcgtggcccacatggagttc
tgctaccaggagctgacccagctggctgccgagcgccgcgcccgcctggaggagtctcgc
cgcctctggaagttcttctgggagatggccgaggaggagggctggatccgtgagaaggag
cagatcctgtcgtcggacgagagcggcaaggacctgacggccgctgtgcgcctgctgagc
cagcaccgcgccctggaggacgagatgagcggccgtgccggtcacctgcagcacaccatc
gccgagggccaggccatgaccgatggcggccacttcggcgccgccaagatccgcgaacgc
atcgccgatctgcgggcgcagtgggcagcgttggaggagctggcggccgtgcggaagggc
catctggaggaggcgtgcgccctgcaccagttccaggcagacgcagatgacgctgacgcc
tggaccctggacgccctgcgcatcgtatccagcggcgaggtgggccatgacgagttctcc
acacaggccctggtgcgcaagcacaaggacgccgctgccgaggtggccagctatcggccg
gtgatcgacgcgctccatgagcaggcggccgccttgcctgaggagcaggcccagtcggaa
gaggtcaagggccgcctggcaggcatagaggagcgctacaaggaggtggccgagctgacc
cggttgagaaagcaggcgctgcaggacgccctggccctctacaagatgttcagcgaggcg
gacgcctgcgaggtgtggatcgatgagaaggagcagtggctcaacagcatggagatccca
gagaagctagaagacctagaggtcattcagcacaggttcgagagcctagagcctgagatg
aacaaccaggcgtcacgcgtcgctgtcgtgaaccagatcgccaggcagctgatgcataat
ggacaccccggtgagaaggacatcaaagcccagcaagataagctcaacaacagatggagc
cagttccgggatctggcggaccagaagaaagagtctctaatctcggcactgggcgtgcag
aactaccacctggactgcaacgagaccaagtcgtggatccgcgagaagacgaaggtcatc
gagtccacccaggagctaggcaacgacctgacgggtgtcatggcactgcagcgtaaactc
actggcatggagcgtgacctggctgccatcgaggacaagctgggcgacctgcgcagcgag
gccgagcggctggccggcgagcacccggaccaggccaaggccatcacgggccgcctggct
gagattaccgccgtgtgggaggagatgaaggccacgctgcgtaaccgcgaggagtccctt
ggcgaggccagcaagctgcagcagttcctgcgcgagctggatgacttccagtcgtggctg
tcgcgcacacagacagccattgcctcggaggagacgcccaacacgctggccgaggccgag
aagctgctagcgcagcacgagggcatcaagaacgagatccgcaactacgaggaagactac
cagaagatgcgcgacatgggcgagatggtgacccagggccagacggatgcccagtacatg
ttcctgaggcagcggctacaggccctggacacgggctggaacgagctgcacaagatgtgg
gagaaccggcagaacctgctatcacagtcccacgcctaccagctgttcctcagggacacc
aagcaggccgaggccttcctcaacaaccaggagtacatgctggcccatacagagatgccc
actacgcttgagggggctgaaggagccatcaagaagcaggaggacttcatgaccaccatg
gacgccaacgaagataagataaacggcgtggtggaggctggtaggcggctggcgagcgac
ggcaacatcaacgctgaccgcatacaggagagagcgacgtctattgatgacaggcataag
aagaaccgcgaggctgctgtggagctactgatgaggctgaaggataaccgggaccttcag
aagttcctacaggattgccaagagctgtccctgtggatcaacgagaagatgctcacggcc
caggacatgtcgtacgacgaggccaggaacctccacagcaaatggctcaagcatcaggcc
ttcatggccgagctgcagtccaacaaggagtggctggacaagattgagaaggatgggatg
cagctggtgtcggagaagcctgagacagagtcggtggttaaggagaagctctcagccctc
cagaagatgtgggaagagttggagtccaccacccaggccaaggcccagggcctgtttgac
gccaacaaggccgagctgttcacacaaagctgtgccgacctggacaagtggctgggtggc
ctggagggccagattcaatcggacgactacggcaaagacctgaccagcgtcaacatcctg
ctcaagaagcagcagatattggagaaccaggtggaggtccgtcagagggaggtggtggag
ctgcagagccaggcactggtcctcagccaggaagggaaggacacggaggaggtggacggc
cagagacagatggtggagcacaagttcaaagagctactggacccactgaggaagagaaag
aacttcctggtggcctcccgcgagatccaccagttcaaccgggacgtggaggacgagatt
ctttgggtcgaagagaggatgccaattgcaacctccacagatcatggtcacaacctgcag
accgttcaactgcttatcaagaaaaaccagaccttgcagaaggagatccagggacaccag
ccccggtttgacgacattttcgagcggagcgagagcctgctgatggaggacagccttgcc
gtggaggccatccgccagcgcctggccgacctgcaacagctgtggggcctgatgattgag
gagacagagaagcgtcacgcccgactggaggaggcccacaatgcccagaagtactacttt
gatgccgccgaggctgaggcctggatgagcgagcaggagttgtacatgatgtctgaggag
aaggccaaggatgagcagagctccgtagccatgctgaagaagcaccagattgtggagcag
tcggtggaggactacgctgagacagtccatcagctctccaagaccagcagaggcctgaca
gctgcaggacatccagagagtgagaggattggcatgcgtcagtctcaggtggacaagctc
tatgctggcatgaaggacctgtctgaggagaggcggggcaaactggacgagaggttccgc
ctgttccagctcaaccacgaggttgacgacttggagcagtggattgccgagcgggaggtg
gtggccggatctcatgagctgggacaggactacgagcatgtcactatgctccaggagcgc
ttccgggagtttgcccgcgacacaggcaacatcggccaggagcgtgtggatgccgtcaac
cgtctggccgacgagctgattaatgcgggccacgcagatgccgccacggtggccgagtgg
aaggacggcctcaacgaggcctgggctgacctgctggagctcatcgacacgcgtacgcag
atcctggccgcctcttacgagctacacaagttctaccacgatgccaaggagatcctgggc
cgcatcctggacaaacacaagaagcttccagaggaggtgggacgtgaccagaacacggtg
gagacactgcagcggatgcacaccacctttgagcatgacatccaggccctgggaacacag
gtgaggcagctgcaggaggatgccgtccgcctccagtcggcctacgccggcgacaaggca
gacgacatccagcggagggagagcgaggtgctggaggcctggaataccctgctggaggcc
tgcaatggccgtagggtccacctcctggacacgggcgacaaattccgcttcttcagcatg
gtgcgcgacctcatgctgtggatggaggacgtcatccgtctcatcgaagcccaggagaat
ccaagggatgtgtcctcggtggagttgttgatgaacaaccaccagggcatcaaggctgag
atcgacgcccgcaacgacagcttcaccgcctgcatcgagttgggcaagtctctgctagcc
agaaagcactatgcatcagaggagatcaaagataagttactacagttgatggacaagagg
aaagacatgattgacaagtgggaggaccgacgggagtggttaagactgattttggaagtt
caccagtttgggagggatgcaggggtggcagaggcgtggctgctgggacaggaaccatac
ctgttcggccgtgagttggggcagagcgtggacgaggtggagaaactgatcaagaggcac
gaggcgttcgagaagtcggccgccacttgggaggagcgcttctcagcgctggagaggttg
actacgttggagttattggaagtgagaagacagcaagaggaagaagagagaatgcggaaa
cccccttcgccggagcctttaccgacgcaggactcaccactgcagagtggagtagagaac
ggactgcagaacggactgccctcagaccaggattccctacagaatggcgtggacggagtt
gagatcatgaatggagtggcagagcagaactcaaaggatccgagccccattccctcgccc
acagccagccggcggggaaagggcagcctgtcctccatgttgccgacccagaaccaggat
ttgcctgcagctcagctggagggcttcctgcaccgcaagcatgagtgggagggacacaac
aagaaggcctcaagcagatcctggcataacgtgtactgcgttatcaacaatcaggaaatg
ggcttctacaaagacaacaaggctgctggtcaaggcatcccctaccacaacgcgattccg
atcagtctaatgggggctgtgtgtgatgtggccatggattacaaaaaaaagaagcatgtc
ttcaaactcagagttacggatggaaatgagtatctcttccaagccaaagatgaagaggag
atgagcacatggatccaggccattctgaatgcggggacacctgacaaggtatcgattacg
cccagcaaccagagcactccggcgtcgaaccgagcccagaccctgcccgccaccgtcacc
ctcaccaccgaatccagcccggtcaagcgggagaaagacaaggagaaggacaaggagaag
cgattcagcctcttcagcaagaaaaaactataa
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integrated database retrieval system
