Coregonus clupeaformis (lake whitefish): 121572349
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Entry
121572349 CDS
T08357
Name
(RefSeq) eukaryotic initiation factor 4A-III
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03013
Nucleocytoplasmic transport
cclu03015
mRNA surveillance pathway
cclu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121572349
09122 Translation
03013 Nucleocytoplasmic transport
121572349
03015 mRNA surveillance pathway
121572349
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cclu03019
]
121572349
03041 Spliceosome [BR:
cclu03041
]
121572349
03009 Ribosome biogenesis [BR:
cclu03009
]
121572349
03012 Translation factors [BR:
cclu03012
]
121572349
Enzymes [BR:
cclu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
121572349
Messenger RNA biogenesis [BR:
cclu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
121572349
mRNA cycle factors
Stress granule specific factors
121572349
Spliceosome [BR:
cclu03041
]
Complex C
Other components
EJC/TREX
121572349
Ribosome biogenesis [BR:
cclu03009
]
Eukaryotic type
90S particles
Helicases
121572349
Translation factors [BR:
cclu03012
]
Eukaryotic type
Initiation factors
eIF-4
121572349
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
Cas3-like_C_2
AAA_30
Flavi_DEAD
TniB
Motif
Other DBs
NCBI-GeneID:
121572349
NCBI-ProteinID:
XP_041740342
LinkDB
All DBs
Position
Unknown
AA seq
406 aa
AA seq
DB search
MEVATVPRTRRLLKEEDMTKIEFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQ
QRAIKQIIKGRDVIAQSQSGTGKTATFCVSVLQCLDIQVRETQALILAPTRELAGQIQKV
LLALGDYMNVQCHSCIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLV
LDEADEMLNKGFKEQIYDVYRYLPPATQVCLISATLPHEILEMTNKFMTDPIRILVKRDE
LTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVS
SMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRI
GRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVADLI
NT seq
1221 nt
NT seq
+upstream
nt +downstream
nt
atggaagtagccaccgtaccacgtacgaggcgtctattgaaggaggaagacatgaccaag
atcgagtttgagaccagcgaggaggtcgatgttactcctaccttcgacacgatgggccta
cgagaggatctcctccgtgggatctacgcatacggtttcgagaagccatccgcaatccaa
caaagggcaattaaacagatcatcaagggtagagatgtcattgcacagtctcagtcagga
acaggaaagactgccacgttttgcgtatcagtgctgcagtgtcttgacattcaggtgcgt
gaaacccaagcactgatcctggctcccaccagagagttggctggacagatacagaaggta
ctcctggccctaggtgactacatgaacgtccagtgtcattcctgcatcggagggacaaac
gtgggtgaggacatccgcaaactggactatggccagcacgtggtagcagggacccctggg
agagtgtttgatatgatccgcaggaggagtttgaggacgcgcgccatcaagatgctggtg
ctggacgaagcagacgaaatgctcaacaagggtttcaaagagcagatctatgacgtgtac
cggtacctgccccccgccacccaggtctgcctgatcagcgccacgctgccccacgagatc
ctggagatgaccaacaagttcatgaccgaccccatccgcatcctggtcaaacgtgatgag
ttgactctggagggcatcaagcagttcttcgtggccgtagagagggaggagtggaagttt
gacaccctgtgcgacctgtacgacaccctcaccatcacgcaggctgtcatcttctgcaac
accaagcggaaggttgactggctgactgagaagatgagggaggccaacttcactgtgtcc
tccatgcacggagacatgccccaaaaggagagggagtctatcatgaaagagtttcggtcc
ggcgccagccgagtgctcatctccactgatgtgtgggcgagaggtctggacgtgccccag
gtatccctcatcatcaactacgacctgcccaacaacagagagctgtacatccataggatt
ggccgatcgggtcgttacggccgcaagggtgtggccatcaactttgtgaagaatgacgac
atccgtattctccgtgacattgagcagtactactccacacagatcgatgaaatgccaatg
aatgtggctgacctgatctga
DBGET
integrated database retrieval system
