Coregonus clupeaformis (lake whitefish): 121572620
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Entry
121572620 CDS
T08357
Name
(RefSeq) apoptotic chromatin condensation inducer in the nucleus isoform X1
KO
K12875
apoptotic chromatin condensation inducer in the nucleus
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03013
Nucleocytoplasmic transport
cclu03015
mRNA surveillance pathway
cclu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121572620
09122 Translation
03013 Nucleocytoplasmic transport
121572620
03015 mRNA surveillance pathway
121572620
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cclu03019
]
121572620
03041 Spliceosome [BR:
cclu03041
]
121572620
Messenger RNA biogenesis [BR:
cclu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
121572620
Spliceosome [BR:
cclu03041
]
Complex C
Other components
EJC/TREX
121572620
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RSB_motif
SAP
Motif
Other DBs
NCBI-GeneID:
121572620
NCBI-ProteinID:
XP_045081506
LinkDB
All DBs
Position
16:2517210..2542039
Genome browser
AA seq
1566 aa
AA seq
DB search
MADEDVTLNGKPLQSLRVADLKAALEQRCLPKSGAKNTLIKRLKGALMLENLQRTSTPHI
GLQPNSQIGEEMSQNSFIKQYLAQQQELLRQRLEREAREAAEADESPAGPEEEEQTEEGN
DSDSYHPDKHRPMPSQPPLTRAEEEGGGGPMMMGHQGQGMMMGQGMMSRRPDFGPSSVPQ
ESPNAPGGPGSWMQHRPSLQHGLHHEEPTTPSPPRAVASLSVRVLGDPERQGLPPSMPSR
AQTQEKEGTAPADDDRPAHSVLHLSRSARAAAGGNRVQEDGDDDDSSEEDEDEWGPAAGA
RRGGGRGCAPPPQPQQPSPSVPAARERSRRKLQPPQHIPPQQVVHQPPMQLRQPTPPPSP
PPELSFPLPDTPKQSPPDMDEESEGAGVAVRPPPGGLQRQDSDSSSRSSSPEPLAQRRPG
PLSLLARKMASEGAFGKRGEGALADGQTGPGGEASGPGDGVGSSPGAGAGPGVGVVRFPG
AAITHTGGSSSAGHTGFVTVPEVPAPVVMFGSGAQPQSHPVPLLSVAAVPSITLTTEPQG
PSGETAQKRTEKETKQVEERERKMKQAEKEREKQEEKERESHLPPWQRGRDLTLPSASSQ
FGSGGSEEPAKDQGDTPKMSPFGRDEPLSSAPGSAMTTTTTPPPAIAPKKLRMFSDTSSG
SMISRPKPVQQGSVVVTTPGEPPEPHGISVRPQVVLVSGAQQHTDDTMEVTALNKASVEK
PGWKTGDDGKMEKERDSQAEKERDSQAEKEHDSQAEAEKERDSQAEAEKERDSQAEAEKE
RDSQAEAEKERDSQAEKERDSQKEKERDSQKEKEQERDSQAEKEKERDSQAEKERDSQKE
KERDSQAEKETSKAGETRRRGPEKTVEVEPMGPVLPPSYPGKGEEERRRKEDEGRRKEYE
RLKEEERGRLGERARHRRSSPSSGGDSSSSDSGSSSSRTSGSTSSRDKKKKKTGTGKGDK
KRRLDRGEKNQPAREVKQSSLSEPSCPLERPDPGQTQPIPVGDPQNSEGRMEESTTPKAF
AARKISLTTGSKTSPEGGAAAGGEAESGTAAGRKRRWGSSTAVNAKKPSISITTDSLKSL
IPDIKPSQEAVVDLHPDDIQLSGDEDTTTTREDQGLDKGLKIRRTVTQVVPGENPENGQG
EREEEEEEEEKPERDRGRTQKEKRKNSNSEDTMESQSSTTHDADAKKVIPSDTLVRRSIS
QQKSGVSVTIDDPVRTAKQPSPPRGKVSNIVHVCNLVRPFTLGQLKELLNRTGSVAEDGF
WIDKIKSHCYVTYSSTEEAVATRAALHGVKWPQSNPKVLSVDFCEQNELDFHRGLLTVDP
REEHRPQPGVGPGGPKVRPGALPPLMDGRGDRAVVGGVRDQWAEREREMERRERTRAERE
WDRDKVRDFGGKPGEERERGRRSRSLDRERRRKERDGKEKKTDKKDEPPAKLLDDLFNKT
KAAPCIYWLPLTEEQANQRGKEREERQKERERRRKEQLEEEDKKREEERKERIKSREKEG
GAAVSTGSVSVRGSEGDRDRERERGRDREGDKRRDSGGFRPRGPDTKPSSGFRRSRSRSN
PRDKRR
NT seq
4701 nt
NT seq
+upstream
nt +downstream
nt
atggcggatgaagatgttacgctgaatggtaaacctctacaatcgctccgtgtggcagac
ttgaaagccgctttggagcaacgatgcctccctaaaagcggggcgaaaaatacactcatt
aagcgactgaaaggggctctaatgttggagaatcttcagaggacctccactccccatatt
gggctccagcccaactcccagattggggaggagatgagccagaacagctttataaagcag
tacctggcccagcagcaggagctcctccgccagagactggagagggaggcccgggaggca
gccgaggccgacgaaagcccagcgggcccagaggaggaggagcaaacagaggagggcaac
gacagtgattcctaccaccctgacaagcatcgccccatgccctcccagcccccactgacc
cgggctgaggaagaaggaggaggagggccgatgatgatggggcaccagggccaagggatg
atgatgggccaagggatgatgtctcgcagaccagactttggcccaagctctgtgccccaa
gagtcccctaacgcccctggaggtcctggatcctggatgcagcaccgtccctccctccaa
catggcctccaccacgaggagcccaccaccccttccccgccccgagctgtggcctccctg
tcggtgcgcgtcctaggggacccagagcgccagggcctgcccccgtccatgccctcccgc
gcccagacccaggagaaggaaggcaccgccccggcggatgacgaccgacctgcccactcc
gtactccacctcagccgctccgcccgtgcagcagctggcggtaaccgcgtccaggaagac
ggtgacgatgatgacagcagtgaggaggatgaagatgagtggggacctgcggcgggggcg
aggagaggtggcggaagaggatgtgcccctcccccacagccccagcagccttcccccagc
gtcccagcggcccgagagcgatccagacgcaagctccagcctccgcaacacatcccccct
cagcaggtagtacaccagccccccatgcagctccgccagcccaccccgcccccctctcca
cccccagagctctccttccccctccccgacacccccaaacaaagtccacccgacatggat
gaggagtcagaaggagctggggtggctgtccgcccccctccaggtggcctccagaggcag
gactctgactccagctcccgatctagcagcccagagcccctagcccagcgccggcccgga
cccctctctttgctggcccgcaagatggcgtccgagggagctttcggtaagagaggcgag
ggtgcgctggcggatggccagacaggtcctggaggggaggcttccggaccaggagatgga
gttgggagcagcccaggagctggagcaggaccgggggttggggtggtcaggttccctggg
gctgctatcacccacacaggaggtagcagcagcgcagggcacacgggattcgtcactgta
cctgaggtccctgcacccgtggttatgtttggatcaggagcccagccccagtcccatcct
gtccctctgctgtcggtggcagctgtccccagcataaccctcaccaccgagccccagggt
ccatctggagagacggcacagaagaggacggagaaagagacaaagcaggtggaggagagg
gagaggaagatgaagcaggcggagaaggagagggagaaacaggaagagaaggagagggag
agtcatctgccgccatggcagcgtggacgtgacttgacgcttccatctgcgtcttcacag
tttgggtctggggggtcagaggagcctgcaaaggaccagggagacacccctaaaatgtca
cccttcggcagggacgaacccctatcctccgctcccggctcagccatgacgaccaccacc
acccccccgcctgccatcgcccccaagaagctccgcatgttctccgacacctcctccggc
tccatgatctcccgtcccaaacctgtgcagcaggggtcagtggtggtgaccaccccaggg
gaaccccctgaaccccatggtatatctgtgagaccccaggtggtccttgtctcaggggcc
cagcagcacacagacgacaccatggaggtcactgcactgaacaaggcgtccgtggagaag
cctggatggaaaactggagacgatgggaagatggagaaggagcgtgacagccaggcggag
aaggagcgtgacagccaggcggagaaggagcatgacagccaggcggaggcggagaaggag
cgtgacagccaggcggaggcagagaaggagcgtgacagccaggcggaggcagagaaggag
cgtgacagccaggcggaggcagagaaggagcgtgacagccaggcggagaaggagcgtgac
agccagaaggagaaggagcgtgacagccagaaggagaaggagcaggagcgtgacagccag
gcggagaaggagaaggagcgtgacagccaggcggagaaggagcgtgacagccagaaggag
aaggagcgtgacagccaggcggagaaggagacttctaaagccggggagaccaggagaagg
ggacctgaaaagactgttgaggttgagcccatgggacctgttctgcccccttcttaccca
ggtaagggagaagaagagaggaggaggaaggaagatgaggggaggaggaaggaatatgag
aggttgaaggaagaagagcgaggcagactgggggagagggcgaggcacaggaggtcatcc
ccctccagtggtggcgactcttcatcctcggactctggatcctcttcgtcacgtacctct
ggctccacctcctcccgggacaaaaaaaagaagaagactggcacaggaaaaggggataaa
aagagaagactggacagaggagagaagaaccaacctgccagggaggtaaagcaatcttcc
ctgtcagagccgtcttgccctctggagaggccagacccaggccagacccagcccatcccc
gtcggggacccacagaacagtgagggccgtatggaggagagcaccactcctaaagcgttc
gctgcacgcaagatctccttgaccacaggcagtaagacttctccagagggaggagcagca
gcagggggggaggcagagtccgggaccgccgctgggaggaagaggaggtggggatccagc
acggccgtcaacgccaagaaaccatccatcagcattaccacagactcactcaagtctctg
atcccagacatcaagcccagtcaggaggctgtggtggatctccaccctgatgacatacag
ttgtctggggacgaggacaccaccaccaccagggaggaccagggcctggacaagggcctc
aagatcagacgcaccgtcacacaggtggtcccaggtgaaaacccggagaatggccaggga
gaacgagaggaggaggaggaggaggaggagaaaccggagcgtgacagagggaggacacag
aaagagaagaggaagaacagcaactcagaagacaccatggagtctcagtcctccactact
cacgacgccgacgctaagaaagtcattcccagtgatactctggtgcgtcgctccatcagt
cagcagaagtcaggtgtgtctgttaccatcgacgacccggtccgcaccgccaaacagccc
tctccgcccagaggcaaagtctccaacatcgtccacgtctgtaacctggtgcgacctttc
accctgggccagctgaaggagctactgaacaggacaggctcagtggcagaggatggcttc
tggatcgataagatcaagtctcactgctacgtcacttactccagcacagaggaggctgtg
gccacgcgagctgctctccacggggtgaagtggccccaaagcaaccctaaggtcctcagt
gtggacttctgtgagcagaacgagctggacttccacagaggcctgctgacagtggacccc
agagaggagcaccgcccccagcctggtgtgggtcctggaggtcccaaagtccgaccgggc
gcgctgccccctctgatggacgggcgcggggaccgcgccgtggtcggaggggtgcgggac
cagtgggcggagagagagagggagatggaacgccgggagagaaccagggcggaacgtgag
tgggaccgggacaaggttcgagacttcggaggcaaaccaggagaggagagggagagaggg
aggagatctcgctccctggatagagagaggaggcggaaggagagggacgggaaggagaag
aagaccgacaaaaaggacgagcctcctgccaaattactagacgacctcttcaataagacc
aaagcagctccctgtatatactggctccccctcactgaagaacaggcaaaccagagggga
aaagaacgggaagagcgacagaaagaacgagagaggaggcggaaagaacagctggaggag
gaggacaagaagcgagaggaggagagaaaggagagaattaaaagcagagagaaggaggga
ggagctgcggtaagcactggaagtgtgagtgtccggggatctgagggagaccgggacaga
gagagggagcgagggagggacagagagggggataagaggagggacagtggtggtttcaga
cccagaggtcctgatactaaaccctcttcagggttccgacgctcccgtagccgtagcaac
ccccgagacaaacgccgttga
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