KEGG   Coregonus clupeaformis (lake whitefish): 121572633
Entry
121572633         CDS       T08357                                 
Name
(RefSeq) syndecan-3
  KO
K16337  syndecan 3
Organism
cclu  Coregonus clupeaformis (lake whitefish)
Pathway
cclu04514  Cell adhesion molecules
cclu04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:cclu00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04514 Cell adhesion molecules
    121572633
 09140 Cellular Processes
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    121572633
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00535 Proteoglycans [BR:cclu00535]
    121572633
Proteoglycans [BR:cclu00535]
 Cell surface proteoglycans
  Syndecan family (transmembrane HSPG)
   121572633
SSDB
Motif
Pfam: Syndecan DUF4666 PRP38_assoc TGF_beta_GS POP1_C AAA_11 Myc_target_1
Other DBs
NCBI-GeneID: 121572633
NCBI-ProteinID: XP_045078226
LinkDB
Position
8:58189827..58262777
AA seq 424 aa
MKLPPCLMALIAALLAHSALGQTWVPLIDEESSSTDEFYDDEDLFSGSGSGFPEMKVNPT
EMGVSFTTEAPLHLSTTQATGPAPSAPPVAEPSPNPDVLPSPLPTEGEGESGVVWETERE
IEREREREREQEREREKERQREKERQRERERERIREIEREQERERERERARAAQTTISPR
GPAALPMATTSLATPPAESAAPSSGVEDFGTTEEEDEDVYLSPDPTTSLLMETTTEEEEE
VTTTATETETAPIPETTAPPTMTGPAPTERSSSAPFRPRVPVTMLTKAAPTEKSTRPQPP
STTNNELGVNGPSGDFEIREEDRLPGNEVVGHGRGVETEADLIGNTINTGSSAAQLPQKN
ILERKEVLIAVIVGGVVGALFAAFLVMLLVYRMKKKDEGSYTLEEPKQATVTYQKSDKQE
EFYA
NT seq 1275 nt   +upstreamnt  +downstreamnt
atgaagctgccgccttgtttgatggcgctcatcgcggcactgctcgctcactccgcgctg
ggtcagacctgggttccgttaatagatgaagaaagttcttccacagatgagttctatgat
gatgaagacctcttctcaggctccggatctggctttccagagatgaaggtcaaccctaca
gaaatgggcgtatctttcaccacagaagcacccctccacctctccaccacccaggccact
ggccccgccccctcggccccacctgtagccgagcccagccccaaccctgacgtccttcct
tccccactacccactgagggagagggggagagtggggtagtgtgggagacagagagggag
attgagagggagagagagagggagagggaacaagagagggagagagaaaaagagaggcag
agagaaaaagagaggcagagagagagagagagagagaggatacgggaaatagagagggaa
caagaaagagaacgtgaaagagagagggcgagagccgcccagactaccatctccccccgc
ggccctgcagctcttcccatggcgaccaccagcttggcgactcctccggcggagagcgca
gcgccctctagtggtgtggaggacttcggcaccacagaagaagaggacgaggatgtttac
ctgtccccagaccccaccaccagtttacttatggagaccaccacagaagaagaagaagaa
gtgaccactactgccacagagacagagaccgcacccatcccagagacaacagctccaccc
actatgactggcccagccccaactgagaggtctagctccgcccccttcaggcccagggtt
cctgtgaccatgcttactaaagctgcacccacagagaagagcacacgtccccagccaccc
tctacgacgaataatgagttgggggttaacggacccagtggagactttgagatccgtgag
gaagaccgtctgccgggcaacgaggttgttgggcatggccgtggtgtggagacggaggcg
gatctgattggcaacacgatcaacacaggaagttctgccgctcaacttcctcagaagaac
atcctggagaggaaggaggtcctgatagcggtgatagtgggaggcgtagtgggggctctg
ttcgcagcgttccttgtcatgctgctggtgtacaggatgaagaagaaggatgaaggcagc
tacacgctggaggaacccaagcaggccaccgtcacctaccagaaatctgacaaacaggag
gagttctacgcataa

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