Coregonus clupeaformis (lake whitefish): 121572633
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Entry
121572633 CDS
T08357
Name
(RefSeq) syndecan-3
KO
K16337
syndecan 3
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04514
Cell adhesion molecules
cclu04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
121572633
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
121572633
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
cclu00535
]
121572633
Proteoglycans [BR:
cclu00535
]
Cell surface proteoglycans
Syndecan family (transmembrane HSPG)
121572633
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Motif
Pfam:
Syndecan
DUF4666
PRP38_assoc
TGF_beta_GS
POP1_C
AAA_11
Myc_target_1
Motif
Other DBs
NCBI-GeneID:
121572633
NCBI-ProteinID:
XP_045078226
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Position
8:58189827..58262777
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AA seq
424 aa
AA seq
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MKLPPCLMALIAALLAHSALGQTWVPLIDEESSSTDEFYDDEDLFSGSGSGFPEMKVNPT
EMGVSFTTEAPLHLSTTQATGPAPSAPPVAEPSPNPDVLPSPLPTEGEGESGVVWETERE
IEREREREREQEREREKERQREKERQRERERERIREIEREQERERERERARAAQTTISPR
GPAALPMATTSLATPPAESAAPSSGVEDFGTTEEEDEDVYLSPDPTTSLLMETTTEEEEE
VTTTATETETAPIPETTAPPTMTGPAPTERSSSAPFRPRVPVTMLTKAAPTEKSTRPQPP
STTNNELGVNGPSGDFEIREEDRLPGNEVVGHGRGVETEADLIGNTINTGSSAAQLPQKN
ILERKEVLIAVIVGGVVGALFAAFLVMLLVYRMKKKDEGSYTLEEPKQATVTYQKSDKQE
EFYA
NT seq
1275 nt
NT seq
+upstream
nt +downstream
nt
atgaagctgccgccttgtttgatggcgctcatcgcggcactgctcgctcactccgcgctg
ggtcagacctgggttccgttaatagatgaagaaagttcttccacagatgagttctatgat
gatgaagacctcttctcaggctccggatctggctttccagagatgaaggtcaaccctaca
gaaatgggcgtatctttcaccacagaagcacccctccacctctccaccacccaggccact
ggccccgccccctcggccccacctgtagccgagcccagccccaaccctgacgtccttcct
tccccactacccactgagggagagggggagagtggggtagtgtgggagacagagagggag
attgagagggagagagagagggagagggaacaagagagggagagagaaaaagagaggcag
agagaaaaagagaggcagagagagagagagagagagaggatacgggaaatagagagggaa
caagaaagagaacgtgaaagagagagggcgagagccgcccagactaccatctccccccgc
ggccctgcagctcttcccatggcgaccaccagcttggcgactcctccggcggagagcgca
gcgccctctagtggtgtggaggacttcggcaccacagaagaagaggacgaggatgtttac
ctgtccccagaccccaccaccagtttacttatggagaccaccacagaagaagaagaagaa
gtgaccactactgccacagagacagagaccgcacccatcccagagacaacagctccaccc
actatgactggcccagccccaactgagaggtctagctccgcccccttcaggcccagggtt
cctgtgaccatgcttactaaagctgcacccacagagaagagcacacgtccccagccaccc
tctacgacgaataatgagttgggggttaacggacccagtggagactttgagatccgtgag
gaagaccgtctgccgggcaacgaggttgttgggcatggccgtggtgtggagacggaggcg
gatctgattggcaacacgatcaacacaggaagttctgccgctcaacttcctcagaagaac
atcctggagaggaaggaggtcctgatagcggtgatagtgggaggcgtagtgggggctctg
ttcgcagcgttccttgtcatgctgctggtgtacaggatgaagaagaaggatgaaggcagc
tacacgctggaggaacccaagcaggccaccgtcacctaccagaaatctgacaaacaggag
gagttctacgcataa
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