Coregonus clupeaformis (lake whitefish): 121572822
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Entry
121572822 CDS
T08357
Name
(RefSeq) probable ribonuclease ZC3H12C
KO
K18668
ribonuclease ZC3H12 [EC:3.1.-.-]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cclu03019
]
121572822
Messenger RNA biogenesis [BR:
cclu03019
]
Eukaryotic type
mRNA degradation factors
Other degradation factors
RNases
121572822
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
RNase_Zc3h12a
Regnase_1_C
UBA_6
zf-CCCH_4
zf-CCCH_2
Omega-toxin
UBA_N4BP1_C
Motif
Other DBs
NCBI-GeneID:
121572822
NCBI-ProteinID:
XP_041740785
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Position
40:complement(22318589..22339390)
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AA seq
892 aa
AA seq
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MGLKDHLEDGTGHNLNLGLDLDYLHVEGTDRQASLSATAGTHSGALEGEEAEVGGTHSSV
SSSSISSSSSSSSSSSSNSSEESTASDSEDERGVHHGFGSEAETPHPHPCHPAGLGPAQI
PPTRDPKLPTDPLTEYRSKMEFALKLGYSEELVLLVLRKLGPDALINDILGELVKLGTRT
ETEQAGESAASQSPSSSSLSSSSLDSCRLDCSSQLLLDDKENIRPVVVDGSNVAMSHGNK
EVFSCHGIQLAVDWFLERGHRDITVFVPAWRKEQSRPDALITDQEILRRLEKDKILVFTP
SRRVQGRRVVCYDDRFIVKLAYESDGIIVSNDNYRDLANEKPEWKKFIDERLLMYSFVND
KFMPPDDPLGRHGPSLENFLRKRPVIPEHRKQPCPYGKKCTYGHKCKFYHPERGSQPQRS
VADELRASAKNSSSSSTSSSKSLGKALLVKSHSMSSRSSADGLPDPHLAAPKRRSDPGLC
TPSYNNLLEERLGGRTKAEARRGSSSSSSSSCSSSLLVPAPGGPPSSQGFSLQDWRDHNA
GRNGSCRAPSLLGLGHSESYPSCESPELGCNSLMRAYSSLSLVVPRSPERLFPADLRTGL
LASDCSSEGSISSDSFSPDPLLEDGIKCHHPHHHHNHCPSRYPHHPNHPPPGLTQHPHGG
SHHSYPLAQSIESPQGFSLEDPPSSFHYFKAHLTYLPPHLQHPSVGSSSGCSEDYPPQPP
PQNSSPHSHSHSSTLGHNLGGSTWQDNNSLQDSRLYERSPVHPRRTYPWPGQEQWLASWD
PHYQQPPQPCYEPFTFQSQPEGHEQPWHSPWPRGTHLPHPQPPSSSHPPPQPSMAPQHQG
GRYQDVRDKVFVNLCNIFPQELVKVVMGRNPHVMDAQQLAAAILAEKSQACY
NT seq
2679 nt
NT seq
+upstream
nt +downstream
nt
atgggcctgaaggaccatctggaggatggaacaggccacaacctcaacctgggtctggat
ttggactacctccatgtggaaggcaccgaccgccaggccagcttgagtgccacagccggc
acccactcaggagccttggagggggaagaggcggaggtgggaggcacccatagcagtgtc
agtagtagcagcatcagcagtagtagtagtagtagtagtagtagtagtagtaactcctct
gaagaaagtactgcgtcagacagcgaagatgagcggggggtccaccatggctttggttct
gaagctgagaccccccacccgcacccctgtcaccctgctggcctgggcccggcacagatc
ccccccactagggaccccaaactccccaccgaccccctcacagagtaccgctccaagatg
gagtttgccctgaagctgggctactctgaggagctggttctgctggtgctgaggaagtta
gggcctgacgccctcatcaacgacatactgggagaactggtcaaactgggcaccaggaca
gagacagagcaggctggggagtctgccgcctcccagtcgccctcttcttcctccttatcc
tcctcctctctggactcctgcaggctggactgctcctcccagcttctgttggatgacaag
gagaacatcaggcctgtggtggtggatgggagtaatgtagccatgagtcatggtaataag
gaagtgttctcctgtcacggcatccagctggctgttgattggttcctggaacgtggtcac
cgtgacatcactgtgtttgtgcccgcctggagaaaggaacagtccagaccggacgccctc
atcacagaccaggagatattgaggcgtctggagaaagacaagatcctggtgttcactccg
tctcgtcgggtccagggccgccgtgtggtctgctatgacgaccgcttcatcgtcaagctg
gcctacgagtccgacggcatcatcgtctctaatgacaactaccgggacctggccaatgag
aagccagagtggaagaagttcattgacgagcggctgctcatgtactcattcgtcaatgac
aagttcatgcctcctgatgatcctctgggtcgccatggtcccagtctggagaacttcctg
aggaagagaccagtgatcccagaacacaggaagcagccctgcccctatgggaagaagtgt
acttacggccacaagtgtaagttctaccaccctgagagaggcagtcagccccagcgctct
gtggccgacgagctgcgtgccagtgctaagaactcctcttcctcctccacatcttcctcc
aagagcctgggcaaggctctgctggtgaagagccacagcatgtccagtcgctccagtgca
gatgggctcccagacccccacctagccgccccaaagaggcggtcggaccccggcctgtgc
acgccctcctacaacaacctcctggaggagcggctgggcgggaggaccaaagcagaggcc
cgcagagggagtagcagcagtagtagcagcagctgtagcagcagcctcctggtccctgcc
cctgggggtcctccttccagccaaggcttctctctgcaggattggagggaccacaacgca
gggagaaacggctcctgcagagctccaagtctgttggggcttggtcattctgagtcgtat
cccagctgtgagtccccagagctgggctgcaactccctgatgagggcctactccagcctg
agcctggtagtgccacggagccccgagcggctgttcccggctgacctacggacgggcttg
ctggcatctgactgcagcagcgagggcagcattagctctgactccttctcccctgacccc
ctgctggaggatggcatcaaatgccaccacccccatcaccaccacaatcactgccccagc
cgctacccacaccaccccaaccacccgccgcctggtctgacccagcacccacatggaggc
tcccaccatagctaccccctagctcagagcattgagagtccacagggcttcagcttggag
gatcctccctcctccttccactacttcaaggcccatctcacctaccttcctccccatctt
cagcacccgtctgtggggagcagctctggctgttctgaggactatcctccccaacctcca
ccccagaactccagcccccactcccactctcacagctcaactctggggcataacctgggg
ggctccacctggcaggacaacaacagcctccaggactcccggctctacgagcgctcccct
gtccaccccagaaggacctacccttggccgggacaggagcagtggctggccagctgggac
ccccactaccagcagcccccccagccctgctacgagcccttcaccttccagtcccagcct
gagggccacgaacaaccctggcactcgccctggcccagggggacacacttgccccatcct
caacccccttcctcctcccatcctccaccccaaccctccatggccccccagcaccagggg
ggaagataccaggacgtgagggataaggtgtttgtcaacctgtgtaacatctttccccaa
gagctggtgaaggtggtgatggggaggaacccccatgtgatggacgcccagcagctggct
gcagccatcctggctgagaagtcccaggcttgctactga
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