KEGG   Coregonus clupeaformis (lake whitefish): 121573019
Entry
121573019         CDS       T08357                                 
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein-like
  KO
K12857  Prp8 binding protein
Organism
cclu  Coregonus clupeaformis (lake whitefish)
Pathway
cclu03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cclu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    121573019
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:cclu03041]
    121573019
Spliceosome [BR:cclu03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    121573019
 Complex C
   U5 SnRNP specific factors
    121573019
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_TEP1_2nd Beta-prop_EML_2 WDR55 EIF3I Beta-prop_CAF1B_HIR1 Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd Beta-prop_TEP1_C Beta-prop_WDR75_1st Beta-prop_EML NBCH_WD40 WDR90_beta-prop_4th Beta-prop_SPT8 Beta-prop_EIPR1 ANAPC4_WD40 Beta-prop_IFT122_1st Beta-prop_SCAP WD40_MABP1-WDR62_1st WD40_RFWD3 Beta-prop_RIG_2nd Beta-prop_DCAF4 Beta-prop_WDR75_2nd Beta-prop_IFT140_1st Beta-prop_WDR19_1st Beta-prop_Vps41 Beta-prop_WDR35_TULP_N Beta-prop_NWD2_C Beta-prop_IFT140_2nd PEP5_VPS11_N Beta-prop_Nup120_160 WD40_like WDR54 Beta-prop_VPS8
Other DBs
NCBI-GeneID: 121573019
NCBI-ProteinID: XP_041740989
LinkDB
Position
8:58093332..58124034
AA seq 348 aa
MIEPKKRPGDMALVPAGGVKRPRTELIAAAQSQQLVAMGPPRSSSLQAPIMLMCGHEGEV
YCCKFHPNGATLASSGYDRLILMWNVYGDCDNFATLKGHSGAVMELHYNTDGSLLFSAST
DKTVGVWDSETGERIKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDIRKKGAVHT
FQNTYQVLAVTFNDTSDQILSGGIDNDIKVWDLRQNKMIYSMHGHGDSLTGLCLSSEGSY
LLSNSMDNTVRIWDVRPFAPKERCVKIFQGNIHNFEKNLLRCSWSADGSKIAAGSADRFV
YVWDTTSRRILYKLPGHAGSVNEVAFHPEEPIVLSGASDKRLYMGEIQ
NT seq 1047 nt   +upstreamnt  +downstreamnt
atgattgagccaaagaagagaccgggggacatggctttggttcctgccggcggagtcaag
aggcccaggaccgagctgatcgctgcggcacagtcgcaacaactcgtggccatgggccct
ccccgcagctccagcctgcaggctcccatcatgttgatgtgtggccatgagggagaggtc
tactgctgcaagttccatcctaacggggccacactggcctcctctggctatgaccggctc
atcttgatgtggaatgtgtacggggactgtgataactttgccaccctgaagggacacagt
ggagctgtgatggagcttcactacaacacagacggcagcctgctgttcagtgccagcaca
gataagactgtgggagtgtgggacagtgaaacgggcgagaggatcaagcgcctgaaaggc
cacacctccttcgttaactcctgctatcctgctcgccgcgggcctcagctcgtctgtacc
ggcagcgacgacggaaccgtcaagctgtgggacatccgtaagaagggggcggtccataca
ttccagaacacctaccaggtgttggccgtcacattcaacgacaccagcgaccagatcctg
tctggaggcatcgacaacgacatcaaggtgtgggacctgaggcagaataagatgatctac
agtatgcatggtcatggtgattctctgactggactctgcctcagctcagagggatcctac
ctcctctccaactccatggacaacacagtgcgtatttgggacgtccgtccgttcgctccc
aaggagaggtgtgtgaagatattccaggggaacattcacaactttgagaagaaccttctg
aggtgttcctggtccgctgacggcagcaagattgccgcaggctcagccgacaggtttgtg
tatgtgtgggacaccacctctcgtaggatcctgtacaagctgccaggccatgctgggtca
gtcaacgaggtcgccttccatcccgaggagcctattgtcctctctggcgccagtgacaag
agactctacatgggagagattcagtag

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