Coregonus clupeaformis (lake whitefish): 121573283
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Entry
121573283 CDS
T08357
Name
(RefSeq) LOW QUALITY PROTEIN: protocadherin-17
KO
K16499
protocadherin delta 2
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
cclu04515
]
121573283
Cell adhesion molecules [BR:
cclu04515
]
Cadherins
Protocadherins
121573283
BRITE hierarchy
Motif
Pfam:
Cadherin
Cadherin_2
PepSY
Cadherin_C_2
Sde0182_C
Motif
Other DBs
NCBI-GeneID:
121573283
NCBI-ProteinID:
XP_045078366
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All DBs
Position
9:1048685..1211499
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AA seq
1170 aa
AA seq
DB search
MYLSILFFLLLWAQALALKNLNYSVNEEQGPGTVIGNIAKDAKLGLGQGGQGKKSNFRVL
ENSAPHLIDVDPESGLLYTKQRIDRETLCRRNPKCQLSMEVFANDKEICMIKVDIVDIND
NSPTFPSDQIDIDISENAAPGTRFPLTSAHDPDAGENGLKTYQITRDDYNLFSLDVKSRG
DGTKFPELVIQRPLDREERNHHTLILTATDGGEYPRSGTMQINVKVIDSNDNSPVFEQPS
YVVEIPENSPPGKVLIDLNATDPDEGSNGQVVYSFSGYAPDRIRELFSIDSRTGVIKIQG
EIDYEENPIIEIDVQAKDLGPNPIPGHCKVTVNVIDRNDNWPSIGFVSVRQGAISEAAPP
GTVIALVRVTDKDSGRNGKLQCRVLGNVPFKLEENYDNFYTVVTDRPLDREQQDEYNVTI
VAKDNGSPPLNSTKSFTVKILDENDNVPRFTKAVYLLQVPENNIPGEYLGSVLALDPDLG
QNGTVFYSILNSNVSGGDVNTFVNVNAANGAIYAVRSFNYEQIKFFDFKVLAKDAGSPHL
ESNTTVRVSVLDVNDNIPVIVLPLLLNDTAEIHVPRNVGVGYIITTVRAVDNDYGESGRL
TYEISDGNEERLFEMDPVTGEVRTAHPFWEDVSPTVELIIRVMDHGKPTLTTAARLIVKA
YSGPLPGGEPHINEEQHNWDASLPLIVTLSIISMMLLAAMVTIAVKCKRENKEIRTYNCR
IAEYSHPQLGKGKKKKINKNDIMLVQSEVEERDAMNVMNVVSSPSLATSPMYFDYQTRLP
LSSPRSEVMYLKPTANNLSVPQGHGVSCHTSFTGPVTNTTDTPSNRMSIIQTDNFPTEPN
YMGSRQQFVQSSSTFKDPERASLRDSGHGDSDQADSDQDTNKGSCCDMSAKEALKMKATG
VKPPPLEQEEDCVNCTDECRVLGHSDRCWMPQFPAGAGGGGANQAEGVDYRNNMFVPAGM
EAAMETTETYETVNPNGKKTFCTFGKERRDHTILVANVKPYLKAKRALSPLLQEVPSASN
SPTKGCSSSSNNSPCASSTKSPADGAETKPTPSHYCSGPPDGQYHSPNKQSRDPGLLHHH
NPHGPAYPSLSCDPVAKVLAEARSRISQEAGVGVRAGTDMDCVLEMEGGIHGGGELGRDG
VDADQVVRDIDKLLQDCRGSETATGTLRRK
NT seq
3513 nt
NT seq
+upstream
nt +downstream
nt
atgtatctttctattttatttttccttctcctgtgggctcaagccctggctttgaaaaac
ttgaattattccgttaacgaagaacaaggaccggggacggttatagggaacatagccaaa
gatgctaaactcggactcgggcaaggaggacaggggaagaaatccaacttcagggttttg
gagaattcagctccacatctcatcgatgtggaccctgagagcgggctgctctataccaag
caacgcatcgacagggaaacactgtgtcggcggaaccccaagtgccagctctccatggag
gtattcgctaacgacaaagagatctgcatgattaaggtagatatagtggacatcaacgac
aactcgcccacgttcccttctgatcagattgatatcgacatttctgagaacgctgccccc
ggcacccgcttcccgctgactagcgcgcatgacccggacgccggggagaatgggctgaaa
acgtatcagatcacacgagacgactacaatctattttctctggatgtaaaatcccgcggg
gatgggactaaatttcccgagttagttatccaacggccattagaccgggaggaacgtaac
catcacaccctcatcctaaccgctacggacggtggggagtatcccagatcaggaaccatg
cagattaatgtgaaagttattgactctaacgataacagccctgtgtttgaacagccctcc
tatgttgtagaaatcccagaaaactcccccccggggaaagtattgatagatttaaacgcc
acagacccagacgagggttccaacggtcaggtggtgtattcattcagcggttatgcccct
gatagaatcagagaactcttctctatagattctagaacgggagtcattaaaatccaagga
gagattgactatgaggagaaccctattatagaaatagatgttcaggcgaaggatctgggc
cctaaccccatcccaggccactgtaaagtaacggtgaatgtgattgacaggaatgacaac
tggccctccattgggtttgtgtctgtgaggcagggggccattagcgaggcagccccacca
ggcacggtcattgccctggtcagagtcacggacaaagactctgggaggaacgggaagctc
cagtgtagagtcctgggaaacgttccgttcaaactagaggagaactacgacaacttctac
accgtggtgacggacaggcctctggacagagaacagcaggacgagtacaacgtcaccatc
gtcgccaaggacaacggctccccgccccttaactccaccaagtcgttcacggtgaagatt
ctagacgagaacgataacgttccgcgcttcaccaaagccgtgtacctgctccaggtgccg
gagaacaacatccccggggagtatctgggttccgtcctcgcactagacccggacctgggc
cagaacggaaccgtgttctactccatcctcaactccaacgtgagcggaggagacgtcaac
accttcgtgaacgtgaacgcggccaacggggcaatctacgccgtgaggtcgttcaactac
gagcagatcaagttctttgattttaaggttttagcgaaggatgcggggtctccccaccta
gagagcaacaccacggtcagggtcagcgtcttagacgttaacgacaacatccccgtcatc
gttctcccgctgctcctgaacgacacggcggagatccacgtgccacggaacgtcggcgta
ggttacatcatcaccacggtgagggcggtcgacaacgattacggcgagagcgggcggttg
acctacgagatctctgacggtaacgaggagcgtctgttcgagatggacccggtgacgggc
gaggtgcgtaccgctcaccccttctgggaggacgtcagccccacggtggagctgatcatc
agggtgatggaccacgggaagcccaccctcaccaccgccgcacgcctcatcgtcaaggcc
tacagcgggccgctcccgggcggggagccccacatcaacgaagagcagcacaactgggac
gcctcgctacccctcatcgtcaccttatccatcatctccatgatgctgctggctgccatg
gtaaccatcgccgtgaagtgcaaacgggagaacaaagagatcaggacgtacaactgccgc
atcgcagagtactctcacccacagctgggcaaaggcaagaagaagaagatcaacaagaac
gacatcatgctggttcagagcgaggtggaggaacgggacgcaatgaacgtcatgaatgtg
gtgagctcaccatcgctcgccacctcccccatgtatttcgattaccagacgcggctgccg
ctgagctcgcccaggtcggaggtcatgtacctcaagcccacggccaacaacctgtcggtg
ccccagggacacggcgtcagctgtcacacgtccttcactggcccggtgactaacaccaca
gatacccccagtaacaggatgtccattatacagacagacaattttcccactgagcccaat
tacatgggcagcaggcagcagtttgttcaaagcagctcgacattcaaggacccagagcga
gccagccttagagacagtggtcacggagatagcgatcaggccgatagcgaccaagacact
aataaaggctcgtgctgcgacatgtcggccaaggaggcgctgaagatgaaggctacgggc
gttaaaccacctcctctggagcaggaagaagactgtgttaattgcacagatgagtgcaga
gtcctaggccactccgaccgttgctggatgccgcaattcccagcgggagcgggaggtgga
ggagccaaccaggcagagggtgtggactaccgcaacaacatgttcgtccccgcggggatg
gaggctgccatggagaccacagaaacgtacgagaccgtcaaccccaacgggaagaaaacc
ttctgcaccttcgggaaggagcgtcgggaccacaccattttagtggctaacgtcaagcct
tacctgaaggccaagagagccctctctccgcttctccaggaggtcccctcagcctccaac
tcccccactaaaggctgctcctcctcctccaacaactccccctgcgcctcctccactaaa
tcccccgcagacggagccgagacgaaacccacccccagccactattgctcaggccccccc
gacgggcagtaccactcccccaacaaacagagcagagacccaggcctccttcaccaccac
aacccccatggcccagcctacccttctctctcctgcgacccggtggccaaggttctagcg
gaggcccggtcccggatcagccaggaggctggggtgggggtcagggcgggaacagatatg
gactgtgttctggaaatggaaggggggatccacggagggggggagctggggcgggacggg
gtcgatgcagaccaggtggtcagagacatcgacaaactgctgcaggactgcagaggcagc
gagacagccaccggcactctcagaagaaagtga
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