Coregonus clupeaformis (lake whitefish): 121573311
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Entry
121573311 CDS
T08357
Symbol
atg13
Name
(RefSeq) LOW QUALITY PROTEIN: autophagy-related protein 13
KO
K08331
autophagy-related protein 13
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04136
Autophagy - other
cclu04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
121573311 (atg13)
04136 Autophagy - other
121573311 (atg13)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cclu04131
]
121573311 (atg13)
03029 Mitochondrial biogenesis [BR:
cclu03029
]
121573311 (atg13)
Membrane trafficking [BR:
cclu04131
]
Autophagy
Autophagosome formation proteins
ULK complex
121573311 (atg13)
Atg1 complex
121573311 (atg13)
Mitochondrial biogenesis [BR:
cclu03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-independent mechanism factors
121573311 (atg13)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATG13
Motif
Other DBs
NCBI-GeneID:
121573311
NCBI-ProteinID:
XP_041741120
LinkDB
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Position
9:complement(462842..475256)
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AA seq
545 aa
AA seq
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MMDSDLSPQDKKDLDKFIKFFALKTVQVIVQARLGEKVCTRSLSSPTGSDWFNLAIKDIP
EVTHEAKKALAGQLPGIGRSMCVEISLKTSEGDSMELETWCLEMNEKCDKDIKVSYTVYN
RLSLLLKSLLAITRVTPAYKLSRKQGHDYVILYRIYFGEVQLTGLGEGFQTVRVGVVGTP
IGTITLSCAYRTNLAFMSTRQFERTAPIMGIIIDHFVERPFGNMGHMHPCNYRAPGEDEG
AYTGVEDSQEVCTTSFSTSPPSQCVFTVSKAHLKTPKPAVMDTLKVPMMGLAFSHQLYCS
RLSYQPPVVVGAADFCPPSTLNTANPHQMGIPGKEGGVPQQVPLQPCHGAQAEHGRVSSC
PPADHVPVTPSSSGEDAETSSRTVEVKSTSPSDVLETTFTRKVGAFVNKPGTQVTTASLD
LPFAAFAPRAYDLEENDPMVQPPESPATSXPLQGSLHSQGSGESGGPAQDDFVMVDFKPA
FSKDDLLPMDLGTFYREFQNPPQLASLTIDVSSQSMAEDLDSLPEKLAVYEKNIDEFDAF
VDTLQ
NT seq
1638 nt
NT seq
+upstream
nt +downstream
nt
atgatggacagtgatctaagtcctcaggataaaaaagacttggacaagttcataaagttt
ttcgctttgaagacagtgcaggtgatagtccaagcgcgacttggggaaaaagtatgcaca
cgctccttgtcttcacctactggctctgattggttcaatctggcaatcaaagatatccca
gaagttacacatgaggcaaagaaagctctggccgggcagcttcctggcatcggacgatcc
atgtgtgttgagatctccctcaaaacctcagagggagactcaatggaattagagacatgg
tgtctcgaaatgaacgagaagtgtgacaaagatattaaggtgtcctacactgtctataac
cgcctgtcattactgctcaagtcactgctggccataacaagggtaaccccagcctacaaa
ctctcacgaaagcaagggcatgactatgtcatactgtacaggatatattttggagaggtt
caactcacaggattgggagaagggttccagacagtgcgtgtaggagttgtgggaactccc
attggaaccatcaccttatcttgtgcttacaggacaaacctggccttcatgtccaccagg
cagtttgagaggacggctccgattatgggtataattattgaccacttcgttgagcgcccc
tttggcaacatgggacacatgcatccatgtaactacagagcaccaggggaagatgaagga
gcatacactggggtggaggattctcaggaagtgtgcaccacctccttctccacttctcca
ccctcacaatgtgtgttcactgtaagtaaggcacatttaaagacgcctaaacctgcagtg
atggacactctgaaagtccccatgatgggcctggccttctcacaccaactctactgctct
cgtctttcttatcagcctcctgtggttgttggagctgctgacttctgccccccctccacc
ttaaacactgccaacccacaccagatgggaattccagggaaggaagggggcgtaccccag
caggtgcctttgcagccttgtcatggtgcccaggcagagcatggacgagtgtcctcatgc
ccccctgctgatcatgttcctgtcacgccctccagcagtggtgaggatgcagagacctcg
tcgaggaccgttgaggtgaagagtacgtctccctctgatgtactggagaccacattcacc
aggaaagtgggtgcctttgtcaacaagccaggcacacaggtaaccacagcaagcctggat
ttaccatttgcagcgtttgctcccagagcctatgacctcgaggaaaatgaccctatggtt
cagccaccggagtccccagccacgtccntccccctgcagggcagtttgcactcccaaggc
tctggtgagagtggaggtccggcacaggatgactttgttatggtggactttaagcctgca
ttctctaaggatgacctccttcccatggaccttggcacattctacagagagttccagaac
cccccacagctcgccagcctcactattgatgtcagttctcagtccatggcagaagacctg
gactctcttcctgaaaaactggcagtatacgagaagaacattgatgaatttgatgcattt
gtggacacattgcagtag
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