Coregonus clupeaformis (lake whitefish): 121573435
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Entry
121573435 CDS
T08357
Name
(RefSeq) UV excision repair protein RAD23 homolog B
KO
K10839
UV excision repair protein RAD23
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03420
Nucleotide excision repair
cclu04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
121573435
09124 Replication and repair
03420 Nucleotide excision repair
121573435
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03051 Proteasome [BR:
cclu03051
]
121573435
03400 DNA repair and recombination proteins [BR:
cclu03400
]
121573435
Proteasome [BR:
cclu03051
]
Eukaryotic proteasome
Proteasome interacting proteins (PIPs)
UBL-UBA shuttle proteins
121573435
DNA repair and recombination proteins [BR:
cclu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
XPC-HR23B-CETN2 complex
121573435
BRITE hierarchy
Motif
Pfam:
UBA
XPC-binding
ubiquitin
Rad60-SLD
Crinkler
Rad60-SLD_2
UBA_3
CUE
RAP1
Dsc3_N
BASP1
Motif
Other DBs
NCBI-GeneID:
121573435
NCBI-ProteinID:
XP_041741370
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All DBs
Position
9:complement(19965304..19978926)
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AA seq
380 aa
AA seq
DB search
MQITLKTLQQQTFKIDIDEEETVKTLKERIENEKGNDGFPVAWQKLIYAGKILNDDTAIK
DYKIDEKNFVVVMVAKPKAAPAASQPSDSASTTSSSSSTTAPTVPTAASSGSENPPEGSK
PAEERPCNTSAPASTPTSSSGLLTNVNMFEEATSALVTGQSYENMVTEMMLMGYEREQVV
AALRASFNNPDRAVEYLLTGIPAGEEGDAGADSVVPPVGGGTPALNTGSMTTPASVATGA
NPLGFLVNQPQFLQMRRIIQQNPSLLPALLQQIGRENPQLLQQISSHQEQFIQMLNEPAQ
EGGGGGGGGGGGGGGGGVAVGGEAGSGMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFA
CEKNENLAANFLLQQNFDDD
NT seq
1143 nt
NT seq
+upstream
nt +downstream
nt
atgcagatcactttgaaaaccctccagcagcagacatttaaaatcgacatagacgaagag
gagacggtaaaaaccttaaaggaaagaattgagaatgagaagggaaacgatggttttccg
gttgcatggcagaagttgatatatgcagggaaaatcctaaatgatgacactgctattaag
gattataagattgatgagaagaactttgtggttgtcatggtggcaaagcctaaagcagcc
ccagcagcttcccagccttccgattctgcctccaccacctcctcctcctccagcactaca
gcccccactgtacccactgctgcctcgtcaggctcagagaacccaccagaggggtccaaa
ccagccgaggagaggccctgcaacacttcagccccagcatcaacccccaccagttcctct
ggtctattgacaaatgtgaacatgttcgaggaggcaacttctgctctggtgacaggccaa
tcatatgagaacatggtgacagagatgatgctgatgggctatgagagggagcaggtagtg
gcagcgctcagagccagcttcaacaacccagacagagctgtggagtacctgcttacaggg
atcccagctggggaggagggagatgcgggtgctgactcagtggtgccccctgtgggtgga
ggaactccagctctcaacacaggcagtatgaccacccccgccagcgttgcaacaggagcc
aaccctctggggttcctggttaaccagcctcagttcctccagatgagacggatcatccag
cagaacccctctctgctccctgccttgctacagcagatagggagggagaacccccagctt
ctgcaacaaatcagcagccatcaagagcagttcatccagatgctgaatgagccagcccag
gaggggggaggaggtggaggaggtggtggtggtggtggaggaggaggaggagtggcggtc
ggtggggaggctggaagtggcatgaactacatccaggtcacaccccaggagaaggaggct
attgagaggctaaaagccctaggattccctgaaggacttgttatacaggcctactttgcc
tgtgagaagaatgagaacttggctgctaacttccttttacaacagaactttgatgacgac
taa
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