Coregonus clupeaformis (lake whitefish): 121573490
Help
Entry
121573490 CDS
T08357
Symbol
dhx29
Name
(RefSeq) ATP-dependent RNA helicase DHX29
KO
K18995
ATP-dependent RNA helicase DHX29 [EC:
5.6.2.6
]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03012 Translation factors [BR:
cclu03012
]
121573490 (dhx29)
Enzymes [BR:
cclu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
121573490 (dhx29)
Translation factors [BR:
cclu03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
121573490 (dhx29)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UBA_DHX29
DEAD
Helicase_C
OB_NTP_bind
HA2_C
DSRM_DHX29
AAA_22
HA2_N
AAA_19
nSTAND3
ATPase
nSTAND1
NPHP3_N
AAA_16
Motif
Other DBs
NCBI-GeneID:
121573490
NCBI-ProteinID:
XP_041741462
LinkDB
All DBs
Position
9:complement(22906611..22930637)
Genome browser
AA seq
1382 aa
AA seq
DB search
MGGKKKKSATVPTVPPAAAGGNVPAAGNGVADPATNGKKQKPTPAKAAVKENKPKGPKTY
SLTNTAQVDTGGVADKSILKVVIQADLEKKIIKLINDFRQENGDKGPISGRLTNKKLLDL
YLALQKFKFKTEHIEEAMKISVLYGGDLHSALDWLCLNLKDEELPAGFSQRMQEENHETK
PKFQPAPQAPQPESPKETKKEPAKVPVKDEGASMKEWILRYAEQSSEESSEEEEEQSGKK
TRNPELDEKFDPNDRYLVLTAQLYDAKEMAATAKAKKDKGGQRTAQDRIRVIQQEMKPLE
SHPMFNTVIKVVDTPKVEEKKPPAPNEGKEELSFGLFEQAEKEKTPPTEKTVKKNEPKDI
RNFDYTARSWTGKSPKQFLIDWVRKNLPKSPAPSFQKVAAGRYWKCRVRVQRLDDVLEVC
PNILTEDGMQAQHLGATLAIYNLCKGQSVHMLIPPTYREVWLEWRDSEQAEEEELRTAIN
KPRDQFIARLLTRLKQQQPQKKCPSPQPGLQGAGDEPEDDWESLANLEEEEDPGKTITPK
ERCGGAAEAAARALLLKLRGSALSRRLQTEREQLPVFQHRVRVMEALCRNRVVVVAGETG
SGKSTQIPQFILEELLTGEAEAQPCNIVVTQPRRISAMSLASRVSQELGCDDGPGAKSSL
CGYQIRMENKSSDSTRLLYCTTGVLLRKLQQDHMLSSLTHIIVDEVHERSVQSDFLLTIL
KDVVQKRSDLHLVMMSATVDCDKFAAYFNRCPIVNIPGRTFPVEVFHLEDIVEETGYVLE
KDSEYSQKILEEEEEVNINFTQKGGKNMQHQEFIVKDSGSGWDLGPDLDHFSSRTRHALQ
YMNPNKINMELVLDLLDYLDKSPQFAVVDGAVLVFLPGLAHIQQLYDLLSTDKRFRGKDR
YKLVALHSTLSSKDQAAAFTVPPAGVRKIVLSTNIAETGVTIPDVVFVIDTGKTKENKYH
ESSQMSSLVETFVSKASALQRQGRAGRVRDGFCFRLYPKFRFQAFMDYAIPEILRVPLEE
LCLHIMKCEYGSPEEFLCRALDAPQPQSVSNAVCLLRRIGACIPEGHALTPLGHHLATLP
VNVKIGKMLIFGAILGCLDPIATIAAAISEKSPFATPMNQKDQANLAKATLAVANSDHLT
IYNAYLGWKNIRSEGYRAEMAYCRKHFLNRNALITIEDIKQELMRMMDQAGFSGSSRSGR
GPPSRDRSDPRGPQAPLTPLGKPQICVLNAVLTAGLYDSVGRILYTPSVDVLDRVACSVE
TAQGKAQVHPSSVNRCLQTRGWLLFQEKVKYSKIYLRDTTLISPFPMLLFGGDIDVQHRE
RLISLDGWIHFQAPVRIGVIFKHLRKLIDSLLEKKLENPRMNLEDEKTIQLIIELIKMEN
VF
NT seq
4149 nt
NT seq
+upstream
nt +downstream
nt
atgggtggaaagaagaagaaatcagccactgtcccaacagtcccaccggcagcagcagga
ggcaatgttcctgctgctggaaacggcgtggctgaccctgctactaatgggaaaaagcag
aagccaactcctgcaaaagctgctgtgaaagaaaacaaaccaaagggtccaaagacctac
agcctcacaaacacagcacaagtggacacaggaggagtcgctgacaagtctattctcaaa
gttgtcattcaagcagacttggagaagaagatcatcaaactgatcaatgatttcagacaa
gagaatggagacaaagggccgatatcaggaagactcaccaacaagaaattgctggatctc
tacttagctctgcagaagttcaagtttaagacggagcacattgaggaagccatgaaaatc
agtgtgttgtatggaggagacctgcactctgccctcgactggctttgcctgaacctgaaa
gatgaggagctgccagcaggtttcagtcagaggatgcaggaagagaaccatgagaccaag
cccaagttccagcctgcaccccaagcaccccaacctgagtctcccaaagagacgaagaaa
gagccggcaaaggtgcctgtgaaggatgagggggccagtatgaaggagtggatccttaga
tacgcagagcagtccagtgaggagagcagcgaagaagaggaggagcagagtgggaagaag
acacggaacccagaactggatgagaagtttgatccgaacgacaggtacctggtgctcact
gcacagctgtacgatgctaaggagatggctgctacagccaaggccaagaaggacaaagga
ggtcagaggactgcacaggacagaatcagggtcatacagcaagagatgaagccactagaa
tcccatcctatgttcaacacagtgataaaagttgtagacacgcccaaagtcgaggagaag
aaaccacctgctccaaatgaggggaaggaagaactatcattcggcctgtttgaacaagct
gaaaaggaaaagacccctcccacagagaaaacagtgaaaaagaatgagcctaaagacatc
cgtaactttgactacacggctcgcagctggaccggcaagtcccccaaacagttcctgatt
gactgggtcaggaagaacctccctaagagccctgctccttccttccagaaggttgctgct
gggagatactggaagtgcagggttcgtgttcagagactggatgatgttttggaggtttgt
cccaatatcctaactgaggatggcatgcaggctcagcacctgggtgctacactggccatc
tacaatctgtgtaaaggacagtcagtccatatgttgatccctcccacgtaccgtgaggtg
tggctggagtggcgggacagcgagcaggcagaggaggaggagctccgcacggccatcaac
aaaccccgagaccagttcatcgcccggctgctgacccggctgaagcagcagcagccccag
aagaagtgtccttctccccagccagggctgcagggggctggggacgagcccgaggatgac
tgggagagcctggccaacctggaggaagaggaggacccagggaaaaccattaccccgaag
gagagatgtggtggggctgcagaggcggcggctcgggcccttcttctgaagctccgtggt
tcggcactgtcccggcggttacagacggaaagagagcagctcccggtgttccagcaccgc
gtgcgggtcatggaggctctgtgtcgcaaccgtgtggtggtggtggcaggggagacgggc
agcgggaagagtacccagatcccccagtttatcctggaggagctgctgactggggaagct
gaggcccagccctgtaacatagtggtcacccagccacgcaggatctctgccatgagtctg
gccagcagggtgtctcaggagctgggctgtgacgacgggcctggagccaagtcgtcgctg
tgcgggtaccagatccggatggagaacaagtcttcggactcgacccgtctgctgtactgc
accaccggggttctcctcaggaagctgcagcaggaccacatgctcagctctctgacccac
atcatagtggacgaggtccatgaacgcagcgtccagtctgatttcctgctgaccatcctg
aaggacgtggtccagaaacggtccgacctgcacctggtcatgatgagcgccacggtcgac
tgtgataagtttgccgcctacttcaaccgctgccctatagtcaacatccctggcagaacc
ttccctgtcgaggtgttccacctggaagacatagtggaggagacgggctatgttctggag
aaggactctgaatacagccagaagatccttgaggaggaggaggaggtcaacatcaacttc
acgcagaaaggagggaagaacatgcagcaccaggagtttatagtgaaagactcaggctct
ggctgggacctgggtcctgacctggaccacttcagcagccggacccgccacgccctgcag
tacatgaaccccaacaagatcaacatggaactggtcctggacctgctcgactacctggat
aagtctcctcagtttgcagtggtggatggagctgttttggtgttcctcccaggtctggcc
cacatccaacagctttatgacctgctctccacagacaagaggttccgtggcaaagacagg
tacaaactggtagccctgcactcgacactgtcatctaaggaccaggctgctgcatttaca
gtgccccctgctggagttaggaagattgtgctgtccacaaacatagcggaaactggagtc
accatacctgatgttgtgttcgttattgataccggaaagaccaaagaaaacaagtaccat
gagagtagccaaatgagttccctggtggagacgtttgtcagcaaggccagtgccctccag
aggcaaggcagggcaggacgcgtgcgagacggcttctgcttccgcctgtaccccaaattc
aggtttcaggcattcatggattacgccataccagagatactgagggttcccctggaggag
ctgtgtcttcatattatgaaatgtgagtatggctctccagaggagttcctgtgtcgagcc
ctagacgcgccccagccccagtctgtgagtaacgctgtgtgcctgctccggaggatcggg
gcgtgtataccggagggccacgccctcaccccgctgggtcaccatctcgccactctgcct
gtcaacgtcaagatcggcaagatgctcatcttcggcgccatcttgggctgtctggaccca
atcgcgactatagcagcagcgatctcggagaagtctccctttgccacgcccatgaaccag
aaggatcaggctaacctggctaaagctaccctggctgtagccaactcagatcacctgact
atctacaatgcttacctggggtggaagaacatacgcagtgagggatatcgagccgaaatg
gcctactgcaggaaacatttcctgaaccgcaacgccctcatcaccatagaggacatcaaa
caggagctgatgcgtatgatggaccaggctggattctctggttcctccaggtccggtcga
ggaccaccttcccgggatcggtctgaccccaggggtccccaggctcccctcacccccctt
ggtaagcctcagatctgtgtcctgaacgcggtgctgacagcaggactgtatgacagtgtg
gggcggatcctctacactccctctgtggacgtcctggaccgggtggcgtgctctgtggag
acagcccaggggaaggcccaggtccacccctcctccgtcaaccgctgcctgcagacacgc
ggctggctgctcttccaggagaaggtaaaatactctaagatctacctgcgggacacgacc
ctgatctctccgttccccatgctgctgtttggaggggacatcgacgtacaacaccgggag
agactcatctctctggacggatggatacacttccaggccccagtgaggatcggagtgatc
tttaaacacctgaggaagctcatagactcactgctggagaagaagctggagaacccacgg
atgaatctagaagatgagaagaccatccagttgataatagaactgatcaagatggagaat
gtcttctga
DBGET
integrated database retrieval system
