Coregonus clupeaformis (lake whitefish): 121573527
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Entry
121573527 CDS
T08357
Name
(RefSeq) CCR4-NOT transcription complex subunit 8
KO
K12581
CCR4-NOT transcription complex subunit 7/8
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121573527
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cclu03019
]
121573527
Messenger RNA biogenesis [BR:
cclu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
121573527
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
121573527
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
EKR
Nore1-SARAH
Motif
Other DBs
NCBI-GeneID:
121573527
NCBI-ProteinID:
XP_041741523
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All DBs
Position
9:41290098..41293686
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AA seq
285 aa
AA seq
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MPAALADTSQIICEVWASNVEEEMRKIRQIIQSYNSIAMDTEFPGVVVRPIGEFRSTVDY
QYQLLRCNVDLLKIIQLGLSFMNEDGDYPPGTTTWQFNFKFNLTEDMYSQDSIDLLQNSG
LQFKKHEEEGIDTLYFAELLMTSGLVLCENVKWLSFHSGYDFGYLVKLLTDTRLPEEEHE
FFQILNLFFPAIYDVKYLMKSCKNLKGGLQEVADQLELKRIGRQHQAGSDSLLTGMAFFR
MKELFFEDNIDDAKYCGRLYGLGSGSTQNQNGISSSSQEETNNKH
NT seq
858 nt
NT seq
+upstream
nt +downstream
nt
atgccagccgcacttgcagataccagtcagattatctgtgaggtctgggcaagcaatgtg
gaggaggaaatgaggaaaatccgacagataattcaaagctacaactcgattgccatggac
acagaattccccggagtagtagttcgacccattggcgagtttcgtagcacagtagattac
cagtaccagctcttgaggtgcaacgtggaccttctgaaaatcatccaactgggactgtcg
tttatgaacgaggacggagactatccccctggaacgacaacatggcagttcaatttcaaa
tttaatttaacagaggatatgtactcccaggactcaatagacctactccagaactccggc
ctccaattcaaaaagcacgaggaagaggggatcgacactctgtactttgctgagctcctg
atgacatctggtttagtgctgtgtgaaaatgtaaagtggctctcctttcacagtgggtac
gattttggctacctggtgaagctcttaacagacactcgcctacctgaggaggaacatgag
ttcttccagatcctcaatctcttctttcctgcaatctatgatgtgaaatatctgatgaag
agctgcaagaacttaaagggaggactccaggaggtggctgaccagctggaattgaagagg
attgggagacagcaccaggccggctccgattcactgctcacaggaatggccttctttagg
atgaaagagcttttctttgaagacaacattgatgacgcaaagtattgtgggcgattgtat
ggattgggctctgggtccacacaaaatcagaacggcatctcaagttcttcccaagaggaa
actaacaacaagcactga
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