Coregonus clupeaformis (lake whitefish): 121573560
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Entry
121573560 CDS
T08357
Name
(RefSeq) clathrin heavy chain 1 isoform X1
KO
K04646
clathrin heavy chain
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04142
Lysosome
cclu04144
Endocytosis
cclu05100
Bacterial invasion of epithelial cells
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
121573560
04142 Lysosome
121573560
09160 Human Diseases
09171 Infectious disease: bacterial
05100 Bacterial invasion of epithelial cells
121573560
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cclu04131
]
121573560
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
cclu04147
]
121573560
Membrane trafficking [BR:
cclu04131
]
Endocytosis
Clathrin-mediated endocytosis
Clathrin
121573560
Exosome [BR:
cclu04147
]
Exosomal proteins
Proteins found in most exosomes
121573560
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Clathrin
Clathrin_propel
Clathrin_H_link
Clathrin-link
TPR_COPA_B
TPR_PEP5_VPS11
TPR_Vps41
TPR_ELP1
Motif
Other DBs
NCBI-GeneID:
121573560
NCBI-ProteinID:
XP_041741577
LinkDB
All DBs
Position
9:1746581..1822073
Genome browser
AA seq
1687 aa
AA seq
DB search
MAQILPIRFQEHLQLQNLGINPANIGFSTLTMESDKFICIREKVGEQAQVVIIDMADPNT
PIRRPISADSAIMNPASKVIALKDAAKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTV
ALVTDNAVYHWSMEGDSQPIKVFDRHSSLAGCQIINYRTDAKQKWLLLIGISAQQNRVVG
AMQLYSVDRKVSQPIEGHAAGFAQFKMEGNTEESTLFCFAVRGQAGGKLHIIEVGTPPTG
NQPFPKKAVDVFFPPEAQNDFPVAMQISSKQDVVFLITKYGYIHLYDLETGTCIYMNRIS
GETIFVTAQHEATAGIIGVNRKGQVLSVCVEEENIIPYITNVLQNPDLALRMAVRNNLAG
AEELFARKFNNLFAGGNYSEAAKVAANAPKGILRTPDTIRKFQSVPAQPGQTSPLLQYFG
ILLDQGQLNKFESLELCRPVLQQGRKQLLEKWLKEDKLECSEELGDLVKSVDPTLALSVY
LRANVPNKVIQCFAETGQFPKIVLYAKKVGYTPDWIFLLRNVMRISPEQGLQFSQMLVQD
EEPLADITQIVDVFMEYNLVQQCTSFLLDALKNNRPSEGPLQTRLLEMNLMHAPQVADAI
LGNQMFTNYDRAHIAQLCEKAGLLQRALEHYTDLYDIKRAVVHTHLLNPEWLVNFFGSLS
VEDSLECLRAMLSANIRQNLQICVQVASKYHEQLSTNSLTELFESFKSFEGLFYFLGSIV
NFSQDAEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCD
RFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRLPVVIGGLLDVDCSEDVIKSLILVVRGQ
FSTDELVAEVEKRNRLKLLLPWLEARIHEGCEEPATHNALAKIYIDSNNNPERFLRENPY
YDSRVVGKYCEKRDPHLACVAYERGQCDQELINVCNENSLFKSLSRYLVRRRDPDLWASV
LLETNPFRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFS
EHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNELFEEAFAIFKKFDVNT
SAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGLVKEAIDSYIKADDPSAYME
VVQAADQSGNWEDLVKFLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQ
QVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFA
CVDGEEFRLAQMCGLHIVVHADELEELINYYQDRAYFEELITMLEAALGLERAHMGMFTE
LAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEFDNAIITMM
NHPTDAWKEGQFKDIITKVANVELYYKATQFYLEFKPLLLNDLLIVLSPRLDHSRAVNFF
SKVKQLPLVKPYLRSVQNHNNKSINEALSNLFITEEDYQALRTSIDAYDNFDNISLAQRL
EKHELIEFRRIAAYLFKGNNRWKQSVELCKKDKLYKDAMQYASESKDTELAEELLGWFLM
EDKKECFAACLFTCYDLLRPDVVLETAWKHNIMDFSMPYFIQVMREYLSKVNAIKEKVDK
LETSESLRKEEEQATETQPIVYGTPQLMLTAGPSVPVPPQQAYAYGYQAPAGYPQAPQAQ
PGFGYSM
NT seq
5064 nt
NT seq
+upstream
nt +downstream
nt
atggctcagattctgcctatccgctttcaggagcacctgcagctccaaaacttagggatc
aacccggccaacatcgggttcagcactctgacgatggagtctgataagttcatctgtatc
cgagagaaggtgggcgagcaagcgcaggtggtgatcatcgacatggccgaccccaacacg
cccatccgcaggcctatctctgcagacagcgccatcatgaaccctgcttccaaagtcatc
gcacttaaagacgccgccaaaacccttcagatctttaacattgagatgaagagcaagatg
aaggctcacaccatgacggacgacgtcaccttctggaagtggatctccctcaacacagtg
gcacttgtgaccgacaatgccgtctaccattggagcatggagggggactcccagccaatc
aaagtctttgaccggcactccagcctggcgggctgtcaaatcatcaactaccgcactgac
gccaagcagaaatggctactgctcatcggcatctccgcacagcaaaaccgtgtggtgggc
gccatgcagttgtactctgtggacaggaaggtgtcacagcccatcgagggccacgccgcc
ggcttcgcccagttcaaaatggagggcaacacagaggagtccacactgttctgctttgct
gtgagaggacaggccggaggaaagttgcacatcattgaggtgggcaccccacccacaggg
aaccagccttttccaaagaaagcagtggacgtgttcttccctccagaggctcagaacgac
ttccctgtggccatgcagataagctccaagcaggatgtggtgttcctcatcaccaaatat
ggctacatccacctgtatgacctggagactggcacctgcatctacatgaacaggatcagc
ggggagaccatctttgtcacggcccaacacgaagccaccgctgggatcatcggggtcaac
aggaaaggacaggtcctgtcagtgtgtgtggaggaggagaacatcatcccctacatcacc
aatgtgctccagaacccagacctggccctgcgcatggccgtccgtaacaacctagctggg
gccgaggagctgttcgcacggaagttcaacaacctgtttgccgggggaaactattctgag
gctgccaaggtggctgccaatgcaccaaagggtatcctgcgtactccagacaccatccgt
aagttccagagtgtgccagcccagccaggccagacctctcccctgctgcagtactttggc
atcctgctggaccagggccagctcaacaagtttgagtctctggagctgtgcaggcccgtc
ctacagcagggacgcaagcagctgctggagaagtggctcaaagaggacaagctggagtgt
tctgaagagctgggggacctggtgaagtcagtggaccccaccctggctctctccgtctac
ctgagggccaacgtacccaacaaggtcatccagtgcttcgctgagaccggacagttcccc
aagatagtcctgtacgccaagaaggtgggctacactccagactggatcttcctgctgagg
aacgtgatgaggatcagtccagaacagggcctgcagttctcacagatgctggtccaggac
gaggagcctctggctgacatcacacagattgtggatgtgttcatggagtataacctggtc
cagcagtgtacctccttcctattggatgccctgaagaacaacaggccttctgaggggccg
ctacagacacgcctcctggagatgaacctcatgcacgccccacaggttgcggatgccatc
ctgggcaaccagatgttcaccaactacgaccgtgcccacatagcccagctgtgtgagaag
gctggcctgctgcagagggctctggagcactacaccgacctgtacgacatcaagcgggcc
gtggtgcacacacacctgctcaacccagagtggctggtgaatttctttggctccctctca
gtggaggactctctagagtgcctgagggccatgttgtctgccaacatccgtcagaacctg
cagatctgtgtccaggtggcctccaagtaccacgagcagctctccaccaactccctaacc
gagctctttgagtccttcaaaagctttgagggtctgttctacttcctgggttccatcgtt
aacttcagccaggacgcagaggtccacttcaagtacatacaggcagcctgcaagacggga
cagatcaaagaggtggagaggatctgcagagagagcaactgctacgacccagaacgagtc
aagaacttcctcaaggaggccaagctgaccgaccagcttccgctcatcatcgtgtgtgac
cgcttcgactttgtccacgacctggtcctctacctgtaccgcaacaacctgcagaaatac
attgagatctacgtgcagaaagtgaaccccagccgtctgccggtggtgataggagggctt
ctggacgtggactgttctgaggacgtcattaagagtctgatcctggtggtcagaggacag
ttctccactgacgaactggtggccgaggtggaaaagaggaacagactgaagcttctcctg
ccctggctggaggcccgtatccatgagggctgtgaggagcccgctacccacaatgccctg
gccaagatctacatcgacagtaacaacaaccctgagcgcttcctgcgtgagaacccctac
tacgacagccgtgtggtgggcaagtactgcgagaagagggacccccacctggcctgcgtg
gcctacgagagaggacagtgtgaccaggaactcatcaacgtgtgcaatgagaactccctg
ttcaagagtctgtctcgctacctggtacgtcgcagggacccggacctgtgggccagcgtg
ctgctggagaccaaccccttcagaagaccactcatcgaccaggtggtgcagaccgccctg
tctgagactcaggacccagaggaggtgtcagtcacagtcaaggccttcatgactgcagac
ctgcccaacgaactcattgagctgctggagaagatcgtactggataactccgtcttcagt
gaacacagaaacctgcagaacctgctgatcctgacagccatcaaggcggaccgtacccgt
gtgatggagtacatcaaccgcctggataattatgacgctccagacatcgccaacatcgcc
atcagcaacgagctcttcgaggaggcattcgctatcttcaagaagtttgacgtcaacact
tcggccgtgcaggttctgattgaacacattgggaacctggaccgggcctatgagtttgcc
gagcgttgcaacgagccggccgtgtggagccagctggccaaggctcagctgcagaagggc
ctggtcaaggaggccatcgactcctacatcaaggctgacgacccctctgcctacatggag
gtggtacaggccgcggaccagagtggtaactgggaggacctggtgaagttccttcagatg
gctcgtaaaaaggcccgtgagtcctatgtggagacagagctcatcttcgccctggccaag
accaaccgtctggctgagctggaggagttcatcaacggacccaacaacgcccacatccaa
caggtcggcgaccgctgttacgatgagaaaatgtacgatgcggccaagttactgtacaac
aacgtgtccaacttcggccgcctggcgtccaccctggttcatctcggggagtaccaggcg
gcggtagacggggcgcgcaaggccaacagcactaggacctggaaggaagtgtgcttcgcc
tgcgtggacggagaggagttccggctggcccagatgtgtggcctccacatcgtggtgcat
gctgacgaactggaggaactcatcaactactaccaggaccgtgcttactttgaggagctg
atcaccatgctggaggcagccctggggctggagcgggctcacatgggcatgttcaccgag
ctggccatcctctactccaaattcaaaccccagaagatgagggagcacctggagctcttc
tggtccagagtcaacattccaaaggttctgcgggcggcagagcaggcccacttgtgggcg
gagctggtgttcctgtacgataagtacgaggagtttgacaatgccataatcaccatgatg
aaccaccccacagacgcctggaaggagggccagttcaaagacattatcaccaaggtggcc
aacgtggagctgtattacaaagccactcagttctatttggagttcaagcctttgttactg
aatgacctgctcatagtgctgtcccccagactggaccactcccgtgccgtcaacttcttc
agcaaggtgaaacagctgcccctggtcaagccctacctgcgctcagtacagaaccacaac
aacaagtctatcaatgaagcacttagcaacctcttcatcacagaggaggactatcaggct
ctgaggacgtctatagatgcctatgacaactttgacaacatctcgctggcccagcgcttg
gagaaacatgagctgatcgagttcaggagaatcgctgcgtacctcttcaagggtaacaac
cgctggaaacagagtgtggagctctgcaagaaggacaaactctacaaggatgccatgcag
tacgcgtcagagtccaaggacacggagctggctgaggagctgctgggctggttcctgatg
gaggacaagaaggagtgctttgccgcctgccttttcacctgctacgacctgctgaggcca
gatgtggtgttagagacagcctggaagcacaacatcatggacttctccatgccctacttc
atccaggtcatgagagagtacctctccaaggttaatgcaattaaggaaaaggtggacaag
ctggagacctcagagtccctacggaaagaggaggagcaggcgacagagacacaacccatc
gtctatggcacaccccagctgatgctgactgctggccccagtgtgcccgtacccccgcag
caggcctacgcctacggttaccaggcccctgcaggctacccccaggcccctcaggcacag
ccaggctttggctacagcatgtaa
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integrated database retrieval system
