Coregonus clupeaformis (lake whitefish): 121573594
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Entry
121573594 CDS
T08357
Name
(RefSeq) tsukushi
KO
K08130
tsukushi
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
cclu00535
]
121573594
Proteoglycans [BR:
cclu00535
]
Extracellular matrix (ECM) proteoglycans
Small leucine-rich proteoglycan (SLRP) family
class IV
121573594
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GFIT
Motif
Pfam:
LRR_8
LRR_5
LRR_4
LRR_1
LRR_EndoS
LRR_14
LRR_NXF1-5
LRR_LRWD1
LRRNT
Motif
Other DBs
NCBI-GeneID:
121573594
NCBI-ProteinID:
XP_041741627
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All DBs
Position
9:4597464..4603693
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AA seq
353 aa
AA seq
DB search
MSSLLGVWFLLILHYVAAVMDCHPGCRCEVESFGLFDSFSLTRVDCSGVGRGRGLVVPIS
IPLDTSSLDLSSSAIHTIADSMLSGPGYTTLASLDLSNNLLSRLNSSIFSRLRYLETLDL
SHNALEELAPGCFSGLPLAEVDLSDNRLQELSLEVFSNKGHGAGPLNVDLSNNLLNTVTT
RDLQVLSPPNIQSLSLAGNRLRAVPKLQGLPLRSLSLDGNPILSIERHSFTGLRDLAYLS
LSGLSELTSIQLQSFSELSSLQVLDLSHNIRLRPLNPEVFSGLAALQELNLSNSGVVSLP
SNILHLLPSIKSIVLREKVNCWKTHRQGQFHRQIGGQSKRGEELTCDVIGIVL
NT seq
1062 nt
NT seq
+upstream
nt +downstream
nt
atgtccagtctcctgggtgtctggttcttactcatcctccactacgtggctgcagtgatg
gactgccacccgggttgtcgctgtgaagtcgagagcttcggcctgttcgacagcttcagc
ctgaccagggtcgactgtagtggggtgggccgtggtcgtggcctggtggtccccatctcc
atcccgctggacacctcctccctggacctgtcctccagcgccatccacaccatcgctgac
tccatgctctctgggccgggctacaccaccctggccagcctggatctcagcaacaacctc
ctctccaggctcaacagtagcatcttctccaggctgcgctacctggagaccttggacctg
agccacaacgccctggaggagctggcccccggctgcttctctggcctgcccctggccgag
gtggacctgagcgacaacaggctccaggagctcagcctggaggtcttttccaacaagggc
cacggtgcaggacctctcaacgtggacctgtctaataacctgctgaacacggtcacaact
agggatctacaggtgctaagccctcctaacattcagagcctcagtctggcagggaatcgt
ctgagggccgtgcccaagctgcagggcctccctctgaggtctctgagcctggacggcaac
cccatcctcagcatcgaaaggcacagcttcacagggctaagggatctggcttacctgtct
ctcagtgggctgtctgagctcacctccatccagctccaaagtttcagtgagctgagcagc
ctgcaggtcctggacctgtcccacaacatcaggctgagaccacttaaccctgaggtgttt
agcggactggctgccttacaggagctcaacctgtccaactcaggggtggtgtctctgcct
agcaacattctccacctcctgcccagcatcaaaagcatcgttctcagggagaaggtaaac
tgttggaagacccatagacaggggcagttccacagacagataggaggacagtcaaagagg
ggggaggaattgacctgtgatgtcataggaatcgttttatga
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