Coregonus clupeaformis (lake whitefish): 121573603
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Entry
121573603 CDS
T08357
Name
(RefSeq) nuclear pore complex protein Nup98-Nup96-like isoform X6
KO
K14297
nuclear pore complex protein Nup98-Nup96
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
121573603
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cclu03019
]
121573603
03036 Chromosome and associated proteins [BR:
cclu03036
]
121573603
Messenger RNA biogenesis [BR:
cclu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
121573603
Chromosome and associated proteins [BR:
cclu03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
121573603
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup96
Nucleoporin2
Nup98_GLEBS
Nucleoporin_FG
Motif
Other DBs
NCBI-GeneID:
121573603
NCBI-ProteinID:
XP_041741641
LinkDB
All DBs
Position
9:5346616..5369866
Genome browser
AA seq
1810 aa
AA seq
DB search
MFNKSFGAPFGGGTGGFGTSSTFGQQNTGFGAATGGFGASAFGVTNNTGGLFGATQNKPG
GLFGSSTFSQPVTSSTSSGFGFGAASGTPTSLFGSTNTGGGGGLFSQQSNAFGAAKPASF
GTFGTSTASSGGLFGATNSNPFGGASASLFGASGFTQQAAQPGTTVKFNPATGSDTMVKG
GVTTSINTKHQCITAMKEYENKSLEELRLEDYQAGRKGPTNPMAAPTGGLFGAAAAATPS
TGAAGLFGSSATNTGFSFGQAKTNFGTSTGGFGAATGSLFGQQQQPQQAQQAASLFKPFG
QATSTPNTGFSFGNTSTMGQPQQTSTMGGLFGSTAASQAGGLFGNTAQTTPATGFGTGTG
LFGQTNTAFGNVGTQSLFGNKTAGFGATTTSAPSFGTGTGLFGNKPALTLGTATNPSNFG
FGPTAAGGSLFGNKTAAGGLGTGLGAGFGAAVGTGQMSLFGNNKPLGSTLGTMGAFGPQG
FSTGTSTLGFGAQQQPVALTDPNAAAAQQAVLQQQINALAYSPFGDSPLFRNPLSDPKKK
EERLKPTNPAAQKALTTPTHYKLTPRPATRVRPKALTSSGSSKSQLFDGLDDDEPSLTNG
AFMPRKSIKKLVLKNLNGSSLYSSPINRDTDDLASPPEYPLNGLSASVDEDDYVREVVEG
GAEDDLEINKFYTNPITKPSLQDTISELNAHRVGARGRNGLEVSSEDISLGEDSIQEERE
EEVQEVPPHPAGIVLGRVGYYTIPAMDELAKMVDENGVCVVENFTVGRKGYGSVFFHGEV
NVTGLNLDEIVHFRRKEVIVYPDDKNKPAEGEGLNRRAEVTLDGVWPNDKTTCTQVKSPE
RLSEMNYEGRLENASRKQGARFLEYRPETGSWVFEVAHFSKYGLQDSDEDEEVPLKVDPK
KLKTATTLPPGLQQLPLTQQQAQSTAVLELLSRMSEVDSDMADITQDAPGESMLGEEEGE
SGMGEEKGSRLGTVTPTEHNPVSASSQIASSLGINPHTLQIMKASLFAEDDGDMFQEQGG
MNSSLDRASPRILLPGTQGRPSIGGLLQTRFSGAGLFPQLPDVPFGGGLSGRLSMSRASA
VVHEPSRLSPWPSLGPAFLLPAPAAEATVRTVGARRLGGPVAPENSVTLGKGRLLMDAAL
FTGRSFRVGWGPGWTLVHCGDRLSGAGDKEQDQGDTGAGGFGFLPKPAKSKQLSDSPFKV
VIEQVVGLEPRDSEESQAVYQRPLEISLKHSTISTEGACPFIQPQNGVAALHEYVEWITD
LNQEAGAGDAVLGHWALVWTLCEALWGRLGSTEPGSSGYLQQLERRRSFSAWLSHSATQT
IEQEVGLSQGGGHVEAIFSYLTGHRISDACRLAQKSGDHRLSLLLSQTVGSQYGRELLAL
QLGDWNRMQTDSFLQEERLRIFALLAGKPLWQSTDCVVNVCSELDWKRCLAVHLWYMLPP
TASIADALAKYEAAFQGSAEGQKYACAPLPPYLDQSDPLDMEEEEESKRPLYDICFHLLK
LYSDRRYSLQQLLDPLTVTWERLDYRLSWHLWSVLQALHYTHLSPARQGLIHTSYAAQLE
SAGLWDMAIYVLLHIPEDVLRERAVREMLQLHCPMLETEESAQKERFLTERLLIPEQWLH
LAKATRARRETDRHKEALHLYRAGHWNLCHRLVIQHLASDCIINDNHEYLLEFLDGLAIP
ERSAVIQDWDTAGGVYLDYIRVIQTLNAIQQMESAGYKLERLHTEVTSLCSRIELLPCST
AKDRLAQSEMAKRVANILRVVLSLQQGGEGGEIPLSQLAPHIGRLPMPEDYALEELRSLT
QSYLRQLIVS
NT seq
5433 nt
NT seq
+upstream
nt +downstream
nt
atgttcaacaagtcatttggtgctcctttcgggggagggaccggaggatttgggacttca
tccacgtttggacaacaaaacactggctttggggcggcgacaggtggcttcggggcctct
gcgtttggggtgaccaacaacactggaggactctttggggcgacgcagaataaaccaggt
ggcctgtttggttccagtacgttcagccagcccgtgacgtcgtccaccagtagcggcttt
gggtttggcgcggccagcggcacacccactagcctgttcggcagcaccaacacgggcggc
ggcggaggactcttctcccagcagagcaatgccttcggagctgccaaaccagcctccttc
ggcacgtttggcacgagcacggccagcagcggggggctgtttggggcgaccaactccaac
cccttcggaggggcgtctgcctccctgttcggagcttcagggttcacccagcaggccgcc
cagccaggcaccaccgtcaagttcaaccctgcaacaggaagtgacaccatggtgaaaggg
ggagtgaccacgagcattaacaccaagcaccagtgcatcacggccatgaaggagtatgag
aacaaatcactggaggagctgaggttggaggactaccaggcagggaggaaaggccccact
aaccccatggctgcaccaacagggggtctctttggggctgcggccgcagccacccccagt
acgggggctgcagggctgttcggctcctcagccaccaacacgggcttctccttcggccag
gccaaaaccaacttcggcaccagtacaggtgggtttggtgcagccacaggcagtctgttt
ggccagcagcagcagccccagcaggcccagcaggcagccagcctgttcaagcccttcggc
caggccacatccacacccaacacaggcttctccttcggcaacaccagcaccatgggccag
ccccaacaaaccagcaccatggggggtctgtttggcagcactgcagcgtcccaggcaggg
gggttgtttggaaacacagctcagaccacaccagccacaggctttgggacgggaaccggg
ctcttcggacaaaccaacaccgccttcggcaacgtcggcacacagagcttgtttggtaat
aagacagcagggtttggcgccaccaccactagcgccccgtcgtttggcacaggcaccggc
ctcttcggcaacaaacccgccctcacccttggaacagccaccaacccatctaacttcggt
tttggacccaccgctgctggcggaagcctctttgggaacaagacggcagcaggaggactg
gggaccggactgggagccggctttggagcagcagtgggcactgggcagatgtctctgttt
gggaataacaagccgctgggttccactctgggaacaatgggagcgttcggaccgcaggga
ttcagcacaggaaccagcactctgggcttcggagcgcaacaacagcccgtcgcgctgaca
gaccctaacgcggcggcggcccagcaggcagtgctgcagcagcagatcaatgctctggcc
tactcccccttcggtgactcacccctcttcagaaaccccctctctgaccccaagaagaag
gaggagcgtctaaaacccaccaatccggcggcccagaaggcgttgacaacgcccactcac
tacaagctgacgccgcggcctgcaacacgtgtgcggcccaaagctctaacatcatcgggc
tcctccaagtctcagctgtttgacgggctggatgacgatgagccttctctcaccaacgga
gccttcatgcccaggaagagcattaagaagctggtgctgaagaacctgaatggcagcagc
ctgtacagcagcccaatcaacagagacacagatgacctggcctctccaccggagtacccc
ctcaacggactcagtgccagtgtggacgaggatgattatgttagggaggtggtggaggga
ggggccgaggatgacctggagatcaacaagttctacaccaatcccataaccaagcccagc
ctgcaggacaccatctcagagctcaacgcccatagggtaggggccaggggcaggaatggc
ctggaggtgagcagcgaggacatatcactgggagaggactccatacaggaggagcgagag
gaggaggtgcaggaggtgcccccccaccctgcaggtatcgttctgggccgtgtgggctac
tataccatccccgccatggatgagctggccaagatggtggacgagaacggtgtgtgtgtg
gtggagaacttcaccgtgggcagaaaaggttacggctcagtgtttttccatggtgaggtg
aacgtgacagggctgaacctggatgagattgttcacttcagacgtaaagaggtcatcgtc
taccccgacgacaagaacaagcccgctgagggggaggggctcaacagacgagctgaggtg
actctggatggggtgtggcctaatgataagaccacctgtactcaggtaaagagccctgag
cgtctgtctgagatgaactacgagggccgcctggagaacgcttcacgcaaacagggcgcc
cgcttcctcgagtaccgccccgagactggctcctgggtgtttgaggtggcccacttctct
aaatacggcctgcaggactctgacgaggatgaggaagttcctcttaaagtggaccccaag
aagctgaagacggccacaacacttcccccagggctgcagcagcttcctctcacccagcag
caggctcagtccacggcggtgctggagctactgagtcgcatgtctgaggttgacagtgac
atggccgacattacccaggatgccccaggggagagcatgttgggggaggaggagggggag
agtggcatgggggaggagaagggcagtcggctggggactgtgacccccacagaacacaac
cctgtctccgcatccagtcagattgcctcttcgctgggtatcaaccctcacactctacag
atcatgaaggcatctctgtttgctgaggatgatggtgacatgttccaggagcagggaggg
atgaatagctctctagacagggcctcccctcgcatcctcctgcctggcacgcagggcagg
ccctccatcggtggtctcctgcagactcgtttcagcggtgcaggtctcttccctcagctc
cctgacgttccctttggagggggcctttctgggaggctgtccatgtctcgggcgtccgcg
gtggttcatgagccctcgcggctctccccctggccctcgctgggtccagccttcctgctg
cctgccccagcggcagaggccactgtacggacggtgggggctcgacgcctggggggccct
gtggccccagagaactcagtcacactggggaagggccgtctgctgatggatgcagctctg
ttcacgggccggtcgttccgggtggggtggggtccaggctggactctggtccactgtggg
gacaggctgagtggggctggggacaaggagcaggaccagggagacacaggagctggaggt
tttggattcctgcctaaacctgccaagagcaaacaactctcagacagtccgttcaaggtg
gtgatcgagcaggtggttggtctggagccgcgggacagtgaggagagccaggcggtgtac
cagcggcccctggagatcagcctgaagcacagcacaatcagtacagagggggcctgcccc
ttcatccagccccagaatggggtggccgccctgcacgagtacgtagagtggatcactgac
ctcaaccaggaggctggcgctggagacgcagtcctgggtcactgggctctggtgtggact
ctgtgtgaggccctgtggggtcggctgggttcgacagagcctggttccagcggctacctg
cagcagctggagaggaggaggagcttttcagcctggctgtcccacagcgccacccagacg
atcgagcaggaggtgggcctgagccaggggggaggacacgtagaggctatcttcagctac
ctcaccggacaccgcatcagtgacgcctgcaggctggctcagaagagtggggaccaccgt
ctctccctgctgctgtcccagacggtgggctctcagtatggccgggagctgctggcgctg
cagcttggagactggaacagaatgcagacagactccttcctgcaggaggagaggctacgc
atcttcgccctgctcgccgggaaacctttgtggcagtctacagactgtgtggtgaacgtg
tgttcagagctggactggaagcgttgtttggcggtccatctgtggtacatgctgcctccc
acagcctccatcgctgacgccctggctaagtacgaagccgccttccagggctctgcagag
ggtcagaagtacgcctgcgcccccctgcccccctacctcgaccaatcagacccgctggac
atggaggaggaagaagagtctaaacggccgctctacgacatctgcttccacctgctcaaa
ctctacagtgacaggcgttacagcctgcagcagttgttggaccccctgacggtgacgtgg
gagcgtctggactaccgtctgagctggcacctgtggtcggtcctgcaggcgctgcactac
acacacctcagccccgcccgacagggcctcatacacaccagctacgctgcccagctggag
agcgctggcctctgggacatggccatctacgtactgctgcacatacctgaggacgtgctc
cgtgagcgtgcagtgagggagatgctgcagctgcactgccccatgctggagacagaggag
tctgcccagaaagagcgcttcctcacagagagactactgatcccagaacagtggctccac
ctggccaaagctactagagccagaagagagacggacagacacaaagaggccctgcacctg
tacagagcaggccactggaacctctgccacaggctggtcatacagcacctggcctcagac
tgtatcattaatgataaccatgagtacctgttggagttcctggacgggctggctattcct
gagcgcagtgctgtgatccaggactgggacacggcaggcggagtctacctggactacatc
agagtcatacagaccttaaacgccatacaacagatggaaagtgctggttataagctggag
cgtctacacaccgaggtgacatcactctgcagcaggatagagctcctcccctgctccacc
gccaaggaccgccttgcccaatcagagatggccaagcgcgtggctaacatcctgcgtgtg
gtgttgagtctgcagcagggtggtgagggtggggagatccccttgtcccagctagcgccc
cacatcggccgtctgcccatgcctgaggactatgccctcgaggagctccgcagcctcacc
caatcatacctgagacagctcatcgtcagctaa
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