Coregonus clupeaformis (lake whitefish): 121573641
Help
Entry
121573641 CDS
T08357
Name
(RefSeq) short transient receptor potential channel 2
KO
K04965
transient receptor potential cation channel subfamily C member 2
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
cclu04040
]
121573641
Ion channels [BR:
cclu04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
121573641
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
TRP_2
PKD_channel
Ank_2
Motif
Other DBs
NCBI-GeneID:
121573641
NCBI-ProteinID:
XP_041741706
LinkDB
All DBs
Position
9:7089614..7139291
Genome browser
AA seq
1147 aa
AA seq
DB search
MENLTPEQWREIVNKKMRFPPELISAIQEGNIVMVCGLLNTGDGIIRQLDDSEDRLWRES
LNLSIRLGNEDTMDALLQGIKFDFRQIHEALLVAVDTNQPRVVKRLLDRLDQEKGNKMDV
RSFSLAIFDHSIDDSQFAPGVTPLTLACQKDLYEIVTMLTQKGHVIPRPHKISCACLECR
NGRQYDLLKFSLSRINTYRGIASRAYLSITSEDAMLSAFGLSKELRKLSKKEPEFKPQYL
GLEELCQEFAVELLGMCRNQSEVTTILNSCGDESQDALDQQAFEEGIPNLTRLRLAVNYN
QKQFVAHPICQQVLSSIWCGNLSGWRGSRTAWKLLVSVGIFFTMPLLCLVYWIAPKSKVG
KILRIPVIKFLLHSASYMWFLITLLGESITMELYRDEFASRQQNILHSSFHMVWVVGFFW
YECKEVWIEGLRSYFLDWWNCMDMMVLSMYLASFTLRVLIMLKGHFLCQAPDGTEECAYF
TQTVRQDWHQEDPQLIAEVLFAVTSMLSFTRLAYILPAQESLGTLQISIGKMIDDMMRFM
FILMIIGTAFLCGINNIYVPYVTQPYLGRFNETFRFLFWTMFGVANQDYVDMPKFVVAEF
VGRVLYGIFTLVIVIVLLNMLIAMITNSFQKIEDDADVEWKFARSKLYLSYFREGLTMPV
PFNIIPSPKAFFYLIRGIFRQICCCCTLNSTPDYPPITSMSNEKEMDGGGSGENQIPYRQ
QVIRALVQRYIESERRKFEETKRKDVGNRITELNKVVGRLHAEMKAIMQVLVDSGQAAGD
IPNTDGSSILGKYIMGAKNNFRGFDNRLDNKHTPLQVIVEMGGEEGKVAEEKAGAVVIPD
DEGMEMEHDRKVEIGKDGAVLIAEEGGMAMEQEVKDGGVVVKQEVKVGLDGAEGTKQVGD
MDVVKMEEGRIDGNKGERRVEEVVKQSEQNMENGVKGEVRVEKIVKESEHKMERRGDGDR
KGDKGIKKAHTNEMVEKRVEGEASLGKAEVRMKVKDKGEKVDSSVDNTIGDQGVVGGDKK
VNEMGGCGNEGKVDMGLGDVKEVERKVKAMALKEKRVVGKINVAERWTKGQGRAVEENVT
EKKAAKAGMVVVENTARAEVKTQGEKVVPSPTSSSSSQDTGFGSQEGEGSIDGGPMRPAH
LSASSPD
NT seq
3444 nt
NT seq
+upstream
nt +downstream
nt
atggaaaacctcacaccagagcaatggcgggagatagtgaacaagaagatgcgcttccct
ccggagctgatcagtgccatccaggaggggaacatagtgatggtgtgtggcctgctgaat
actggtgatggtatcatccgccagctggatgactccgaggaccggctgtggagagagtcc
ctcaacctgtccatccgcctgggcaacgaggacaccatggacgccctcctccagggcatc
aagtttgactttcgccagatccatgaggctctgctggtcgccgtggacaccaaccagccc
cgcgtggtgaagaggctcctcgaccgcctggaccaggagaagggcaacaagatggacgtg
cgatccttctccctggccatcttcgaccactctatcgacgactcacagttcgcccctggc
gtgaccccgctgaccctggcctgtcagaaggacctgtatgagattgtcaccatgctgacc
cagaagggccacgtcatcccacggccacacaagatctcctgtgcctgtctagagtgcagg
aacgggcggcagtatgacctgctgaagttctccctgtctcgcatcaacacctaccgtggc
attgccagtcgggcctacctgtccatcacctcagaggacgccatgctcagtgccttcggc
ctcagcaaggagctccgcaaactctccaagaaggaacccgagttcaagcctcagtacttg
ggtctggaggagctgtgccaggagtttgcagtggagctgctgggaatgtgccgtaaccag
agtgaggtcaccaccatcctgaacagctgtggagatgaaagccaggacgcccttgaccag
caggcctttgaggagggcatccccaacctgacccgccttaggctcgccgtcaactacaac
cagaaacagtttgtagcccaccctatctgccagcaggtgctgtcctctatttggtgtgga
aacttgtctggctggaggggcagcaggacggcctggaagctgctggtgtctgtggggatc
ttcttcaccatgccgctcctctgcctcgtctactggatcgcacccaagtccaaggtggga
aagatactgaggattccggtgattaagttccttcttcactctgcctcctacatgtggttc
ctcatcacgttgttgggagagtccatcaccatggagttgtacagagacgagtttgcttct
cgtcagcagaatattctgcacagctcattccacatggtgtgggtggtcgggttcttctgg
tatgaatgtaaggaggtgtggattgaaggtctgcgtagctacttcctggactggtggaac
tgcatggacatgatggtgcttagcatgtacctggcctccttcactctgcgcgtcctcatc
atgctcaaaggtcacttcctgtgccaggcccctgacgggactgaggagtgtgcctacttc
acccagactgtgcgccaggactggcatcaggaggacccccagctcatagctgaggtgctg
tttgcagtgaccagtatgctgagcttcacccgcttggcctacatccttcctgcacaggag
tccctgggcacactccagatctccatagggaagatgatcgatgacatgatgaggttcatg
ttcatattgatgattattggaacagctttcctctgtggtatcaataacatctatgttcct
tatgtcacccaaccatatcttggaaggtttaatgagacctttcgtttcctgttctggacc
atgtttggggtggccaaccaggactatgtggacatgcccaagtttgtggtggcagagttt
gtgggcagagtcctttacggcatcttcaccctggtgattgtgatcgtgctgctcaacatg
ctcattgccatgatcaccaactccttccagaagattgaggatgacgctgacgttgagtgg
aaatttgcccgatccaagctctatctgagttacttccgagaaggtctcactatgcctgtc
cccttcaacattatcccctctcctaaggccttcttctatctcatacggggtatttttcgt
cagatctgctgctgttgtactttgaactcgacaccagactatccccccataacctccatg
tccaacgagaaggagatggacggtggaggatcaggggagaaccagataccttaccgccag
caggtgatacgggctctggtgcagcgctacattgagtctgaacgccggaagtttgaggag
accaagagaaaagacgtgggtaatcggatcacagagctaaacaaggtggtgggcaggctg
catgctgagatgaaggccatcatgcaggttctggtggactctggccaggctgcaggagac
atccccaacactgatggctcctccatcctggggaaatacataatgggagccaagaacaac
ttcagggggttcgacaacaggctggacaacaaacacacacctctgcaggtgattgtggag
atggggggagaagaaggaaaagtggcggaagagaaggctggagcagtggtgataccagat
gacgaagggatggagatggaacatgacagaaaggtggagataggaaaggatggagcagtg
ctgatagcagaggagggagggatggcaatggaacaggaggtaaaggatggaggggtggtg
gtcaaacaggaggtaaaggtggggctagatggagcagaggggacaaagcaggtaggagac
atggatgttgtgaagatggaggaggggagaattgatggaaataagggagagagaagggtg
gaggaggtagtgaagcagtccgagcagaacatggaaaatggagtgaagggagaggtaaga
gtggaaaagattgtaaaggagtcagagcacaagatggaaaggagaggagacggtgacagg
aagggggacaaggggataaaaaaggcacacaccaatgagatggtggagaaaagggtggag
ggagaggccagtctgggtaaggcagaagtaaggatgaaagtgaaagacaaaggggaaaag
gtagatagcagtgtggataatacaatcggggaccaaggagttgtaggaggtgacaaaaag
gttaatgaaatgggaggatgtgggaatgaagggaaagtagacatgggactgggagatgtg
aaagaggtagagaggaaggtcaaagcaatggcactaaaggagaaaagagtggtggggaag
atcaatgtggcagagaggtggactaagggccaggggagggcagtggaggagaatgtgact
gagaagaaggctgccaaggctggcatggtggtggtggagaatactgccagggctgaggtg
aagacccagggggagaaggtggttccttccccgaccagcagcagcagctcacaggacact
ggcttcggctcacaggaaggggaggggtccatcgatggaggaccaatgagacccgcacat
ctgagtgcatcatctccagattag
DBGET
integrated database retrieval system
