Coregonus clupeaformis (lake whitefish): 121573675
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Entry
121573675 CDS
T08357
Name
(RefSeq) Down syndrome cell adhesion molecule-like protein 1 homolog isoform X1
KO
K06768
Down syndrome cell adhesion molecule-like protein 1
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
cclu04515
]
121573675
Cell adhesion molecules [BR:
cclu04515
]
Immunoglobulin superfamily
DSCAM family
121573675
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
I-set
Ig_3
fn3
Ig_2
ig
Ig_DSCAM-DSCAML_C
V-set
C2-set_2
Pur_ac_phosph_N
Ig_5
Ig_6
Sp38
DUF6034
ChitinaseA_N
DUF1461
Motif
Other DBs
NCBI-GeneID:
121573675
NCBI-ProteinID:
XP_041741763
LinkDB
All DBs
Position
9:complement(8536386..8650604)
Genome browser
AA seq
2077 aa
AA seq
DB search
MWLVTLLLLYSLQEVHSEDVGSTRLYFVNASLQRLTYSSSVGVSLPCPAGGTPTAILRWY
LATGDDIYDVPHIRHVHANGTLQLYPFSPSAFNSYIHDNDYFCTAENQAGKIRSPNIRVK
AVFREPYTVRVADQRSMRGNVAVFKCLIPTAVQEYVSVVSWERDTVSIIPGNRFFLTSFG
ALYISDVQKEDALSTYRCITKHKYSGETRQSNGARLSVMDPTESSPSILDSFQAGEVRAG
QSVELPCMAAGYPSPTVRWLKDGRPLPSDARWTRRLTGLTISDLRQEDSGSYACEVTNSF
GSKEVSGALYVVDPLRVTLSPKSLKTGISSTLFFTCAVEGSPEYTVAWYRNTELIVPDQH
ISIQGSHNDTLQITAAQKSHSGAYQCFASRKGHTAQDFSIILLEDGTPRIVSSFSERVVA
PGEPFSLMCASKGAPPPSITWTLDDEPVVRDSAYKTSQYTLSDGLTVSHVNVSSPAIRDG
GVYRCAARNSAGSAEYQARINVRGSPRIREMRDITAVAGRNTFITCRVIGYPYYSIKWFK
DGMLLPDNHRQVVYENGTLRLSDVQKGMDEGTYLCSVLIQPQTSIDQTVHVTVKVPPLIQ
PFDIPSTSVGKLMYIACVVSSGDMPIRITWHKDGQLIVPGSASGVGIETKEFMSSLQISK
VTLKHNGNYTCIASNAAATVSWERQLIVTVPPRFVVQPNNQDGIYGKAGVLNCSVEGYPP
PKVMWKHAKGIGNPQQYHPVPLTGRIQIMSNGSLLIRHVLEDDRGYYLCQASNGVGSDIS
KSMVLTVKIPAMITSHPNTTMAIKGQMKELNCTARGEQPIIIRWERGDTVIDAERNPRYS
ITINKKGDEVISTLKLKPAERGDSVFFSCHAINSYGEGRGLIQLTVQEPPDPPELEVREV
KDRSMNLRWIQRFDGNSIITSYDIEYKNKSDTWDHKYTTRNISPTNNQANIVELHPACVY
SIRMYSFNKIGRSQPSKELTISTEEAQPDGPPMEVILQSMTSQSIRVTWRAPRKELQNGV
IRGYQIGYRENGPGSNGQYSIVEMKATGDSEVYTLDNLKKFAQYGVVVQAFNRAGTGPSS
TEINATTLEDVPSQPPQNVRAISVTSDEAVITWVEPPRLTLHGVLKGYRVVFWSLFPDGG
GCCGGQAQGQMQKWGEMQNITTTREQVELRGMEKFTNYSVQVLAYTQAGDGVRSNVLYIQ
TREDLPGPPAGIKAVPSSPNSVVVSWLPPHKPNGVIRKYTIYCSSPGSGQPQAWVEAEIG
REREREKKAPSEYEANPEMLFYRITHLTRGKQYLIWAAAVTTAGRGNISEKVTVEPAGKA
PAKILSFGGTVTTPWVKEVRLPCSSVGEPTPTIKWTKDSEDSTIPVTVDGQRQILSNGTL
VLRSVKAEDSGYYTCTATNTLGFDTIIVNLLVQVPPDQPRLTVSTTSTSSITLAWIPGDN
GGSSIRGFVLQYSVDNTEEWRDVFISSSERSFRLDNLRCGTWYKVKLAAKNSVGSGRISE
IIEAKTHGREPVFNKEQPLLTHINSTYAGLNLQGWTSGGCPITTLLLDFRPKGTWAWQSL
KANATAQFFLSELREATWYELKMKACNSAGCGNQSSQFATTDYDGSTIPPINSAQEDRDD
VKKLFSIGSPVILVTLGVALLFIIRKKRKEKRLKRLRDAKSLAEMLISSKNNRSMDTPVK
GPPQGPRLHIDIPRVQLLIEDKEGIKQIGEDKAVAPVTDTEFSQSVNPQSFCTGVSLHHP
ALIQNTGPLIDMSDIRPGTNPVSRKCVKSAHSSRNRYSSQWTLSRPGQSQSTASARTLTS
DWRTMGSHGITATESDSYSASLSQDTDKGRNSMVSTESASSTYEELARAYEHAKLEEHLQ
HAKFTITECFISDSSSDQMTTGTNDPADSMTSLSTPSETGLCRFTASPPKPQDYDRGRPT
NVAVPIPHRANKSEFCNLPLYMKTDPFFRKQAELHDPCPAVPPREASIRSLAQRAYHTQG
RHMTLDPSKQQALTLGHSGLGSLGVSSGTATLPQRTLTMPGSNPAATASTSSTSSNPTGS
STKMGGSRDSLLENSSSALGRLQKQGVGAYSKSYTLV
NT seq
6234 nt
NT seq
+upstream
nt +downstream
nt
atgtggcttgtaactttactcctgctgtactctctccaggaagtacacagtgaggatgtg
ggctctaccaggctgtactttgtgaacgcatccctgcagaggctgacctactccagctcg
gtgggggtgtctctgccctgcccggcgggcggcacccccaccgccatcctgcgctggtac
ctggccaccggcgatgacatctacgacgtgccccacatccgccacgtccatgccaacggc
accctccagctctaccccttctcgccctccgccttcaactcctacatccacgacaacgac
tacttctgcaccgcagagaaccaggctggcaagatccgaagccccaacatcagagtcaaa
gctgtattcagggagccctacacagtacgtgttgcagaccagcgctccatgcgtggcaac
gtggccgtgttcaagtgcctcattcctaccgccgtgcaggagtacgtcagcgtggtgtcc
tgggagagagacaccgtctccatcatcccaggtaacaggttcttcctgacgtcctttggt
gctctgtacatctcagatgtccagaaggaggatgccctctctacctaccgctgcattacc
aagcacaaatacagcggagagacgcgccagagcaatggagccaggctgtctgtcatggac
cccaccgagtcgtctccctctatcctggacagtttccaggcgggggaggtgcgggctggt
cagagtgtggagctcccctgcatggcagcggggtaccccagccccacggtgcgctggcta
aaggacgggcgcccgctgccctctgatgcacgctggactcggcgcctcacgggtctgacc
atcagtgacctcaggcaggaggacagcggtagctatgcctgtgaggtcaccaacagcttc
ggctccaaggaagtgtctggagcactctatgtcgtagaccccctgcgagtgaccctctcc
cctaagagtctgaagacgggtatcagcagtaccctgttctttacctgtgctgtggagggt
tctccagagtacacagtggcctggtacaggaacacagaacttatagtcccagaccagcac
atctccatacagggctcccacaacgacaccctgcagatcactgccgctcagaagagccac
tctggggcctaccagtgctttgcctcccgcaagggccacactgcccaggacttctctatc
atactgctggaggacggcactcctcgtattgtgtcctccttcagtgagcgtgtggtcgcc
cccggtgagcccttctccctgatgtgtgcctccaagggagccccacccccctccatcacc
tggacgctggacgacgaacctgtagtgcgagactccgcctacaagaccagccagtacacc
ctatcagacggcctgaccgtgtcacatgtcaacgtcagcagcccggccatccgcgacggg
ggagtgtatcgctgcgccgcacgcaactcggccggtagcgccgagtaccaagcgcgcata
aacgtaagaggttcacctaggatcagggagatgcgtgacatcacggctgtggcaggaagg
aacacctttataacctgtcgtgtgattggttacccctactactctatcaagtggtttaag
gatggcatgctgctgcctgacaaccatcgccaggtggtgtatgagaatggaacgctgagg
ctgagtgatgtgcagaagggcatggatgagggtacctacctgtgtagtgtactcatccag
ccacagacctctatcgaccagactgtccacgtcaccgtcaaagtgcctcccctgatccag
ccctttgatatcccctccacgtcggtgggaaagctcatgtacatcgcctgcgtggtgtcg
tcaggtgatatgcccatccgcataacctggcacaaagacgggcaactcatcgtgcctggt
tctgcctctggtgttggcatagagaccaaggaattcatgagctccttgcagatctccaag
gtgacgctgaagcacaacggcaactacacctgcatcgctagcaacgccgcggcaaccgtc
agctgggagagacagctgatcgtcaccgttccccctcgcttcgtggtccagcccaacaac
caggatgggatctatgggaaggcaggagtactaaactgttctgtagagggatacccccct
cccaaagtcatgtggaaacacgccaaaggtatagggaacccccagcagtaccaccctgtg
cctctgactggtcggatccagatcatgtccaacggctccctgctgattcggcatgtccta
gaggacgaccggggatactacctctgtcaggcctccaacggagtgggctctgacatcagc
aagagcatggtcctcactgtcaagattccagccatgatcacgtcgcaccctaacaccacc
atggccatcaagggccagatgaaggagctgaactgcacagcgcggggggagcagcccatc
atcatccgatgggagaggggtgacactgtcatcgatgccgagaggaacccccgctactcc
atcaccatcaacaagaagggggacgaggttatctccacactcaagctgaagccagcggag
cgtggggactcagtcttcttctcctgccacgccatcaactcatacggagaggggcgagga
ctcatccagcttaccgtgcaagagcctcctgaccctcctgagttggaggtgagagaggtg
aaggaccgcagtatgaacctgcgctggatccagaggtttgatggcaacagcatcatcacc
agctacgacattgagtataagaacaagtctgacacttgggatcacaagtacacaaccagg
aacatctcccccactaacaaccaggctaacatcgtggagctgcaccctgcctgtgtctac
agcatccgcatgtactccttcaacaagatcggacgcagccagcctagcaaggagctcacc
atcagcactgaggaagcacaacctgatgggccccctatggaagtgatcctccaatcaatg
acgtctcagagcatacgggtcacatggagggcccccagaaaggagcttcagaacggggtg
atccgggggtaccagatcggttaccgtgagaacgggccgggcagtaacggccaatacagc
attgtggagatgaaggccacgggggacagtgaggtgtacaccctggacaacctgaagaag
ttcgcccagtatggagtggtggtccaggccttcaacagggctggcactggcccctctagc
actgagatcaatgctaccacactagaggatgtgcccagccagccgccccagaacgtgcgg
gctatctcggtgacgtcagacgaggcggtgatcacgtgggtggagcccccgcgtctgaca
ctgcatggcgtgctgaagggctaccgcgtggtattctggtccctcttccccgacggaggt
gggtgctgtgggggccaggcccaggggcagatgcagaaatggggagagatgcaaaacatc
actacaactcgtgagcaggtggagctgagagggatggagaagtttactaactacagtgtc
caggtgctggcctacacacaggctggggatggggtcaggagcaatgtcctgtacatccaa
acccgcgaggacctcccaggtcctccagctggtatcaaagcagtgccctcatctcccaac
agtgtggtcgtatcctggctacccccccataaacccaatggtgtcatccgcaagtacacc
atctactgctccagcccaggctccggacagccgcaagcctgggtagaggctgagataggg
agggagagagaaagagagaaaaaggctcccagtgagtatgaggccaacccagagatgttg
ttctacaggatcacccatctgacccgcggtaaacagtatctcatctgggccgccgccgtg
acaactgctggccgtggcaacatcagcgaaaaggtcaccgtggagcctgctgggaaagcc
ccagctaagatcttgtcattcgggggcacagtgaccactccctgggtgaaggaggtccgt
ctgccctgcagctcagtgggagaacccacccccaccatcaaatggaccaaagacagtgag
gactcgactatccctgtgactgtggacggacagcgtcagatcctgtccaacggtacactg
gtgctgcgttccgtcaaagctgaggattctgggtactacacgtgcacggccaccaacacg
ctgggctttgacaccatcatagtcaacctgctggtgcaagttcctccagaccagccccgt
ctaaccgtctccaccacctccacctcttccatcaccctggcctggatccctggggacaac
ggaggcagctccatcagaggtttcgtcctgcagtattcggtggacaacacagaggagtgg
agggatgtgttcattagttccagtgagcgttccttcaggctggacaacctgcgctgtggc
acctggtacaaggtcaaactggcagccaagaacagtgtgggctcaggacgcatctctgag
atcatcgaggctaagacccacggacgagagcccgtgttcaacaaggagcagcccctactc
acccacatcaactccacctacgcagggctcaacctgcagggctggaccagcggaggctgc
cccatcaccactctgctgctggacttccgccccaagggcacgtgggcctggcagagcctg
aaggccaacgccacggcccagttcttcctcagcgagctgcgcgaggccacctggtacgag
ctgaagatgaaggcttgtaatagtgccggctgtgggaaccagagctcccagttcgccacc
acagactatgacggcagtaccatccctcctataaactcggcccaggaggacagggatgat
gtgaagaagctgttctccatcggctctcctgtcatcctggtcaccctgggcgtcgccctg
ctcttcatcatccgcaagaaacgcaaggagaagagactcaaacgactcagagatgctaag
agccttgcagagatgcttatcagcagtaagaacaaccgcagcatggacactccagtgaag
ggtcctccccagggccctcggctccacatcgacatcccccgtgtccagctgctcatcgag
gacaaggaaggcatcaagcagataggtgaggacaaggcagtggccccagtgacggacaca
gagttcagccaatcagtgaatccacagagcttctgtacgggcgtatctctgcaccatccc
gccctcatccagaacacagggcccttgattgacatgtcagacatccgccctggaaccaac
ccagtgtcgaggaagtgtgtgaagtcagcccacagctccagaaaccgctactccagccag
tggaccctgagcaggccgggccagagccaatcaacagcctccgcaaggactctgacctct
gactggcgcaccatgggctcccacggcatcaccgccaccgagagtgacagctacagcgcc
agcctgtcccaggatactgataagggtcgtaacagcatggtgtccacagagagtgcgtcg
tctacgtatgaggagctggcgcgggcctacgaacacgccaaactggaggagcacctgcag
catgccaagttcaccatcacagaatgcttcatctccgacagctcctctgaccagatgacc
acaggcaccaatgatccggccgacagcatgacatcactcagcacgccgtccgagacaggc
ctgtgtcgctttaccgcctcgccacccaaaccccaggactatgaccgtggcagacctacc
aacgtggccgtgcctatcccccaccgcgccaacaagagtgaattctgcaacctcccgctc
tacatgaagacggaccctttcttccggaagcaggcggaactgcatgacccatgccctgcg
gtcccgcccagggaggcctccatccgcagcctggcacagcgggcgtaccacacccaggga
cgtcacatgactctggacccgtccaagcaacaggccctgacgctgggccactctggactg
ggcagtctgggcgtgagctcaggcactgccaccctgccccagaggactctcaccatgccc
ggctccaaccctgcagccacagcctccacctccagcaccagcagcaaccccactggctcc
agcaccaagatggggggctccagagactcactgctagagaacagctcctcagcgctgggc
agactgcagaagcaaggggtcggggcctactccaagtcttacacactggtgtag
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